BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29440.1
Length=3614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491814 jgi|Araly1|491814|fgenesh2_kg.7__1247__AT4G29440.1 3064 0.0
> Ahg491814 jgi|Araly1|491814|fgenesh2_kg.7__1247__AT4G29440.1
Length=3422
Score = 3064 bits (1659), Expect = 0.0
Identities = 2015/2181 (92%), Gaps = 47/2181 (2%)
Strand=Plus/Plus
Query 19 CAGATCACAAAATTTCCATCTGA-TTTCCTCAACAAAAACCCTTAAAGCCCAGATTTTTC 77
||||||||||||||||||||||| |||| |||||||||||||| ||| || ||||||||
Sbjct 1 CAGATCACAAAATTTCCATCTGATTTTCTTCAACAAAAACCCTAAAATCCTTGATTTTTC 60
Query 78 GTTTCAATTGTGTGTACTCGGAGACTCCACAAGACCTCAAAAGGCTTGACCTTTCGTTTC 137
||||||||| | |||||||||||||| | | |||||||||||||||||| ||||||||||
Sbjct 61 GTTTCAATT-T-TGTACTCGGAGACT-CGC-AGACCTCAAAAGGCTTGATCTTTCGTTTC 116
Query 138 TCTAATCAAG-TTTCG--CTCAATGAAGAAGGTGCTTCATCGAAGTTTCAAGCCTGCCAA 194
||| |||||| ||||| ||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 117 TCTGATCAAGTTTTCGCCCTC-ATGAAGAAGGTGCTTCATCGAAGTTTTAAGCCTGCGAA 175
Query 195 ATGCAAAATTGCTTTACAAATGGCGGCTTCACGCCTGAAAATCCTGAAGAACAAAAAGGA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATGCAAAATTGCTTTACAAATGGCGGCTTCACGCCTGAAAATCCTGAAGAACAAAAAGGA 235
Query 255 TACACAGATTAAGCAACTGAGGAGAGAATTAGCTCATTTGCTTGAATCCGGCCAAACCCA 314
|||||||||||| ||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct 236 TACACAGATTAAACAATTGAGGAGAGAATTAGCTCAATTGCTTGAGTCTGGCCAAACCCA 295
Query 315 AACAGCTAAAATTCGGGTGGAGCATGTGGTAAGAGAAGAAAAGACAGTAGCTGCTTATGA 374
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 296 GACAGCTAAAATTCGGGTGGAGCATGTGGTGAGAGAAGAGAAGACAGTGGCTGCTTATGA 355
Query 375 GCTCGTTGGTATATATTGTGAACTTCTTGTTGCTCGTTTGGGTGTCATTGACTCTCAAAA 434
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 ACTCGTTGGTATATATTGTGAACTTCTTGTTGCTCGTTTGGGTGTGATTGACTCTCAAAA 415
Query 435 GACATGTCCTAATGATCTTAAGGAAGCTGTCGCAAGTGTCTTATACGCTTCTCAAAGGTT 494
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 GACCTGTCCTAATGATCTTAAGGAAGCTGTCGCGAGTGTCTTATACGCTTCTCAAAGGTT 475
Query 495 AACAGATGTTGGGGAGCTCTCAGATATTGTTAAGCATTTCTCTGCAAAGTATGGTAAAGA 554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AACAGATGTTGCGGAGCTCTCAGATATTGTTAAGCATTTCTCTGCAAAGTATGGTAAAGA 535
Query 555 TTTTGTTTCAGCTGCTATTGGTTTGCAACCGGATTCTGGTGTGAGTCGTTTGTTAGTAGA 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 536 TTTTGTTTCAGCTGCTATTGGTTTGCAACCGGATTCTGGTGTGAGTCGTTTGTTGGTGGA 595
Query 615 GAAATTGTCTGTTAAAGCTCCTGATGGTCCAACAAAGATCAAAATTTTGACGGAGATTGC 674
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 GAAATTGTCTGTTAAAGCTCCTGATGGTCCAACGAAGATCAAAATTTTGACGGAGATTGC 655
Query 675 TACGCAGCATAATGTAACTTGGGAAGCAGAGTCTTTGGTTGAATCAGATCCAAAGGAAAC 734
