BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29480.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491809 jgi|Araly1|491809|fgenesh2_kg.7__1242__AT4G29480.1 887 0.0
Ahg480503 jgi|Araly1|480503|fgenesh2_kg.3__3204__AT2G19680.1 385 3e-106
Ahg354168 jgi|Araly1|354168|fgenesh1_pg.C_scaffold_7001341 272 2e-72
> Ahg491809 jgi|Araly1|491809|fgenesh2_kg.7__1242__AT4G29480.1
Length=679
Score = 887 bits (480), Expect = 0.0
Identities = 548/579 (95%), Gaps = 12/579 (2%)
Strand=Plus/Plus
Query 8 TAACATAAAGAAGAGAA--G---TA-TTACGCAGTTGTTGTTGAACCAGTGGCCCGAAAT 61
||||||||||||||||| | || ||||||| ||||||||| ||||||||||||||
Sbjct 3 TAACATAAAGAAGAGAAGTGACATATTTACGCA---GTTGTTGAATCAGTGGCCCGAAAT 59
Query 62 CTCGAATCGACTCATCTCTCAGCTCACCGGTGCTGCATTATCAAAACTGCAGGAAGGATT 121
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 60 CTCGAATCGACTCATCTCTCAGCTCACCGGCGCTGCATTATC--AATTGCAGGAAGGATT 117
Query 122 TGGTTGTGAAGATGGCATCGAAGTTGATACAAGTTCAATCAAAGGCATGTGAGGCTTCAA 181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 118 TGGTTGTGAAGATGGCATCGAAGTTGATACAAGTTCAGTCAAAGGCATGTGAGGCTTCAA 177
Query 182 AGTTTGTGGCTAAGCATGGAACTTCCTACTACAGACAGCTGTTGGAGAAGAACAAGCAGT 241
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 178 AGTTTGTGGCTAAGCATGGAACTTCCTACTACAGACAATTGCTGGAGAAGAACAAGCAAT 237
Query 242 ATATCCAGGAACCTGCCACTGTTGAGAAGTGCCAAGAGTTGTCTAAGCAGTTGCTCTACA 301
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 238 ATATCCAGGAACCTGCCACTGTTGAGAAGTGTCAAGAGTTGTCTAAGCAATTGCTCTACA 297
Query 302 CCCGTCTTGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGACTACGCAA 361
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 CCCGTCTTGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAATAGACTACGCAA 357
Query 362 AGAACCTATGGAAGAACAGATCCGGTCTGAAGGTAGAAGATGCAGGAATCGCTGCATTGT 421
||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 358 AGAACTTATGGAAGAACAGATCCGCTCTGAAGGTAGAAGATGCGGGAATCGCTGCATTGT 417
Query 422 TTGGTCTCGAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCT 481
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 TTGGTCTTGAATGCTTTGCGTGGTATTGCGCGGGTGAAATCGCCGGCAGAGGATTCACCT 477
Query 482 TCACAGGCTATTACCCATGAAGGAGAGTAACAATAACTTGAAGATTGTGTAATCCCCTCC 541
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 TCACAGGCTATTACCCTTGAAGGAGAGAAACAATAACTTGAAGATTGTGTAATCCCCTCC 537
Query 542 GTTTTTAGTTTTCATGATTCTCTCTTGAATCAAtttttt 580
||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GTTTT-AGTTTTCATGATTCTCTCTTGAATCAATTTTTT 575
Score = 182 bits (98), Expect = 4e-45
Identities = 102/104 (98%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 620 AAAATCCATTTTGCTATAACTCTTTGATAAAGGTTGCTCTCAATAAGAACAAAATTTCCC 679
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 576 AAAATCCATTTTGCTATAACTCTTTGATAAAGATTGCTCTCAATAAGAACAAAATTTCCC 635
Query 680 AGGAAATTGCTTTCACTATAATGTTTTTGTCCTTGTTTAATATC 723
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 636 AGGAAATTGCTTTCACTATAATGTTTTTGGCCTTGTTTAATATC 679
> Ahg480503 jgi|Araly1|480503|fgenesh2_kg.3__3204__AT2G19680.1
Length=599
Score = 385 bits (208), Expect = 3e-106
