BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29460.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1 904 0.0
Ahg491810 jgi|Araly1|491810|fgenesh2_kg.7__1243__AT4G29470.1 577 5e-164
Ahg480501 jgi|Araly1|480501|fgenesh2_kg.3__3202__AT2G19690.1 226 2e-58
> Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1
Length=647
Score = 904 bits (489), Expect = 0.0
Identities = 549/578 (95%), Gaps = 4/578 (1%)
Strand=Plus/Plus
Query 1 AGAAAGATGATCACCGGGC-TTGCTTTGTCACGTGTTGCTTTCGGTTTAACCGCCTTCCT 59
|||||||||||| || ||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 AGAAAGATGATC-CCCGGCGTTGCTTTGACACGTGTTGCTTTCGGGTTAACCGCCTTCCT 59
Query 60 CCTCCTCGCCGTCGTTAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACAGAACTG 119
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 CCTCCTCGCCGCCGTGAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACAAAACTG 119
Query 120 CAACAGTCTTGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGG 179
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 120 CAACAGTCTTGGCATTCACTATGGGAAGTACTGTGGGATAGGTTACTTTGGATGTCGAGG 179
Query 180 AGAGCCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGATTT 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAACCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGATTT 239
Query 240 AAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAG 299
Query 300 CAAATCTATTAAAC-ACTCTAACGGAGAAAAGATTGGATTCTCCACACAATGCCCTTATT 358
||||| ||||||| | |||||||| ||||||||||||||||||| |||||||||||||
Sbjct 300 AAAATCGATTAAACGA-TCTAACGGTCAAAAGATTGGATTCTCCACTCAATGCCCTTATT 358
Query 359 CGATAGTGATACCAACCGTGTTCAATGGAATGGATTACGGCATTTTCTTCAGTGGGATAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGATAGTGATACCAACCGTGTTCAATGGAATGGATTACGGCATTTTCTTCAGTGGGATAG 418
Query 419 GTAATATATTTAATCCCCCGGTGCTGGGAAGCGTGCCCGTCGTGGAGGTGGATCTCGCTC 478
|||||||||| || || |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 419 GTAATATATTCAAACCTCCGGTGCTGGGAAGTGTGCCCGTCGTGGAGGTGGATCTCTCTC 478
Query 479 GGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAACTAGGCCTTCAAACAAAAGAAG 538
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 479 GGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAGCTAGGCCTTGGAACAAAAGAAG 538
Query 539 GCTCCAAAGTCTCTGCTTCTTTAAATATATGAGCCCTT 576
||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCTCCAAAGTCTCTGCTTCTTTAAATATATGAGCCCTT 576
> Ahg491810 jgi|Araly1|491810|fgenesh2_kg.7__1243__AT4G29470.1
Length=867
Score = 577 bits (312), Expect = 5e-164
Identities = 472/546 (86%), Gaps = 23/546 (4%)
Strand=Plus/Plus
Query 21 TGCTTTGTCACGTGTTGCTTTCGGTTTAACCGCCTTCCTCCTCCTCGCCGTCGTT-AGCA 79
||||||| ||| ||||||||| ||||||||||||||||||||| ||||||| ||| | ||
Sbjct 116 TGCTTTGACACATGTTGCTTTAGGTTTAACCGCCTTCCTCCTCTTCGCCGTTGTTCA-CA 174
Query 80 GCCAGGAGAAGTGCAGCA-ACACCTGCATTGCACAGAACTGCAACAG-TCTTGGTATTCG 137
|||||||||||||||||| | ||||||||||||||||| ||||| | ||| | ||||
Sbjct 175 GCCAGGAGAAGTGCAGCAGA-ACCTGCATTGCACAGAAATGCAA-TGTTCTCAGCGTTCG 232
Query 138 CTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGGAGAGCCACCTTGTGATGA 197
