BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29520.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491806 jgi|Araly1|491806|fgenesh2_kg.7__1239__AT4G29520.1 1676 0.0
> Ahg491806 jgi|Araly1|491806|fgenesh2_kg.7__1239__AT4G29520.1
Length=1118
Score = 1676 bits (907), Expect = 0.0
Identities = 998/1041 (96%), Gaps = 9/1041 (1%)
Strand=Plus/Plus
Query 76 GCTTCTGACTTCAATGGTTGTGATGAATCGAGTTCTGGTAGCTCTTACATTAGCTCTGCT 135
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 44 GCTTCTGACTTCAATGGTTGTGATGAATCGAGTTCTGATAGCTCTTACATTAGCTCTTCT 103
Query 136 AGCTTCGTCGGCGTTATTACCTGTTTCCGATGCCGCGAAGAAACCTTCTTCGACGCCGAG 195
||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||
Sbjct 104 AGCTTCGTCGGCGTTATTACCGGTTTCCGATGGTGCGAAGAAACCGTCTTCGGCGCCGAG 163
Query 196 AAAGGAGGATGTTCCGTATATAAAGTGTCAGGTTTGCGAGAAACTATCTTCTCGGTTACA 255
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 164 AAAGGAGGATGTTCCGTATATAAAGTGTCAGGTTTGCGAGAAACTAGCCTCTCGGTTACA 223
Query 256 CCAGCTAGTGAAGGAGAAGCAACAACAGATCTCTCCCAAAAAGATCTCGGAGTATGAGAT 315
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 224 CCAGCTAGTGAAGGAGAAGCAACAACAGATCTCTCCCAAGAAGATCTCGGAGTATGAGAT 283
Query 316 CATTGAGATTGCTGAAAATGTCTGCAATTTGAAGAAAGAGGAAGCTGATTGGATGCTTAA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 284 CATTGAGATTGCTGAAAATGTCTGCAATTTGAAGAAAGAGGAAGCTGATTGGATGCTAAA 343
Query 376 GATTGACATTGTTGAGAAAGGCGATAATCTTGTGCTGGTTGAGCAA-CAAGAAGAAGGGA 434
||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 344 GATTGACATTGTTGAAAAAGGCGATAAGCTTGTGCTGGTTGAGCAAGC-AGAAGAAGGGA 402
Query 435 TGTGTAATTCCAAGTGCAAGACGATCGAGAATGCTTGTCAAAAGGTCATTGGTTACTCAG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TGTGTAATTCCAAGTGCAAGACGATCGAGAATGCTTGTCAAAAGGTCATTGGTTACTCAG 462
Query 495 ACACTGATGTTGCAGAGTATATTTACAAGTCTAAGCCTGATCTTGTTTCACTGGTGAATC 554
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 463 ACACTGATGTTTCAGAGTATATTTACAAGTCTAAGCCTGATCTTGTTTCCCTGGTGAATC 522
Query 555 ATCTATGCAAAGATTTGACCGATGCTTGCAGCAAGAAACCTCCTCCTGTTCCCAAGGATC 614
|||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 523 ATCTATGCAATGACCTGACCGATGCTTGTAGCAAGAAACCTCCTCCTGTTCCTAAGGATC 582
Query 615 GGGTTCCTGGAGAACCATTTGTTGCAAAACCATCAAAAGATGCTGAAATGGACAAGATTT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GGGTTCCTGGAGAACCATTTGTTGCAAAACCATCAAAAGATGCTGAAATGGACAAGATTT 642
Query 675 TGAGATCTATGCAGGGTATGCCAGGAGCACCTGGCATGAAGGTATACTCTAGAGAAGATA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TGAGATCTATGCAGGGTATGCCAGGAGCACCTGGCATGAAGGTATACTCTAGAGAAGATA 702
Query 735 TAGAGAAGGGGAATATCGGTAatgaagatgatgatggcgacgatgatgaagatgaggaag 794
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 703 TAGAGAAGGGGAATATCGGTAATGAAGATGACGATGGCGACGATGATGAAGATGAGGAAG 762
Query 795 aagatgatAAGTTTCCCAAGAACTTGGGAAAAGTTTTgaaagagaaagagagtaaaacag 854
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 763 AAGATGAAAAGTTTCCCAAGAACTTGGGAAAAGTTTTGAAAGAGAAAGAGAGTAAAACGG 822
Query 855 aagaattgaagaagacaatcactaaggagttcaagaagaaagGTGAGGCTCTGAAGAGAC 914
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 823 AAGAATTGAAGAAGACAATCACTAAGGAGTTCAAGAAGAAAGGTGAGGTTTTGAAGAGAC 882
Query 915 ATGCACAGAAAGTGTCAAACCGGGTCCGGAGATGGTGGAAAGGACTTGGATCGTCTTCTT 974
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 883 ATGCACAGAAAGTGTCGAACCGGGTCCGGAGATGGTGGAAAGGACTTAGAACGTCTTCTT 942
Query 975 C---AAAGAAACCTAAATCCGGAAAGTCTGAGCTATAGAAACAGTTTTAAACTGGTTTTG 1031
| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 943 CTTCAAAGAAACCTAAGTCCGGGAAGTCTGAGCTATAGAAACAGTTTCAAACTGGTTTTG 1002
Query 1032 TTT-AATGTACT-CT-TTCTTCACACTTGCTTTTTGTAGATTTCCTTTAGTTTCTATAAT 1088
||| |||||||| || ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1003 TTTTAATGTACTACTCTTCTTCACACTGGCTTTTTGTAGATTTCGGTTAGTTTCTATAAT 1062
Query 1089 CTTTTGGAGAGAATATTGAAA 1109
|||| ||||||||||||||||
Sbjct 1063 CTTT-GGAGAGAATATTGAAA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5