BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29470.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491810 jgi|Araly1|491810|fgenesh2_kg.7__1243__AT4G29470.1 1175 0.0
Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1 566 1e-160
> Ahg491810 jgi|Araly1|491810|fgenesh2_kg.7__1243__AT4G29470.1
Length=867
Score = 1175 bits (636), Expect = 0.0
Identities = 765/827 (93%), Gaps = 10/827 (1%)
Strand=Plus/Plus
Query 1 AGAATGGGACCTTCCATTCCAAAGAGACACAATTATAATTCTTGGGGTCAGAATTTGAAA 60
||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||
Sbjct 1 AGAATGGGACCTTCCATTCCAAAAAGACTCAATTATACTT-TT-TGGTCAGAATTTGAAA 58
Query 61 GAACAAAACAACAAACTTCTACTGGAGAAGGTAAGATAGAAACATGATCCGCGGTGGTGC 120
||||||||||| ||||||| ||| |||||||| ||||| ||| ||||| ||||||||||
Sbjct 59 GAACAAAACAAGAAACTTCCACTAGAGAAGGTGAGATACAAAGATGATTTGCGGTGGTGC 118
Query 121 TTTGACACATGTTGCTTTAGGCTTAACCGTCTTCCTCCTCCTT-GCCGTCGTTCACAGCC 179
||||||||||||||||||||| ||||||| ||||||||| ||| ||||| ||||||||||
Sbjct 119 TTTGACACATGTTGCTTTAGGTTTAACCGCCTTCCTCCT-CTTCGCCGTTGTTCACAGCC 177
Query 180 AGGAAAAGTGCAGCAAAACCTGCATTGCACAGAAATGCAATGTTCTCGGTATTCGCTATG 239
|||| |||||||||| ||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 178 AGGAGAAGTGCAGCAGAACCTGCATTGCACAGAAATGCAATGTTCTCAGCGTTCGATATG 237
Query 240 GGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGGAGAGCCACCTTGTGATGATCTTG 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 GGAAGTATTGTGGGATAGGTTACTTTGGATGTCCGGGAGAGCCACCTTGTGATGATCTTG 297
Query 300 ATGA-TTGTTGTATG-ACTCATGATAATTGTGTTGATTTAAAAGGTATGACTTATGTTGA 357
|| | |||||||||| || ||||| |||||||||| | |||||||||||||||||||| |
Sbjct 298 AT-ACTTGTTGTATGAAC-CATGACAATTGTGTTGGTGTAAAAGGTATGACTTATGTTAA 355
Query 358 CTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTTAAACAATCAATCCAAGAATCTAA 417
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 356 CTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTAAAAAAATCAATCCAACAATCTAA 415
Query 418 CAACCAAAAGGTTGGATTTTCCAAGGAATGCCCTTATTCAACAGTGATACCAACCGTGTA 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 CAACCAAAAGGTTGGATTTTCCAAGCAATGCCCTTATTCAACAGTGATACCAACCGTGTA 475
Query 478 CAGAGGAATGAATTATGGCATTTTCTTCAGTGGGATAGGTAATATCATTATACCTAAGAA 537
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 476 CAGAGGAATGAATTACGGCATTTTCTTCAGTGGGATAGGTAATATCATTAAACCTAAGAA 535
Query 538 GCCAGCAAGTGCCGGGCCTGTCGTGGAGGTGGATCTGGCACGGAGTAAAGCGGACACAAA 597
||||||||| |||| ||| || |||||||||||||| || ||||||||||| ||||||||
Sbjct 536 GCCAGCAAGCGCCGCGCCCGTAGTGGAGGTGGATCTAGCTCGGAGTAAAGCAGACACAAA 595
Query 598 AGATGGCCTTGGAACAAATCAAGGCCCTCAAACAAAAGATGGCTCCAAAGTCTCTGTTCC 657
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 596 AGATGGCCTTGGAAAAAATCAAGGACCTCAAACAAAAGATGGCTCCAAAGTCTCTGTTTT 655
