BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29450.1
Length=2592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945073 jgi|Araly1|945073|scaffold_701302.1 442 6e-123
> Ahg945073 jgi|Araly1|945073|scaffold_701302.1
Length=389
Score = 442 bits (239), Expect = 6e-123
Identities = 258/267 (97%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 2327 AGCGAGCCATCATCAAAACAGAAGAAGGAGACAATATCAGCGTTATTCACTACGTTTGGC 2386
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 103 AGCGAGCCATCATCAAAACAGAAGAAGGAGACAATATCAGCGTGATTCACTACGTTTGGC 162
Query 2387 CGTTCTTTGAGGCTAGAGAACTAGACGGCGTCGTGGACCCGCTGCTTCGGGGAGACTTCT 2446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CGTTCTTTGAGGCTAGAGAACTAGACGGCGTCGTGGACCCGCTGCTTCGGGGAGACTTCT 222
Query 2447 CGCAGGACTCAGCTTGGAAGTTTGTGGATGTGGCAATGTCTTGCGTCAGAGATAAAGGAT 2506
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGGAGGACTCAGCTTGGAAGTTTGTGGATGTGGCAATGTCTTGCGTCAGAGATAAAGGAT 282
Query 2507 CGAATAGACCAACGATGAACCAGATCGTAGCGGAGCTGAAACAGTGCCTAGCTGCTGAGC 2566
| ||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 283 CCAATAGACCAACAATGAACCAGATCGTGGCGGAGCTGAAACAGTGCTTAGCCGCTGAGC 342
Query 2567 TGGAC-CGTGAGCCACAGAGCCAGTGA 2592
||| | |||||||||||||||||||||
Sbjct 343 TGG-CTCGTGAGCCACAGAGCCAGTGA 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97739568670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5