BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29510.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491807 jgi|Araly1|491807|fgenesh2_kg.7__1240__AT4G29510.1 2283 0.0
Ahg343233 jgi|Araly1|343233|fgenesh1_pg.C_scaffold_3002996 1024 0.0
> Ahg491807 jgi|Araly1|491807|fgenesh2_kg.7__1240__AT4G29510.1
Length=1533
Score = 2283 bits (1236), Expect = 0.0
Identities = 1450/1548 (94%), Gaps = 36/1548 (2%)
Strand=Plus/Plus
Query 10 AAATTAAAAGCTTCGTGTCTTCATAAAACCCTAATCTCGCGACTTCGTCTCTATCCCCAA 69
|||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1 AAATAAAAAGCTTCGCGTCTTCCTAAAACCCTAATCTTGCGACTTCGTCTCTATCCCC-A 59
Query 70 AAACCCTTTCCTCTCTTCCTTCTTGTGTGAGACCGAG-aaaaaaaGATGACTAAGAACAG 128
||| ||| ||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 60 AAA-----TCC-CTCTT-GTTC------GAGACCGAGAAAAAAAAGATGACTAAGAACAG 106
Query 129 TAACCACGACGAGAATGAGTTCATCAGCTTTGAACCAAATCAGAACACGAAGATACGCTT 188
|||| || ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 107 TAACGACAACGAGCATGAGTTCATCAGCTTTGAACCTAATCAGAACACGAAGATACGCTT 166
Query 189 TGAAGATGCTGATGAAGACGAAGTTGCTGAAGGGTCTGGTGTTGCCGGCGAGGAAACTCC 248
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 167 TGAAGATGCTGATGAAGACGAAGTTGCTGAAGGGTCTGGTGTTGCCGGTGAGGAAGCTGC 226
Query 249 CCAAGATGAGTCCATGTTCGACGCCGGAGAGAGCGCCGACACCGCTGAAGTAACTGATGA 308
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 227 CCAAGATGAATCCATGTTCGACGCCGGAGAGAGCGCCGACACCGCTGATGTCACTGATGA 286
Query 309 TACCACCAGTGCCGATTACTACTTCGATTCTTACTCTCACTTTGGAATCCATGAAGAGAT 368
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 287 TACCACCAGCGCCGATTACTACTTCGATTCTTACTCTCACTTCGGAATCCATGAAGAGAT 346
Query 369 GTTGAAGGATGTTGTGAGAACAAAGACTTATCAGAATGTTATTTATCAGAACAAGTTTCT 428
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 347 GTTAAAGGATGTAGTGAGAACGAAGACTTATCAGAATGTTATTTATCAGAACAAGTTTCT 406
Query 429 TATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACCGGAATTTTGTCTCTGTTCTG 488
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 407 TATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACTGGTATTTTGTCTCTGTTCTG 466
Query 489 TGCCAAGGCAGGAGCTGCTCATGTCTACGCTGTTGAGTGTTCTCAAATGGCTGACATGGC 548
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 467 TGCCAAGGCAGGAGCAGCTCATGTCTACGCTGTTGAATGTTCGCAAATGGCTGACATGGC 526
Query 549 AAAGGAGATTGTTAAAGCTAATGGATTTTCTGATGTTATTACGGTATTGAAAGGGAAGAT 608
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 527 AAAGGAGATTGTTAAAGCCAATGGATTTTCTGATGTTATTACGGTTTTGAAAGGGAAGAT 586
Query 609 TGAGGAGATAGAGCTTCCCACTCCTAAAGTGGATGTGATTATATCGGAATGGATGGGTTA 668
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 587 TGAGGAGATAGAGCTTCCCACTCCTAAAGTGGATGTGATTATATCTGAATGGATGGGTTA 646
Query 669 CTTTTTGTTGTTTGAAAATATGTTGGACAGTGTCTTGTATGCTCGTGATAAATGGCTTGT 728
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 647 CTTTTTGTTGTTTGAAAATATGTTGGATAGTGTCTTATACGCTCGTGATAAATGGCTTGT 706
Query 729 TGAAGGTGGAGTTGTGCTACCAGACAAAGCCTCTCTGCATCTTACAGCCATAGAGGATTC 788
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 707 TGATGGTGGAGTTGTGCTTCCAGACAAAGCCTCCCTGCATCTTACAGCCATAGAGGATTC 766
Query 789 AGAGTACAAAGAAGACAAAATCGAATTTTGGAACAGTGTGTATGGTTTTGACATGTCATG 848
