BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29420.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491816 jgi|Araly1|491816|fgenesh2_kg.7__1249__AT4G29420.1 2126 0.0
> Ahg491816 jgi|Araly1|491816|fgenesh2_kg.7__1249__AT4G29420.1
Length=1596
Score = 2126 bits (1151), Expect = 0.0
Identities = 1459/1605 (91%), Gaps = 32/1605 (2%)
Strand=Plus/Plus
Query 1 CCTTCAATTTCCCAAATCAAGAAACACCATGGACGAGTTACCACCAGAGCTC-TGGATCA 59
|||||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||| |||
Sbjct 1 CCTTCAATTTCCCAAATCAA-CAACGCCATGGAAGAGTTACCTCCAGAGCTCTTGG-TCA 58
Query 60 AAATTCTGAGTCGAATCAACGATTCCGAATCCCTAGCACGATGTAGAGTCGCTTCCAAGA 119
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 59 AAATTCTGAGTCGACTCAACGATTCCGAATCCCTAGCTCGATGTCGAGTCGCTTCCAAGA 118
Query 120 CATTGAACTCGCTTTCTCGAGAGGTTCGCGCCGTGAATCTCATCTGTACCTGGTCTCGGT 179
||||||||| |||| |||||||||||||||||||||||||| ||| |||| ||| ||||
Sbjct 119 CATTGAACTTACTTTTTCGAGAGGTTCGCGCCGTGAATCTCACCTGCACCTTGTCCCGGT 178
Query 180 ACTTAAAATCGCGGTCCATCGTCGTTGTCACACCGTTCAAGACGATCTTCAGAAGCCTAA 239
|||||||||||||||||||||||| |||||||||||||||||||| || || ||||| |
Sbjct 179 TCTTAAAATCGCGGTCCATCGTCGTCGTCACACCGTTCAAGACGATATTTAGGAGCCTCA 238
Query 240 TCGAGAACT-CTAGCAAAATTCGCTCAATCTCAGTCGGAGTCGATAAGGCGCTTAAGGGA 298
||||||| | || | || ||||||||||||||| |||||||||||||||| |||| |||
Sbjct 239 TCGAGAATTCCT-GTAACATTCGCTCAATCTCAATCGGAGTCGATAAGGCACTTATCGGA 297
Query 299 ATGTCGTTTGACGACTTCAATGAAGAAGATTCCAAGGATTTGTACCTGACCGATGTCGAA 358
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGTCGTTTGACGACTTGAACGAAGAAGATTCCAAGGATTTGTACCTGACCGATGTCGAA 357
Query 359 TTTGTGAAGGAGTGGTTGCCTAGGGTTCGTGAAGACCTGGAGAAT-TTGTCAATTTCGGA 417
|| | |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 358 TTCGCGAAGGAGTGGTTGCCTAGGGTTCGTGAAGATCTGGA-AATGTTGTCAATTTCGGA 416
Query 418 TTTCTGGATTCAATCTTGCTGGAGAAAATCGGATATTTTGGCGCTCATTTCTTCAAACTG 477
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TTTCTGGATTCAGTCTTGCTGGAGAAAGTCGGATATTTTGGCGCTCATTTCTTCAAACTG 476
Query 478 TAGTAAGTTAGTGAAACTAGAGGTGAAGAATGCTTGGCTCTCTGTAGTTGGCCTGACTGA 537
|||||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 477 TAGTAAGTTAGTCAAACTAGAGGTGAAGAATGCTTGGCTCTCAGTTGTTGGCCTGAGGGA 536
Query 538 GATGCCTAATCTCAGATACTTGACACTTGAATTCA-TCAGACTTGATGATGAGAATCTAG 596
|||| ||||||| ||| | ||||| ||||| |||| || |||||||||||||||||||||
Sbjct 537 GATGTCTAATCTTAGACATTTGACCCTTGAGTTCATTC-GACTTGATGATGAGAATCTAG 595
Query 597 AGAAGGTCAATGATTGTTTCCCTTTTCTTCAAGAGCTGAATTTGATTGGTGTTGGAGGAC 656
||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 596 AGAAGGTCAATGATTGTTTCCCTTTCCTTCAAGTGCTGAATTTGATTGGCGTTGGAGGAC 655
Query 657 TTAAGGAACCAAGAATCCATTTTCTTCACCTAAAGAGTTGTCATTGGACTGTGTCGAATG 716
|||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 656 TTAAGGAACCGAGAATTCATTTTCTGCATCTAAAGAGTTGCCATTGGACTGTGTCGAATG 715
Query 717 CTCCACTTTCCTTGGCTATCGTGGCGCCAAACCTGCTTGAACTGAAGCTAAAATGCAACA 776
