BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29530.1
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491805 jgi|Araly1|491805|fgenesh2_kg.7__1238__AT4G29530.1 1194 0.0
> Ahg491805 jgi|Araly1|491805|fgenesh2_kg.7__1238__AT4G29530.1
Length=800
Score = 1194 bits (646), Expect = 0.0
Identities = 716/749 (96%), Gaps = 8/749 (1%)
Strand=Plus/Plus
Query 84 AAATGGCAAAAATCGTGA-TATTATTTGATTTCGATCGGACTTTGATCGACGGAGATAGT 142
|||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1 AAATGGCAAAGATCGTGATTA-TATTTGATTTCGATCGGACTTTAATCGACGGAGATAGT 59
Query 143 GACA-ATTGGGTTGTCACTGAAATGGGACTCACAGAGATCTTCCATCAGCTCCGTTTCAC 201
|||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 GACAGA-TGGGTGGTCACTGAAATGGGACTCACAGAGATTTTCCATCAGCTCCGTTTCAC 118
Query 202 TTTACCATGGAATCGTCTTATGGATAGGATGATGATGGAGCTACAATCACAAGGTAGATC 261
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 119 TTTACCATGGAATCGTCTTATGGATAGGATGATGATGGAGATACAGTCACAAGGTAGATC 178
Query 262 GATTGATGACATTAAATCTTGTTTGAAGAAAATGCCTATTGATTCTCATATTATTGAAGC 321
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 179 GATTGATGACATTGAATCTTGCTTGAAGAATATGCCTATTGATTCTCATATTATTGAAGC 238
Query 322 TATCAAATC-AGCTAAATCTTC-AGGATGTGATTTAAAGATTGTGAGTGATGCAAATCAG 379
||||||||| | | ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 239 TATCAAATCTA-CCAAATC-TCTAGGATGTGATTTAAAGATTGTGAGTGATGCAAATCAG 296
Query 380 TTTTTCATTGAGAAGATACTAGAGCACCATGATTTGGTGGATTGCTTTTCTGAGATTTAC 439
|||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 297 TTTTACATTGAGAAGATACTAGAGCAGCATGATTTGTTGGATTGCTTTTCTGAGATTTAC 356
Query 440 ACAAATCCAACCTCTCTTGATGATAATGGGAACTTGCGGATCTTGCCTTATCATAGTGAT 499
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 ACTAATCCAACCTCTCTTGATGAAAATGGGAACTTGCGGATCTTGCCTTATCATAGTGAT 416
Query 500 GCATTGCCTCCACATAGCTGCAATCTTTGCCCTTCAAATCTATGCAAGGGTTTAGTAATG 559
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 417 GCATTGCCTCCACATAGCTGCAATCTCTGCCCTTCAAATCTATGCAAGGGTCTAGTGATG 476
Query 560 GATCATTTACGTGCTTCTTCTTCCAATGATCAAATTCCAAGAAGGTTTATCTACCTTGGA 619
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATCATATACGTGCTTCTTCTTCCAATGATCAAATTCCAAGAAGGTTTATCTACCTTGGA 536
Query 620 GATGGAGGAGGTGACTTCTGCCCGACATTGAAGCTGAGAGAGTGTGATTTTGTGATGCCG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATGGAGGAGGTGACTTCTGCCCGACATTGAAGCTGAGAGAGTGTGATTTTGTGATGCCG 596
Query 680 AGAACGAATTATCCGCTATGGAAGAAGATCTCAGACAATCCCTTACTGATCAAAGCAGAA 739
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 597 AGAACGAATTATCCGCTATGGAAGAAGATTTCAGACAATGCCTTACTGATCAAAGCAGAA 656
Query 740 GTCAAGGAATGGAGTAGTGCAGAGGAACAACAGAGAATCCTGCTGCAACTTGTCAGCACA 799
|||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 657 GTCAAGGAATGGAGCAGTGCAGAGGAACTACAGAGAATCCTTCTGCAACTTGTCAGCACA 716
Query 800 ATAACAAAAGAAGAAGATTCATAACACAA 828
||||| |||||||||||||||||||||||
Sbjct 717 ATAACTAAAGAAGAAGATTCATAACACAA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5