Identities = 322/376 (86%), Gaps = 12/376 (3%)
Strand=Plus/Plus
Query 133 ATGGCATCGAAGTTGATACAAGTTCAATCAAAGGCATGTGAGGCTTCAAAGTTTGTGGCT 192
|||||||| || ||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 25 ATGGCATCAAAATTGGTACAACTTCAATCAAAGGCATGTCAGGCTTCAAAGTTTGTGGCC 84
Query 193 AAGCAT-GGAACTTCCTACTA-CAGACAGCTGTTGGAGAAGAACAAGCAGTAT-ATCCAG 249
|||||| |||| ||| ||||| || || |||||||| |||||||||| | | | ||
Sbjct 85 AAGCATGGGAA-TTCTTACTATAAG-CAATTGTTGGAGCAGAACAAGCAAT-TCGTTCAA 141
Query 250 GAACCTGCCACTGTTGAGAAGTGCCA-AGAGTTGTCTAAGCAGTTGCTCTACACCCGTCT 308
|| ||||| ||||| |||||||| || || ||||||||||| ||||||||||| |||||
Sbjct 142 GAGCCTGCAACTGTAGAGAAGTG-CAGTGAATTGTCTAAGCAATTGCTCTACACTCGTCT 200
Query 309 TGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGACTACGCAAAGAACCT 368
||||||||||||||| || |||||||| || ||||| ||||||||||| ||||||||| |
Sbjct 201 TGCTAGCATTCCCGGGCGTTATGAAACATTTTGGAAAGAAGTAGACTATGCAAAGAACTT 260
Query 369 ATGGAAGAACAGATCCG-GTCTGAAGGTAGAAGATGCAGGAATCGCTGCATTGTTTGGTC 427
|| |||||||||| || ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 261 ATTGAAGAACAGA-GCGAATCTGAAGGTGGAAGATGCAGGAATCGCTGCATTGTTTGG-C 318
Query 428 TC-GAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCTTCACA 486
| ||||||||||| |||| ||||||||||||||||| ||||||||| ||||| |||||
Sbjct 319 TTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGAGGTTTCACTTTCACC 378
Query 487 GGCTATTACCCATGAA 502
||||| ||||| ||||
Sbjct 379 GGCTACTACCCTTGAA 394
> Ahg354168 jgi|Araly1|354168|fgenesh1_pg.C_scaffold_7001341
Length=369
Score = 272 bits (147), Expect = 2e-72
Identities = 302/376 (80%), Gaps = 14/376 (4%)
Strand=Plus/Plus
Query 133 ATGGCATCGAAGTTGATACAAGTT-CAATCAAAGGCATGTGAGGCTTCAAAGTTTGTGGC 191
||||||||||||||| ||||| || |||| ||||| ||||| || || ||||||||| |
Sbjct 1 ATGGCATCGAAGTTGCTACAA-TTGAAATCCAAGGCCTGTGAAGCATCGAAGTTTGTGTC 59
Query 192 TAAGCATGGAACTTCCTACTACAGACAGCTGTTGGAGAAGAACAAGCAGTATATCCAGGA 251
||||| || || | ||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 60 GAAGCACGGCACAACTTACTACAAACAGTTGCTGGAGAAGAACAAGCAGTATATCCAGGA 119
Query 252 ACCTGCCACTGTTGAGAAGTGCCAA-GAGTTGTCTAAGCAG-TTGCTCTACACCCGTCTT 309
|| |||||||| ||||| ||| || ||||||||||||||| || || ||||| ||||||
Sbjct 120 GCCAGCCACTGTAGAGAAATGC-AATGAGTTGTCTAAGCAGCTT-CTTTACACTCGTCTT 177
Query 310 GCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGA-CTACGCAAAGAACCT 368
|| |||||||| || || ||||| | || ||||||||||| || | ||| ||| | |
Sbjct 178 GCGAGCATTCCTGGGCGTTATGAGTCATTTTGGAAGGAAGTCGATC-ACGTGAAGGGCTT 236
Query 369 ATGGAAGAA-CAGATCCGG-TCTGAAGGTAGAAGATGCAGGAATCGCTGCA-TTGTTTGG 425
||||||||| | | | || | ||||||| |||||||| ||||| |||||| || |||||
Sbjct 237 ATGGAAGAATCGGG-C-GGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTT-TTTGG 293
Query 426 TCTCGAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCTTCAC 485
| | ||||||||||| ||||| || || || || |||| || || || ||||| |||||
Sbjct 294 TTTAGAATGCTTTGCTTGGTACTGTGCTGGAGAGATCGTAGGAAGGGGCTTCACTTTCAC 353
Query 486 AGGCTATTACCCATGA 501
||||| ||||| |||
Sbjct 354 CGGCTACTACCCTTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5