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 716 CTCCACTTTCCTTGGCTATAGTGGCGCCAAACCTTCTTGAACTCAAGCTAAAATGCAACA 775
Query 777 AGCCTAAATCTCTTCTAGTTGAAACGCCCAAGTTGGTGCAATGCCATCTTTCTGTGGAGG 836
|||||||||||||| || | ||||| |||||||||||| ||| |||| ||||||| ||||
Sbjct 776 AGCCTAAATCTCTTATACTCGAAACACCCAAGTTGGTGAAATTCCATTTTTCTGTAGAGG 835
Query 837 ACGCTGAAGGTGTTAGTTTTGGGGAGTTTCAAGATCTGAAGACTTTAGAGCTCGTATCTC 896
| || ||||||||| |||| |||||||||| ||||||||| |||| |||||| ||||||
Sbjct 836 ATGCCGAAGGTGTTGGTTTCGGGGAGTTTCGAGATCTGAATTCTTTGGAGCTCATATCTC 895
Query 897 CTGATATGTACAGATTAATCAGCAACATCAGTTTTGGCAACAAGATCAAAAAGCTTGCAG 956
|||| ||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 896 CTGACATGTACAGACTAATCAGCAACATCCGTTATGGCAACAAGATCAGAAAGCTTGCAG 955
Query 957 TGGATTCAGTAAAGTCTATAGAACAATCTGAGAGGTTAGAACTTGGACTGGCAACAATCC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 956 TGGATTCAGTAAAGTCTATAGAACAATCTGAGAGGTTAGAACTTGGACTGGGAACACTCC 1015
Query 1017 TCAAAGCATTCCCTGGCATTACTTCTCTTAGTTTGAGTCCCAGGACTTGGTCAGATATCG 1076
|| ||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCCAAGGATTCCCTGACATCAGTTCTCTTAGTTTGAGTCCCAGGACTTGGTCAGATATCG 1075
Query 1077 AAACACATTTCCAAAGCCAAGGCGGCCTAGGTGATATGAAGGGAACAGACAGCCTGAAGC 1136
|||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1076 AAACACATTTCCAAAGCCAA---GGCCTAGGACATATGAAGGGAACAGCCAGCCTGAAGC 1132
Query 1137 AAATAACAGCACGTGTACAGATGTCAGATCATACCAATGTTCATCAAACAGTTTCTTTCA 1196
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AAATAACAGCACGTGTTCAGATGTCAGATCATACCAATGTTCATCAAACAGTTTCTTTCA 1192
Query 1197 TCAGGTCTATTGTTAATAAGTACAGAGGTTTGACAGACATGAGACTGATGATTCACCAGG 1256
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TCAGGTCTATTCTTAATAAATACAGAGGTTTGACAGACATGAGACTGATGATTCACCAGG 1252
Query 1257 ACAAAGATCCTAGAGTAAGAAGCAATCTGATATCGACATGTATGATGAGTAACCCGAGAG 1316
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 1253 ACAAAGATCCTAGAGTAAGAAGCAATCTGATATCGGCGTGTATAATGAGTAACCCGAGAG 1312
Query 1317 TGAGATGGAAATGGGGAATGTGGGCTGAAGGAGGTGAAGATATGTGGGTCTAAGTCCGAA 1376
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1313 TGAGCTGGAAATGGGGAATGTGGGCTGAAGGAGGTGAAGATATGTGGGTCTAAGACCTAA 1372
Query 1377 CATTCAAGTCTGAAACTTGGAAT-CT-T--------CT-GtgatgatgatgatgatgGTA 1425
||||||||||||||||||| ||| || | || |||||||||||||||||||||
Sbjct 1373 CATTCAAGTCTGAAACTTG-AATTCTCTTGTATATACTTGTGATGATGATGATGATGGTA 1431
Query 1426 ACAAAGAATGTGTCAAGAGTGTTTTCATATGTTGT-T-----GTGTTGTGCTGATGCTTT 1479
| ||||||||||||||||||||| ||||| |||| | |||||||||||| |||
Sbjct 1432 ATGAAGAATGTGTCAAGAGTGTTTCCATATATTGTGTAACTTGTGTTGTGCTGAAACTTG 1491
Query 1480 TCAGGGAGTTATAATGCTT--CATGAAGAGTTTGTATTCAAATATAGATAGTTATTCACC 1537
||| ||| |||||| |||| |||||||||||||||| |||||||||| | ||| |||||
Sbjct 1492 TCATGGATTTATAAAGCTTTTCATGAAGAGTTTGTATACAAATATAGAGATTTAGTCACC 1551
Query 1538 ATGTAAGATCTATAGCTTCACCATATAAAACAAGATTTGGATTTG 1582
||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1552 ATGTAAGGTCTATAGCTTCACCGTATAAAACAGGATTTGGATTTG 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5