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 656 TACGCAGCATAATGTAACTTGGGAAGCAGAATCTTTGGTTGAATCAGATCCCAAGGAAAC 715
Query 735 CATGTCGGCGAGTGGAGCAAGTTCATCTGTG--TCTCAGCCAGCAACTGGAATAAAGTCG 792
| | | |||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 716 CGTATTGGCGAGTGGAGCAAGTTC--CTGTCACTCTCAGTCAGCAACTGGAATAAAGTCG 773
Query 793 GAGTCTTCAAGAATCCAGAA-CAATCAACCTCCAGTATTTCAAGCTGCAGCTACTGTCAA 851
|||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 774 GAGTCTTCAAGAATCC-GAAACAATCAACCTCCAGAATTTCAAGCTCCAGCTACTGTCAA 832
Query 852 TGTGTCGCAGAATTCATATGCAACTGATGGGAGATCTTCAAGCCGCATGACATCTACTGA 911
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 833 TGTGTCGCAAAATTCATATGCAAGTGATGGAAGATCTTCAAGCCGCATGACATCTGCTGA 892
Query 912 TTTCAACGTTGGGAAGACACCTGATCACTATCATCAAGACCCAAAACCTTCTGGAGATAG 971
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTTCAACGTTGGGAAGACAGCTGATCACTATCATCAAGACCCAAAACCTTCTGGAGATAG 952
Query 972 AGTTGACGGTAGAGAACACAGGGATCACAATCCAGGTCATGGGGATACATCTCCATTCGA 1031
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 953 AACTGACGGTAGAGAACACAGACATCACAATCCAGGTCATGGGGATTCATCTCCATTCGA 1012
Query 1032 AAC-GAAATTTGTTGATGCAACGAGTGCTGCACGTGCTGCTGCTGAATCTGCGGAAAGAG 1090
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1013 AACAGAA-TTTGTTGATGCAACGAGTGCTGCACGTGCAGCTGCTGAATCTGCGGAAAGAG 1071
Query 1091 CGAGTTTTGCTGCACGTAG-AGCTGCTGAGCTTTCAAGTAAAGAAAGAATGATGATGATG 1149
||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1072 CGAGTTTTGCTGCACGT-GCAGCTGCTGAGCTTTCAAGTAAAGAAAGAATGATGGCGATG 1130
Query 1150 CAGAATTCAACAGAGTCGCGGAACTCATCCTCGTATGAGAATCTTA-GAAGCAATCCCCC 1208
|||||||||| ||||||||||||||||||||| ||||| ||| ||| ||| |||||||||
Sbjct 1131 CAGAATTCAAAAGAGTCGCGGAACTCATCCTCATATGATAAT-TTAAGAAACAATCCCCC 1189
Query 1209 ACATAGTCGTACTAGTAGCTCAAATATGCAAGGCGGAGGTTTTGGTAAAGAAGAGTTATT 1268
||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| || ||
Sbjct 1190 ACATAGTCGTACTAGTACCTCAAATGTGCAAAGCGGAGGTTTTGCTAAAGAAGAATTGTT 1249
Query 1269 AAAAAGCAATAACAGGCAAGTAGATCAATCTACTACTACTACTAGAGCAGAGTCATCTAA 1328
|| ||||| ||||| ||||| ||| ||||||||||||| | | ||||||| |||||
Sbjct 1250 AAGAAGCAGTAACAAGCAAGAAGACCAATCTACTACTAGT----G--CAGAGTCTTCTAA 1303
Query 1329 GAAGACTGTTGATGAGCTATCAGAAAATACTTCATGGAGGAGAGGTCATTCTCGGGAGAA 1388
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1304 GAAGACTGTTGATGAGCTATCAGAAAATGCTTCATGGAGGAGAGATCATTCTCGGGAGAA 1363
Query 1389 CTCATTGGAGATGAGGCCGAATGATTCCTTTGCTAAAATAGGTAGAGAGAAACAGCAGCC 1448
|||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1364 CTCATTGGGGATGAGGCCGAATGATTCCTTTGCTAGAATAGGTAGAGAGAAGCAGCAGCC 1423
