BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29470.1 Length=931 Score E Sequences producing significant alignments: (Bits) Value Ahg491810 jgi|Araly1|491810|fgenesh2_kg.7__1243__AT4G29470.1 1175 0.0 Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1 566 1e-160 > Ahg491810 jgi|Araly1|491810|fgenesh2_kg.7__1243__AT4G29470.1 Length=867 Score = 1175 bits (636), Expect = 0.0 Identities = 765/827 (93%), Gaps = 10/827 (1%) Strand=Plus/Plus Query 1 AGAATGGGACCTTCCATTCCAAAGAGACACAATTATAATTCTTGGGGTCAGAATTTGAAA 60 ||||||||||||||||||||||| |||| |||||||| || || ||||||||||||||| Sbjct 1 AGAATGGGACCTTCCATTCCAAAAAGACTCAATTATACTT-TT-TGGTCAGAATTTGAAA 58 Query 61 GAACAAAACAACAAACTTCTACTGGAGAAGGTAAGATAGAAACATGATCCGCGGTGGTGC 120 ||||||||||| ||||||| ||| |||||||| ||||| ||| ||||| |||||||||| Sbjct 59 GAACAAAACAAGAAACTTCCACTAGAGAAGGTGAGATACAAAGATGATTTGCGGTGGTGC 118 Query 121 TTTGACACATGTTGCTTTAGGCTTAACCGTCTTCCTCCTCCTT-GCCGTCGTTCACAGCC 179 ||||||||||||||||||||| ||||||| ||||||||| ||| ||||| |||||||||| Sbjct 119 TTTGACACATGTTGCTTTAGGTTTAACCGCCTTCCTCCT-CTTCGCCGTTGTTCACAGCC 177 Query 180 AGGAAAAGTGCAGCAAAACCTGCATTGCACAGAAATGCAATGTTCTCGGTATTCGCTATG 239 |||| |||||||||| ||||||||||||||||||||||||||||||| | |||| |||| Sbjct 178 AGGAGAAGTGCAGCAGAACCTGCATTGCACAGAAATGCAATGTTCTCAGCGTTCGATATG 237 Query 240 GGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGGAGAGCCACCTTGTGATGATCTTG 299 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 238 GGAAGTATTGTGGGATAGGTTACTTTGGATGTCCGGGAGAGCCACCTTGTGATGATCTTG 297 Query 300 ATGA-TTGTTGTATG-ACTCATGATAATTGTGTTGATTTAAAAGGTATGACTTATGTTGA 357 || | |||||||||| || ||||| |||||||||| | |||||||||||||||||||| | Sbjct 298 AT-ACTTGTTGTATGAAC-CATGACAATTGTGTTGGTGTAAAAGGTATGACTTATGTTAA 355 Query 358 CTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTTAAACAATCAATCCAAGAATCTAA 417 |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 356 CTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTAAAAAAATCAATCCAACAATCTAA 415 Query 418 CAACCAAAAGGTTGGATTTTCCAAGGAATGCCCTTATTCAACAGTGATACCAACCGTGTA 477 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 416 CAACCAAAAGGTTGGATTTTCCAAGCAATGCCCTTATTCAACAGTGATACCAACCGTGTA 475 Query 478 CAGAGGAATGAATTATGGCATTTTCTTCAGTGGGATAGGTAATATCATTATACCTAAGAA 537 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 476 CAGAGGAATGAATTACGGCATTTTCTTCAGTGGGATAGGTAATATCATTAAACCTAAGAA 535 Query 538 GCCAGCAAGTGCCGGGCCTGTCGTGGAGGTGGATCTGGCACGGAGTAAAGCGGACACAAA 597 ||||||||| |||| ||| || |||||||||||||| || ||||||||||| |||||||| Sbjct 536 GCCAGCAAGCGCCGCGCCCGTAGTGGAGGTGGATCTAGCTCGGAGTAAAGCAGACACAAA 595 Query 598 AGATGGCCTTGGAACAAATCAAGGCCCTCAAACAAAAGATGGCTCCAAAGTCTCTGTTCC 657 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 596 AGATGGCCTTGGAAAAAATCAAGGACCTCAAACAAAAGATGGCTCCAAAGTCTCTGTTTT 655 Query 658 GATGAACCCTTCTCCTTCTTGATCATTAGGTGACTCATAACTCTCAAGTTTTGTAGATTA 717 