BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29430.1
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491815 jgi|Araly1|491815|fgenesh2_kg.7__1248__AT4G29430.1 1005 0.0
> Ahg491815 jgi|Araly1|491815|fgenesh2_kg.7__1248__AT4G29430.1
Length=633
Score = 1005 bits (544), Expect = 0.0
Identities = 606/634 (96%), Gaps = 12/634 (2%)
Strand=Plus/Plus
Query 36 GAGAAATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCTGAGAGAC 95
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GAGAAATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCGGAGAGAC 60
Query 96 GAGGAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCGTTCTTGAGAA 155
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 61 GAGGAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCATTCCTGAGAA 120
Query 156 TCATGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTGTATGATCCACATAGAGTTGGGA 215
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 121 TCATGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTCTATGATCCACATAGAGTTGGTA 180
Query 216 GAATAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTACAGGCAAG 275
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GAATAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTATAGGCAAG 240
Query 276 ACGTTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACACTTCCAACACGTCAGTGGG 335
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ACGTTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACTCTTCCAACACGTCAGTGGG 300
Query 336 GTTATGTTGTAATCACAACTCCGGATGGGATTTTGGACCATGAAGAAGCAATCAAACGGA 395
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GTTATGTTGTAATCACAACCCCGGATGGAATTTTGGACCATGAAGAAGCAATCAAACGGA 360
Query 396 ATGTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGAATAGCTTGAGCTAGCACATGGCAAG 455
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 ATGTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGAATAGCTTAAGCTAGCACATGGCAAG 420
Query 456 AACCTTCTAGTGTCA-AAGGATTCAACAAAAGATTGAAGTTTCGGTCCTTCT-CCTGTTG 513
|||||| |||||||| ||||||||||| |||| ||||||||||| ||||||| ||| |||
Sbjct 421 AACCTTATAGTGTCATAAGGATTCAACGAAAGTTTGAAGTTTCGATCCTTCTTCCTTTTG 480
Query 514 Ctttt-tgttttttGTAACTTGCATTGTCTTTGAACAGATTGGCAATTATTAGATAACAC 572
||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTTTCTCTTTTT-GTAACTTGCATTGTCTTTGAACAGATTGGCAATTATTAGATAACAC 539
Query 573 ATTT-GTTGCTAAATTCAAAGATCTTGTTGTTA-G------TTTATATTTTGGACGAGAA 624
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 540 ATTTTGTTGCTAAATTCAAAGATCTTGTTGTTATGACAACATTTATATTTTGGACGAGAA 599
Query 625 ATTTGTTCTTCCATAGCTATCTGAATAATCTATA 658
||||||||||||||||||||||||||||||||||
Sbjct 600 ATTTGTTCTTCCATAGCTATCTGAATAATCTATA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24513035631
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5