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 767 GGAGTACAAAGAAGACAAAATAGAATTTTGGAACAGTGTGTATGGTTTTGACATGTCATG 826
Query 849 TATTAAGAAAAAAGCTATGATGGAACCACTTGTTGACACAGTCGACCAAAACCAAATCGT 908
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TATCAAGAAAAAAGCTATGATGGAACCACTTGTTGACACAGTCGACCAAAACCAAATCGT 886
Query 909 CACCGATAGTAGGCTTCTAAAGACGATGGATATCTCAAAGATGTCCTCTGGTGATGCTTC 968
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 887 TACCGATAGTAGGCTTCTAAAGACCATGGACATCTCAAAGATGTCTTCTGGTGATGCTTC 946
Query 969 CTTCACAGCTCCCTTTAAGCTTGTTGCACAACGCAATGACTACATCCACGCCCTTGTAGC 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CTTCACAGCTCCCTTTAAGCTTGTTGCACAACGCAATGACTACATCCACGCCCTTGTAGC 1006
Query 1029 CTACTTTGATGTATCGTTTACCATGTGCCACAAGCTGCTGGGCTTCTCAACAGGACCGAA 1088
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1007 CTACTTTGATGTATCGTTTACCATGTGCCACAAGCTGCTGGGTTTCTCAACAGGACCGAA 1066
Query 1089 ATCCCGAGCTACACACTGGAAACAAACAGTTCTGTATCTAGAAGATGTGTTAACCATATG 1148
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1067 ATCCCGAGCTACACACTGGAAGCAAACAGTTCTGTACCTAGAAGATGTGTTAACCATATG 1126
Query 1149 TGAGGGTGAGACAATCACTGGAACTATGTCCGTTTCTCCTAACAAGAAGAATCCTCGAGA 1208
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1127 TGAGGGTGAGACAATCACTGGAACCATGTCTGTTTCTCCTAACAAGAAGAATCCACGAGA 1186
Query 1209 CATTGACATAAAGCTAAGCTATTCTTTGAATGGCCAGCATTGCAAGATCTCAAGGACCCA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CATTGACATAAAGCTAAGCTATTCTTTGAATGGCCAGCATTGCAAGATCTCAAGGACCCA 1246
Query 1269 ACACTACAAAATGCGTTAAAGTTCTCTCATAAGAAGCAGAACTTCAGAAGATACAATTCT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 ACACTACAAAATGCGTTAAAGTTCTCTCATAAGAAGCAGAACTTCAGAAGATACAATTCT 1306
Query 1329 CATATTGTGATTTAGTTTTTATATTTCTTTTTCT-CCAGATTAC-AACTTTCCATTTGCT 1386
|| |||||||||||| |||| ||||||||||| | ||||||| | || ||||||||||||
Sbjct 1307 CAAATTGTGATTTAGATTTTGTATTTCTTTTTTTTCCAGATTTCCAAATTTCCATTTGCT 1366
Query 1387 TCACATTGCAACATTTGCTT--------CATCTCAAGTTAAATTAATGATTTTGCTCTAA 1438
||||||||||||||||| || | ||||||| ||||||||||||||||||||||
Sbjct 1367 TCACATTGCAACATTTGTTTTTGTTTTTCTTCTCAAGCTAAATTAATGATTTTGCTCTAA 1426
Query 1439 ACCATCTCGTGTATGTTCCTTGTTG-ATCACAAAACTGATGTCTGTCAA--CAC-----T 1490
||||||||||||||||||||| ||| |||||| ||||||||||| |||| | | |
Sbjct 1427 ACCATCTCGTGTATGTTCCTTCTTGTATCACAGAACTGATGTCTCTCAAGTCTCAAAAAT 1486
Query 1491 --TTTCAATATTCTCTCCAAAAGATTATAGAAACTAAAGGAAATCTAC 1536
||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1487 ACTTTCAATATTCTCTCCAAA-GATTATAGAAACTAAACGAACTCTAC 1533
> Ahg343233 jgi|Araly1|343233|fgenesh1_pg.C_scaffold_3002996
Length=1101
Score = 1024 bits (554), Expect = 0.0
Identities = 850/994 (86%), Gaps = 16/994 (2%)
Strand=Plus/Plus
Query 302 CTGATGATACCACCAGTGCCGATTACTACTTCGATTCTTACTCTCACTTTGGAATCCATG 361
||||||| | ||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 116 CTGATGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCTCATTTTGGTATTCATG 175
Query 362 AAGAGATGTTGAAGGATGTTGTGAGAACAAAGACTTATCA-GAATGTTATTTATCA-GAA 419
|||| ||||| || ||||| ||||| |||||| |||||| || ||||||||| || |||
Sbjct 176 AAGAAATGTTAAAAGATGTAGTGAGGACAAAGTGTTATCAAGA-TGTTATTTA-CAAGAA 233