Query 658 GATGAACCCTTCTCCTTCTTGATCATTAGGTGACTCATAACTCTCAAGTTTTGTAGATTA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GATGAACCCTTCTCCTTCTTGATCATTAGGTGACTCATAACTCTCAAGTTTTGTAGATTC 715
Query 718 TTTAACTTTGTTGTCTT-ATGAAAAATGATCAAGATCTTGAATTCTCTCAGGTTCATGA- 775
|||||||||||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct 716 TTTAACTTTGTTTTTTTCATGAAAAATGATCAAGATCTTGAATTCTGTCAGGTTCATGGC 775
Query 776 TTCCCATGTATTTTATACATTACATTAGTTTCTCTTTTACTCTAGAT 822
|||||||||||| |||||||||| ||||||||| || ||||||||||
Sbjct 776 TTCCCATGTATTATATACATTACTTTAGTTTCTATTGTACTCTAGAT 822
> Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1
Length=647
Score = 566 bits (306), Expect = 1e-160
Identities = 483/567 (85%), Gaps = 18/567 (3%)
Strand=Plus/Plus
Query 98 AGAAACATGATCCGCGGTGGTGCTTTGACACATGTTGCTTTAGGCTTAACCGTCTTCCTC 157
||||| ||||||| ||| | ||||||||||| ||||||||| || ||||||| |||||||
Sbjct 1 AGAAAGATGATCCCCGGCGTTGCTTTGACACGTGTTGCTTTCGGGTTAACCGCCTTCCTC 60
Query 158 CTCCTTGCCGTCGTTCA-CAGCCAGGAAAAGTGCAGCAAAACCTGCATTGCACAGAAA-T 215
||||| |||| || | | ||||||||| ||||||||||| |||||||||||||| ||| |
Sbjct 61 CTCCTCGCCGCCG-TGAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACA-AAACT 118
Query 216 GCAA-TGTTCTCGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCT 274
|||| | ||| || |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 119 GCAACAG-TCTTGGCATTCACTATGGGAAGTACTGTGGGATAGGTTACTTTGGATGTCGA 177
Query 275 GGAGAGCCACCTTGTGATGATCTTGATGATTGTTGTATGACTCATGATAATTGTGTTGAT 334
||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 178 GGAGAACCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGAT 237
Query 335 TTAAAAGGTATGACTTATGTTGACTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTT 394
||||||||||||||||| ||| ||||||||||||||||| | |||||||||||| ||||
Sbjct 238 TTAAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTA 297
Query 395 A-AACAATCAATCCAA-GAATCTAACAACCAAAAGGTTGGATTTTCCAAGGAATGCCCTT 452
| || |||| || || || |||||| |||||| ||||||| |||| |||||||||
Sbjct 298 AGAA-AATCGATTAAACGA-TCTAACGGTCAAAAGATTGGATTCTCCACTCAATGCCCTT 355
Query 453 ATTCAACAGTGATACCAACCGTGTACAGA-GGAATGAATTATGGCATTTTCTTCAGTGGG 511
|||| | ||||||||||||||||| || | |||||| |||| ||||||||||||||||||
Sbjct 356 ATTCGATAGTGATACCAACCGTGTTCA-ATGGAATGGATTACGGCATTTTCTTCAGTGGG 414
Query 512 ATAGGTAATATCATT-ATACCTAAGAAGCCAGCAAGTGCCGGGCCTGTCGTGGAGGTGGA 570
||||||||||| ||| | |||| | || | ||||| | || ||||||||||||||
Sbjct 415 ATAGGTAATAT-ATTCAAACCTCCGGTGCTGGGAAGTGT-GC-CC-GTCGTGGAGGTGGA 470
Query 571 TCTGGCACGGAGTAAAGCGGACACAAAAGATGGCCTTGGAACAAATCAAGGCCCTCAAAC 630
||| | |||||||||| ||||||||| ||||||||||||||||| | ||||| | |||
Sbjct 471 TCTCTCTCGGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAGCTAGGCCTTGGAAC 530
Query 631 AAAAGATGGCTCCAAAGTCTCTG-TTC 656
|||||| |||||||||||||||| |||
Sbjct 531 AAAAGAAGGCTCCAAAGTCTCTGCTTC 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5