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 233 ATATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCGGGAGAGCCACCTTGTGATGA 292
Query 198 TCTTGATGCTTGTTGTATGA-CTCATGACAATTGTGTTGATTTAAAAGGTATGACTTACG 256
||||||| |||||||||||| | |||||||||||||||| | |||||||||||||||| |
Sbjct 293 TCTTGATACTTGTTGTATGAAC-CATGACAATTGTGTTGGTGTAAAAGGTATGACTTATG 351
Query 257 TTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAGCAAATCTATTAAACACT 316
|||||||||||||||||||| | |||||||||||| |||||| ||||| || |||| |
Sbjct 352 TTAACTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTAAAAAAATCAATCCAACAAT 411
Query 317 CTAACGGAG-AAAAGATTGGATTCTCCACA-CAATGCCCTTATTCGATAGTGATACCAAC 374
||||| | ||||| ||||||| |||| | |||||||||||||| | ||||||||||||
Sbjct 412 CTAACA-ACCAAAAGGTTGGATTTTCCA-AGCAATGCCCTTATTCAACAGTGATACCAAC 469
Query 375 CGTGTTCA-ATGGAATGGATTACGGCATTTTCTTCAGTGGGATAGGTAATAT-ATTTAAT 432
||||| || | |||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 470 CGTGTACAGA-GGAATGAATTACGGCATTTTCTTCAGTGGGATAGGTAATATCATTAAA- 527
Query 433 CCCCCGGTGCTGGGAAGCGT-GC-CC-GTCGTGGAGGTGGATCTCGCTCGGAGTAAAGTG 489
|| | || | ||||| || || || |||||||||||||| |||||||||||||
Sbjct 528 CCTAAGAAGCCAGCAAGCGCCGCGCCCGTAGTGGAGGTGGATCTAGCTCGGAGTAAAGCA 587
Query 490 GACACAAAGGATGGCCTTGGAACAAAA-CTAGG-CCTTCAAACAAAAGAAGGCTCCAAAG 547
|||||||| ||||||||||||| |||| | ||| ||| ||||||||||| ||||||||||
Sbjct 588 GACACAAAAGATGGCCTTGGAA-AAAATCAAGGACCT-CAAACAAAAGATGGCTCCAAAG 645
Query 548 TCTCTG 553
||||||
Sbjct 646 TCTCTG 651
> Ahg480501 jgi|Araly1|480501|fgenesh2_kg.3__3202__AT2G19690.1
Length=742
Score = 226 bits (122), Expect = 2e-58
Identities = 300/382 (79%), Gaps = 28/382 (7%)
Strand=Plus/Plus
Query 59 TCCTCCTCGCCGTCGTTAGCAGCCAGGAGAAGTGC-AGCAACACCTGCATTGCACAGAAC 117
||||| ||| |||||| |||| ||||| || | || || | ||||||||||||||
Sbjct 169 TCCTCGTCGGTGTCGTTCGCAGTGAGGAG-TGTACAAG-AA-A-GTGCATTGCACAGAAT 224
Query 118 TGCAACAGTCTTGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTAC-TT-TGGATGTC 175
|| ||| |||| |||||| ||||| |||||||||||||| || || || ||||||||
Sbjct 225 TGTGACACTCTTTCTATTCGATATGGCAAGTATTGTGGGATTGG--ACATTCTGGATGTC 282
Query 176 CTGGAGAGCCA-CCTTGTGATGATCTTGATGCTTGTTGTATGACTC-ATGACAATTGTGT 233
|||| ||| | |||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 283 CTGGTGAG-GAGCCTTGTGATGATCTTGATGCTTGTTGTATGG-TCCATGACAGTTGTGT 340
Query 234 TGATTTAAAAGGTATGACTTACGTTAA-CTGCCACAAGCAGTTCAAACGTTGCGTAAACA 292
||| ||||| ||||||||| || | || ||| || ||| ||||| | || ||||||||||
Sbjct 341 TGAGTTAAACGGTATGACTAACAT-AAGCTGTCATAAGAAGTTCCAGCGATGCGTAAACA 399
Query 293 AGCTAAGCAAATCTATTAAACACTCTAACGGAGAAAA-GATTGGATTCTCCACACAA-TG 350
|||||||||| | || ||||| ||||| | |||| | | || || |||||| || ||
Sbjct 400 GGCTAAGCAAAGCGATAAAACAGTCTAAAA-ACAAAAAGGTCGGCTTTTCCACA-AAGTG 457
Query 351 CCCTTATTC-GATAGTGATACCAACCGTGT-TCAATGGAATGGAT-TACGGCATTTTCTT 407
||||||||| | |||| ||||| || ||| |||| ||||||||| | || || || ||
Sbjct 458 CCCTTATTCAG-TAGTCATACCTACGGTGAATCAA-GGAATGGATATT-GGAATCTTATT 514
Query 408 CAGTGGGAT-AGGTAAT-ATAT 427
|||| || ||||||| ||||
Sbjct 515 CAGTCA-ATTAGGTAATGATAT 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5