Query 420 CAAGTTTCTTATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACCGGAATTTTGTC 479
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 234 CAAGTTTCTTATCAAAGACAAGATTGTTCTTGATGTTGGAGCTGGAACTGGAATCTTGTC 293
Query 480 TCTGTTCTGTGCCAAGGCAGGAGCTGCTCATGTCTACGCTGTTGAGTGTTCTCAAATGGC 539
| |||| ||||| || |||||||| ||||| || ||||| || || ||||||||||||||
Sbjct 294 TTTGTTTTGTGCTAAAGCAGGAGCAGCTCACGTTTACGCAGTGGAATGTTCTCAAATGGC 353
Query 540 TGACATGGCAA-AGGAGATTGTTAAAG-CTAATGGATTTTCTGATGTTATTACGGTATTG 597
||||| |||| || |||||||||| | | ||||||||||| |||||||| ||||| |||
Sbjct 354 TGACACCGCAAGAG-AGATTGTTAA-GTCAAATGGATTTTCGGATGTTATAACGGTTTTG 411
Query 598 AAAGGGAAGATTGAGGAGATAGAGCTTCCCACTCCTAAAGTGGATGTGATTATATCGGAA 657
||||||||||||||||| || |||||||| | ||||||||||||||||||||| || |||
Sbjct 412 AAAGGGAAGATTGAGGAAATCGAGCTTCCGATTCCTAAAGTGGATGTGATTATCTCTGAA 471
Query 658 TGGATGGGTTACTTTTTGTTGTTTGAAAATATG-TTGGACAGTGTCTTGTATGCTCGTGA 716
|||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||| |
Sbjct 472 TGGATGGGTTACTTTTTGTTGTATGAAAATATGCTTG-ACACCGTCTTGTATGCTCGCAA 530
Query 717 TAAATGGCTTGTTGAAGGTGGAGTTGTGCTACCAGACAAAGCCTCTCTGCATCTTACAGC 776
||||||||||||||| |||||| ||| |||| || ||||| ||| || ||||||||||
Sbjct 531 TAAATGGCTTGTTGATGGTGGAACTGTTTTACCGGATAAAGCTTCTTTGTATCTTACAGC 590
Query 777 CATAGAGGATTCAGAGTACAAAGAAGACAAAATCGAATTTTGGAAC-AGTGTGTATGGTT 835
|||||||||| | | || ||||| |||||| | || |||||| || | |||||||| |
Sbjct 591 CATAGAGGATGCTCATTATAAAGACGACAAAGTAGAGTTTTGGGACGAC-GTGTATGGGT 649
Query 836 TTGACATGTCATGTATTAAGAAAAAAGCTATGATGGAACCACTTGTTGACACAGTCGACC 895
|||||||||| || || |||| |||||| || | |||||| ||||||||||| || |||
Sbjct 650 TTGACATGTCGTGCATCAAGAGAAAAGCGATTACGGAACCGCTTGTTGACACTGTGGACG 709
Query 896 AAAACCAAATCGTCACCGATAGTAGGCTTCTAAAGACGATGGATATCTCAAAGATGTCCT 955
|||||||||||| || ||||| | ||| || ||||| ||||||||||| |||||| | |
Sbjct 710 GAAACCAAATCGTGACTGATAGCAAGCTGCTGAAGACAATGGATATCTCTAAGATGGCTT 769
Query 956 CTGGTGATGCTTCCTTCACAGCTCCCTTTAAGCTTGTTGCACAACGCAATGACTACATCC 1015
|||| |||||||||||||||||||| ||||||||||| |||||||| |||||| | ||||
Sbjct 770 CTGGAGATGCTTCCTTCACAGCTCCATTTAAGCTTGTCGCACAACGAAATGACCATATCC 829
Query 1016 ACGCCCTTGTAGCCTACTTTGATGTATCGTTTACCATGTGCCACAAGCTGCTGGGCTTCT 1075
| |||||||||||||||||||||||||| || ||||||||||||||| | |||| ||||
Sbjct 830 ATGCCCTTGTAGCCTACTTTGATGTATCATTCACCATGTGCCACAAGAAGATGGGTTTCT 889
Query 1076 CAACAGGACCGAAATCCCGAGCTACACACTGGAAACAAACAGTTCTGTATCTAGAAGATG 1135
|||||||||| ||||| || || |||||||||||||||||||| ||||| || |||||||
Sbjct 890 CAACAGGACCAAAATCTCGGGCGACACACTGGAAACAAACAGTGCTGTACCTGGAAGATG 949
Query 1136 TGTTAACCATATGTGAGGGTGAGACAATCACTGGAA-CTATGTCCGTTTCTCCTAACAAG 1194
|||| |||||||| |||||||| |||||||| |||| | ||| || | || | |||||
Sbjct 950 TGTTGACCATATGCGAGGGTGAAACAATCACAGGAAGC-ATGACCATATCACAAAACAAA 1008
Query 1195 AAGAATCCTC-GAGACATTGACATAAAGCTAAGCTATTCTTTGAATGGCCAGCATTGCAA 1253
|||||||| | ||||| | ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1009 AAGAATCC-CAGAGACGTCGACATAAAGCTCAGCTATTCTTTGAACGGCCAACATTGCAA 1067
Query 1254 GATCTCAAGGACCCAACACTACAAAATGCGTTAA 1287
|||||||||||| |||| |||||||||||| |||
Sbjct 1068 GATCTCAAGGACGCAACTCTACAAAATGCGCTAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5