Query 1449 AGGTATGGATGATATAAACCTTAGCAGTTCAGCAGATGTTCTAAATAAGAAACAATCAAG 1508
| ||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1424 AAGTATGAATGAGATAAACCAAAGCAGTTCAGAAGATGTTCTAAATAAGAAACAATCAAG 1483
Query 1509 CCGAGCTTCATCGCATTCACCGTCAAGCAATTTTTCCGATGATAATGATGTCACTGCCTT 1568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1484 CCGAGCTTCATCGCATTCACCGTCAAGCAATTTTTCCGATGACAATGATGTCACTGCATT 1543
Query 1569 GGACCATATCGATTCACCAAGTATCTTTGAGGAAAACAAATTTCAGAGCACTGTTGGAGA 1628
||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||
Sbjct 1544 GGACCATATCGATTCACCAAGCATCTTGGAGGAAAACCGATTTCAGAGTACTGTTGGAGA 1603
Query 1629 TAGAGAGAGCTACAATGACAGTCCTGTTGTTGTTGTTGCTCCGGCTTTTGATGACTATAG 1688
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1604 TAGAGAGAGCTACAATGACGGTCCTGATGTTGTTGTTGCTCCGGCTTTTTATGACTATAG 1663
Query 1689 CTCGTTTTTTGACAAACCTCAATTCGACACAGAAGATGCTTATCATGATGAACCAGAACA 1748
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1664 CTCGTTTTTTGACAAACCTCAATTCGACACAGAAGATGCTTGTCATGATGAACCAGAACA 1723
Query 1749 AGGATTAGGATTTTCATTGCTTGGCAGTAGCAGCAAAACATCGGATCATATGCCTACAGA 1808
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1724 AGGATTAGGATTTTCATTGCTTGGCAGTAGCAGCAAAACATCTAATCATATGCCTACAGA 1783
Query 1809 GATAAGTTCATGGAGCCTCGAAGGACACAAGGATCTGGGA-AAACTCAGCTCAGCCTCAA 1867
||||||||||||||| ||||||||||||| | |||| || |||| ||||||||||||||
Sbjct 1784 AATAAGTTCATGGAGCTTCGAAGGACACAATGCTCTGAGACAAAC-CAGCTCAGCCTCAA 1842
Query 1868 CCTCACAGGTTCTTGAAAAGGAGAAGCCAAGTTCTCCTCCAACATTTGATGATGGTCCTA 1927
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1843 CCTCACAGGTTCTTGAAAAGGAGAAGCCAAGTTCTCC---AATATTTGATGATGGTCCTA 1899
Query 1928 CAAGTCCTCCAGCTTCTCTGCATGAGCCTGAGCC-G-----TCTGCAAAGTTTGATGATT 1981
||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1900 CAAGTCCTCCAGCCTCTCTGCATGAGCCTGAGCCTGGGCCGTCTGCAAAGTTTGATGATT 1959
Query 1982 ATGACCGAGATTCTGAAAGTGAAGAAGACAATCTAGGAA-----G-AC-T-TTCC-GGAC 2032
|||||| ||||||||||||||||||||||||| || || | | | || | ||||
Sbjct 1960 ATGACCAAGATTCTGAAAGTGAAGAAGACAATTTAAAAAACAAAGGAAATATTTCTGGAC 2019
Query 2033 GTGCAGAAGGAAAGTCGAAGCTGACAGCTCAGAAGTCTCACATGTCTGAAGGTCCTGATG 2092
|| ||||| |||| ||||||||| | |||||||||| || |||||||||| ||||||||
Sbjct 2020 ATGTAGAAGAAAAGCCGAAGCTGAAATCTCAGAAGTCCCAAATGTCTGAAGCTCCTGATG 2079
Query 2093 ATTTAGGACGTTACTTTTTCCCATCAGACACAGAAGACCAAGGAGATGATTCCAAAACAC 2152
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 2080 ATTTAGGACGCTACTTTTTCCCATCAGATACAGAAGACCAAGGAGATGATTCCAAGATAC 2139
Query 2153 AGGAAGAATCTGACGCAGAGA 2173
|||||||||| ||| |||||
Sbjct 2140 AGGAAGAATCCGACATAGAGA 2160
Score = 1035 bits (560), Expect = 0.0
Identities = 863/1006 (86%), Gaps = 33/1006 (3%)
Strand=Plus/Plus
