BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29410.1
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491817 jgi|Araly1|491817|fgenesh2_kg.7__1250__AT4G29410.1 754 0.0
> Ahg491817 jgi|Araly1|491817|fgenesh2_kg.7__1250__AT4G29410.1
Length=541
Score = 754 bits (408), Expect = 0.0
Identities = 483/519 (93%), Gaps = 6/519 (1%)
Strand=Plus/Plus
Query 9 TCCGGCACGAGTCTCGTTCTCTTCTCT-TTACCGCCGTCATCTAGGTCTGCTAATATCAA 67
||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1 TCCGGTACGAGTCTCGTTCTCTTCTCTATT-CCGCCGTCATCTAGGTCTGCGAATATCAA 59
Query 68 GTGAAGGAGCTCGAAATGGCCACAGTTCCAGGACAGTTGATCTGGGAGATCGTGAAGAGA 127
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 60 GTGAAGGAGCTTGAAATGGCAACAGTTCCAGGACAGCTGATCTGGGAGATCGTGAAGAGA 119
Query 128 AACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAATGCCAAGGTTCAGTTCAGCAAA 187
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 120 AACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAACGCTAAGGTTCAATTCAGCAAA 179
Query 188 GAGAGCAACAACCTCGTCAACATCAACTCGTACAAGCACTCTGGTTTGGCCAACAAAAAG 247
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 180 GAGACCAACAACCTCGTCAACATCAACTCTTACAAGCACTCTGGTTTGGCTAACAAAAAG 239
Query 248 ACAGTGACCATTCAGGCGGCTGGCAAGGACCAAGGTGTTGTACTCGGAACCACCAAGACT 307
|| ||||| |||||||| |||| |||||||||| |||| ||||||||||||||||||||
Sbjct 240 ACGGTGACTATTCAGGCTGCTGACAAGGACCAATGTGTGGTACTCGGAACCACCAAGACC 299
Query 308 AAGAGACAAAACAAGCCTAAGCTCTCTGTTAACAAGTCTATCCTCAAGAAGGAGTT-CTC 366
|||| |||||||||||||||||||||||||||||||||| | |||||||||||||| | |
Sbjct 300 AAGAAACAAAACAAGCCTAAGCTCTCTGTTAACAAGTCTGTTCTCAAGAAGGAGTTTCCC 359
Query 367 GAGGATGA-GTAAAGTTGTTGCCAATCAGGTAGTGGACAACTACTACAGGCCTGATTTGA 425
||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 -AGGATGACG-AAAGCTGTTGCCAATCAGGTGGTGGACAACTACTACAGGCCTGATTTGA 417
Query 426 AGAAAGCAGCACTTGCTAGGCTTAGCGCTATCAGCAAAGGTCTTAGAGTAGCCAAGTCGG 485
||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| |
Sbjct 418 AGAAAGCAGCACTTGCTAGACTCAGCGCTATCAGCAAAGGTCTTAGAGTCGCAAAGTCTG 477
Query 486 GTCCCAAGAGGAGAAACAGACAGGCTTGAAGAATCCACT 524
|||||||||||||||||||||| ||||||||||||||||
Sbjct 478 GTCCCAAGAGGAGAAACAGACAAGCTTGAAGAATCCACT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26076075228
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5