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GATGAACCCTTCTCCTTCTTGATCATTAGGTGACTCATAACTCTCAAGTTTTGTAGATTC 715 Query 718 TTTAACTTTGTTGTCTT-ATGAAAAATGATCAAGATCTTGAATTCTCTCAGGTTCATGA- 775 |||||||||||| | || |||||||||||||||||||||||||||| ||||||||||| Sbjct 716 TTTAACTTTGTTTTTTTCATGAAAAATGATCAAGATCTTGAATTCTGTCAGGTTCATGGC 775 Query 776 TTCCCATGTATTTTATACATTACATTAGTTTCTCTTTTACTCTAGAT 822 |||||||||||| |||||||||| ||||||||| || |||||||||| Sbjct 776 TTCCCATGTATTATATACATTACTTTAGTTTCTATTGTACTCTAGAT 822 > Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1 Length=647 Score = 566 bits (306), Expect = 1e-160 Identities = 483/567 (85%), Gaps = 18/567 (3%) Strand=Plus/Plus Query 98 AGAAACATGATCCGCGGTGGTGCTTTGACACATGTTGCTTTAGGCTTAACCGTCTTCCTC 157 ||||| ||||||| ||| | ||||||||||| ||||||||| || ||||||| ||||||| Sbjct 1 AGAAAGATGATCCCCGGCGTTGCTTTGACACGTGTTGCTTTCGGGTTAACCGCCTTCCTC 60 Query 158 CTCCTTGCCGTCGTTCA-CAGCCAGGAAAAGTGCAGCAAAACCTGCATTGCACAGAAA-T 215 ||||| |||| || | | ||||||||| ||||||||||| |||||||||||||| ||| | Sbjct 61 CTCCTCGCCGCCG-TGAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACA-AAACT 118 Query 216 GCAA-TGTTCTCGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCT 274 |||| | ||| || |||| |||||||||||| ||||||||||||||||||||||||| Sbjct 119 GCAACAG-TCTTGGCATTCACTATGGGAAGTACTGTGGGATAGGTTACTTTGGATGTCGA 177 Query 275 GGAGAGCCACCTTGTGATGATCTTGATGATTGTTGTATGACTCATGATAATTGTGTTGAT 334 ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 178 GGAGAACCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGAT 237 Query 335 TTAAAAGGTATGACTTATGTTGACTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTT 394 ||||||||||||||||| ||| ||||||||||||||||| | |||||||||||| |||| Sbjct 238 TTAAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTA 297 Query 395 A-AACAATCAATCCAA-GAATCTAACAACCAAAAGGTTGGATTTTCCAAGGAATGCCCTT 452 | || |||| || || || |||||| |||||| ||||||| |||| ||||||||| Sbjct 298 AGAA-AATCGATTAAACGA-TCTAACGGTCAAAAGATTGGATTCTCCACTCAATGCCCTT 355 Query 453 ATTCAACAGTGATACCAACCGTGTACAGA-GGAATGAATTATGGCATTTTCTTCAGTGGG 511 |||| | ||||||||||||||||| || | |||||| |||| |||||||||||||||||| Sbjct 356 ATTCGATAGTGATACCAACCGTGTTCA-ATGGAATGGATTACGGCATTTTCTTCAGTGGG 414 Query 512 ATAGGTAATATCATT-ATACCTAAGAAGCCAGCAAGTGCCGGGCCTGTCGTGGAGGTGGA 570 ||||||||||| ||| | |||| | || | ||||| | || |||||||||||||| Sbjct 415 ATAGGTAATAT-ATTCAAACCTCCGGTGCTGGGAAGTGT-GC-CC-GTCGTGGAGGTGGA 470 Query 571 TCTGGCACGGAGTAAAGCGGACACAAAAGATGGCCTTGGAACAAATCAAGGCCCTCAAAC 630 ||| | |||||||||| ||||||||| ||||||||||||||||| | ||||| | ||| Sbjct 471 TCTCTCTCGGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAGCTAGGCCTTGGAAC 530 Query 631 AAAAGATGGCTCCAAAGTCTCTG-TTC 656 |||||| |||||||||||||||| ||| Sbjct 531 AAAAGAAGGCTCCAAAGTCTCTGCTTC 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34539362802 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5