Query 2215 GAGAATGAAACGACTCTCCCATCTTATGG-ATCGAGTCCGCCAAGAGACAAGACGTCGTC 2273
||||||||||||||||||||||||||||| || |||||| |||| ||| ||||| | |||
Sbjct 2157 GAGAATGAAACGACTCTCCCATCTTATGGAAT-GAGTCCCCCAAAAGAGAAGACATGGTC 2215
Query 2274 TAAATCTATAAAAGAGTATCTTCCAACAGAGGTTGATCCGTCAAGGTCTTCTTCTCTGCA 2333
|||||| | |||||| || | ||||| |||||||||||||| |||||||||||| | ||
Sbjct 2216 CAAATCTGTTAAAGAGCATGTCCCAACGGAGGTTGATCCGTCGAGGTCTTCTTCTTTTCA 2275
Query 2334 GACAGCTTCTTCTAGCAGTATTAGGAATGAACTTTACACTCAGAAAGCAAGTAAC-TCAG 2392
||||| | | ||||| |||||||||||||| |||||||| ||| | |
Sbjct 2276 GACAG--------A-C------AGGAAAGAACTTTACACTCAAAAAGCAAGCAACAT-GG 2319
Query 2393 ACAAAAGACCAAGCTCTATACCTCCAGATTCATCTTCTAGTGATGATGAATCAGATATGG 2452
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2320 ACAAAAGACCAAGCTCTATACCTCCAGATTCATCTTCTAGTGATGATGAATCAGAGGTTA 2379
Query 2453 AACTTCCAAAGAGAGTTTCTT-TCAGATATCAAGAGAAAAGAACTGAGTCAAGAACCCGG 2511
|||||| ||||| ||||| | ||||||||||| |||||| ||||||||||||||| |
Sbjct 2380 AACTTCGGGAGAGATTTTCTGCT-AGATATCAAGATAAAAGAGCTGAGTCAAGAACCCCG 2438
Query 2512 CCCACACATCTACATTCGGGTGTCAGCCATAAGGACTTGGAGGAAGAAATCCCGACTCGA 2571
||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||
Sbjct 2439 TCCACACATCTACATTCGCATGTCAGCCACGAGGACTTGAAGGAAAAAATCCCGACTCGA 2498
Query 2572 GCTTCTACCAGAAGTCAAGATAGGAGGACCCACAAGACCACCCCTGCCTCTGCTTCTGCT 2631
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 2499 GCTTCTACCAGAAGTCATGAGAGGAGGACCCACAAGACCACCCCTGCCTCTGCTTCCGCT 2558
Query 2632 TCATATTTTCACACAATGTCCAGTGACGATGAAGATGAGAAAGAAGTCCATAGAGATACT 2691
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 TCATATTTCCATGTAATGTCCAGTGACGATGAAGATGAGAAAGAAGTCCATAGAGATACT 2618
Query 2692 GCACACATTCAAACCAGGCCTTATATTTCCATCTCAAGAAGAACAAAGGGCCAAGAGAGA 2751
|||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2619 GCACGCACCCAAACCAAGCCTTCTATTTCCATCTCAAGAAGAACAAAGGGCCAAGAGAGA 2678
Query 2752 AGACCATCCCTCGTTACTGCAAAAATTGACAAAGTTTCTTTTGATGAAGAATCTCCACCA 2811
||||||||||| |||||||| |||| ||| | ||| ||| |||| |||| ||||| |||
Sbjct 2679 AGACCATCCCTGGTTACTGCGAAAACTGAGACAGTCTCTCATGATCAAGAGTCTCCTCCA 2738
Query 2812 AAGCTAAGTCCTGAGGCCAAGCCACT-GACTAAGCAACAAGG-ATCAGCTTCCTCTTTAA 2869
|||| ||||||||||||||||||||| | |||||||||| || |||||| || |||| ||
Sbjct 2739 AAGCCAAGTCCTGAGGCCAAGCCACTAG-CTAAGCAACA-GGTATCAGCCTCTTCTTCAA 2796
Query 2870 GCTATCTTCCCAAAACTGAGAAAGTTTCTCACGATCAAGAATCTCATCCAAAGCTAGGT- 2928
|||||||||| |||||||| |||| |||||||||||| ||||||| |||||||||| ||
Sbjct 2797 GCTATCTTCCAAAAACTGACAAAGCTTCTCACGATCATGAATCTCCTCCAAAGCTAAGTA 2856
Query 2929 CTTGGGGCCAAACCACTGATTAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCA 2988
|| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 CT-GAGGCCAAGCCACTGACTAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCA 2915
Query 2989 AAAACCAACAAAGCTTCTCCCGATCAAGATTCTCCTCCAAAGCTAGTTCCAAAGGAAAAA 3048
||||| |||||||||||| ||||||||| ||| |||||||||||| || ||||| ||
Sbjct 2916 AAAACTGACAAAGCTTCTCACGATCAAGAATCTACTCCAAAGCTAGGTCTAAAGGCCAAG 2975
Query 3049 CCAGCAGCTAAGCAACGAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACAAA 3108
||||| |||||||||| |||||||||| |||||| ||||| ||||||||||||||| |||
Sbjct 2976 CCAGCGGCTAAGCAACAAGGATCAGCTACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAA 3035
Query 3109 G-CTTCTCCCGATCA-AGATTCTCCTCCAAAG-CTACTTCCAAAGGAAAAGCCAGCAGCT 3165
|| ||| | || | ||| |||||||||||| | | ||| | ||| ||| || |||
Sbjct 3036 ATCT-CTCACTAT-AGAGAATCTCCTCCAAAGTCAAGTTC-AGAGGCTAAGTCAATGGCT 3092
Query 3166 AAGCAACAAGGATCAGCAACTTCTTCAAGCTCTCTTCCAAAAACTG 3211
|||||| |||| | ||| ||||||||||||| ||||| |||||||
Sbjct 3093 AAGCAAGAAGGGTTAGCTTCTTCTTCAAGCTCGCTTCCCAAAACTG 3138
Score = 929 bits (503), Expect = 0.0
Identities = 661/735 (90%), Gaps = 20/735 (3%)
Strand=Plus/Plus
Query 2881 AAAACTGAGAAAGTTTCTCACGATCAAGAATCTCATCCAAAGCTAGGTCTTGGGGCCAAA 2940
|||||||||| ||| ||||| |||||||| |||| |||||||| | ||| || ||||||
Sbjct 2700 AAAACTGAGACAGTCTCTCATGATCAAGAGTCTCCTCCAAAGCCAAGTCCTGAGGCCAAG 2759
Query 2941 CCACTGA-TTAAGCAACAAGG-ATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACCAACA 2998
||||| | |||||||| ||| |||||| ||||||| ||||| |||||||||||| |||
Sbjct 2760 CCACT-AGCTAAGCAAC-AGGTATCAGCCTCTTCTTCAAGCTATCTTCCAAAAACTGACA 2817
Query 2999 AAGCTTCTCCCGATCAAGATTCTCCTCCAAAGCT-AGTTCCAAAGGAAAAACCAGCAG-C 3056
||||||||| |||||| || |||||||||||||| || | | ||| || ||| | | |
Sbjct 2818 AAGCTTCTCACGATCATGAATCTCCTCCAAAGCTAAG-TACTGAGGCCAAGCCA-CTGAC 2875
Query 3057 TAAGCAACGAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACAAAGCTTCTCC 3116
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2876 TAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACAAAGCTTCTCA 2935
Query 3117 CGATCAAGATTCTCCTCCAAAGCTACTTCCAAAGGAAAAGCCAGCAGCTAAGCAACAAGG 3176
||||||||| ||| ||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 2936 CGATCAAGAATCTACTCCAAAGCTAGGTCTAAAGGCCAAGCCAGCGGCTAAGCAACAAGG 2995
Query 3177 ATCAGCAACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAAATCTCTCACTATAGAGAATC 3236
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2996 ATCAGCTACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAAATCTCTCACTATAGAGAATC 3055
Query 3237 TCCTTCAAAGCT-AACTCCAGAGGCTAAGTCAATGGCTAAGCAAGAAGGATTAGCTTCTT 3295
|||| ||||| | || | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3056 TCCTCCAAAG-TCAAGTTCAGAGGCTAAGTCAATGGCTAAGCAAGAAGGGTTAGCTTCTT 3114
Query 3296 CTTCAAGCTCGCTTCCCAAAACTGTGACATCACCTGACCCAGAAACTCCGGCAAAGGAGA 3355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3115 CTTCAAGCTCGCTTCCCAAAACTGTGACATCACCTGACCCAGAAACTCCGGCAAAGGACA 3174
Query 3356 AAGCTAGCCATGTACATCCCAAACTCCCAGATTACGATGACATATTTGCCAAGCTCGGGG 3415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3175 AAGCTAGCCATGTACATCCCAAACTCCCAGATTACGACGACATATTTGCCAAGCTCGGGG 3234
Query 3416 CTCTTCGTCGCTGAATTCTTCCCGTT-TGTTTATATATACATACATACATATTCATTGTT 3474
|||||||||||||||||||||||| | |||| ||||||||||| | ||| | || ||
Sbjct 3235 CTCTTCGTCGCTGAATTCTTCCCGCTCTGTTGATATATACATAT-T-CAT-TG--TT-TT 3288
Query 3475 CAATTAGCCCTCAATTCTTTTCTTTGATTGGTTTGCTTGTAGATTTGAACTTGAATTTCG 3534
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3289 -A-TTAGCCCTCAATTCTTTTCTTTGATTGGTTTGCTTGTAGATT-GAACTTGAATTTCG 3345
Query 3535 CATCCTGAGCATAACTTTTTTGCCGTGAGATATCTCATCTGTTTTGTATTACATGTTTGG 3594
||||| ||| |||||||||| |||||||| ||||||||||||||| | ||||||||||||
Sbjct 3346 CATCCCGAGGATAACTTTTTGGCCGTGAGGTATCTCATCTGTTTTCTGTTACATGTTTGG 3405
Query 3595 CTTTCTTGTCATATA 3609
||| |||||||||||
Sbjct 3406 CTTCCTTGTCATATA 3420
Score = 305 bits (165), Expect = 1e-81
Identities = 283/339 (83%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 2771 CAAAAATTGACAAAGTTTCTTTTGATGAAGAATCTCCACCAAAGCTAAGTCCTGAGGCCA 2830
|||||| |||||||| |||| ||| | |||||||| |||||||||||| |||||||||
Sbjct 2806 CAAAAACTGACAAAGCTTCTCACGATCATGAATCTCCTCCAAAGCTAAGTACTGAGGCCA 2865
Query 2831 AGCCACTGACTAAGCAACAAGGATCAGCTTCCTCTTTAAGCTATCTTCCCAAAACTGAGA 2890
||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
Sbjct 2866 AGCCACTGACTAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACA 2925
Query 2891 AAGTTTCTCACGATCAAGAATCT-CATCCAAAGCTAGGTCTTGGGGCCAAACCA-CTGAT 2948
||| ||||||||||||||||||| | ||||||||||||||| |||||| ||| | | |
Sbjct 2926 AAGCTTCTCACGATCAAGAATCTAC-TCCAAAGCTAGGTCTAAAGGCCAAGCCAGCGGCT 2984
Query 2949 TAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACC-AACAAAGCTTCTC 3007
|||||||||||||||||| |||||| ||||| |||||||||||| || ||| || |||
Sbjct 2985 -AAGCAACAAGGATCAGCTACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAAATCT-CTC 3042
Query 3008 CCGATCA-AGATTCTCCTCCAAAG-CTAGTTCCAAAGGAAAAACCAGCAGCTAAGCAACG 3065
| || | ||| |||||||||||| | ||||| | ||| || || ||||||||| |
Sbjct 3043 ACTAT-AGAGAATCTCCTCCAAAGTCAAGTTC-AGAGGCTAAGTCAATGGCTAAGCAA-G 3099
Query 3066 A-GGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTG 3103
| || | ||||||||||| ||||| ||||| |||||||
Sbjct 3100 AAGGGTTAGCTTCTTCTTCAAGCTCGCTTCCCAAAACTG 3138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136512514351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5