BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29540.2
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491803 jgi|Araly1|491803|fgenesh2_kg.7__1236__AT4G29540.2 1888 0.0
> Ahg491803 jgi|Araly1|491803|fgenesh2_kg.7__1236__AT4G29540.2
Length=1201
Score = 1888 bits (1022), Expect = 0.0
Identities = 1145/1205 (95%), Gaps = 6/1205 (0%)
Strand=Plus/Plus
Query 1 ATGTATGCAATTGGAAGGGGTGTGGTTTTGGTCGACGTAGCCCGCC-ATGATTTCTCTCC 59
||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1 ATGTATGCAATTGAAAGGGGTTTGGTTTTGGTCTACGTAGCCCGCCAATGATTTCTCTCC 60
Query 60 TTAAAGCTCGCGAGAAGCTTCTCTCTCCTCTCGTCAGTTCCACTATCCGAAGACTCTCCT 119
|||||||||||||||||||||| ||||||||| ||||| || |||||| |||||||||||
Sbjct 61 TTAAAGCTCGCGAGAAGCTTCTTTCTCCTCTCTTCAGTACCTCTATCCAAAGACTCTCCT 120
Query 120 CTAGCCTCTCCTATTCTCGTGAAGATTCGAGGGATTCTGAAGTCTTAATACACCCGAGTG 179
|||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 121 CTAGTCTCTCTTATTCTCGTGAAGATTCAAGAGATTCTGAAGTCTTAATACACCCGAGTG 180
Query 180 CTGTCGTCCACCCAAATGCTGTGATTGGCAAGGGAGTTTCAGTTGGTCCATACTGTACTA 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 181 CTGTCGTCCACCCAAACGCTGTGATTGGCAAGGGAGTGTCAGTTGGTCCATTCTGTAC-A 239
Query 240 -TTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATGTCTTT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 GTTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATATCTTT 299
Query 299 GGAAACACAGAGTTGGGGGAATCTTGTGTTCTCATGACTGGTGCTGTTGTTGGCGATGAG 358
|||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 300 GGAAACACCGAGATGGGGGAATCTTGTGTACTGATGACTGGTGCTGTTGTTGGCGATGAG 359
Query 359 CTTCCTGGCTATACATTCATAGGATGCAATAACATTATCGGTCACCACGCCGTGGTTGGT 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CTTCCTGGCTATACATTCATAGGAAGCAATAACATTATCGGTCACCACGCCGTGGTTGGT 419
Query 419 GTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAAC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAAC 479
Query 479 AACAATGAAATCAGGGAGTTCTGCTCGATTCACAGGTCATCAAAGCCCAGTGATAAAACG 538
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 480 AACAATGAAATTAGGGAGTTCTGTTCGATTCACAGGTCATCAAAACCCAGTGATAAAACG 539
Query 539 GTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATT 599
Query 599 GGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCTGGCCATGTGGTTGTAGAAGAC 658
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 600 GGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCCGGCCATGTGGTTGTACAAGAC 659
Query 659 AATACACACACAGCAGGAGCCTCGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCT 718
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATACACACACAGCAGGAGCCACGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCT 719
Query 719 TTCATTGGCGGTGGTTCTGTGGTCTCACAAGATGTTCCAAAGTACATGATGGTGGCTGGA 778
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 720 TTCATTGGCGGTGGTTCTGTGGTTTCACAAGATGTTCCAAAGTACATGATGGTGACTGGA 779
Query 779 GAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATG 839
Query 839 TCAGAGATGAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTC 898
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAGAGCTAAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTC 899
Query 899 TCCTTAAGTTTTGAAGAGCGTCTCACGGAGCTGGAACAGGACCAAGAGCTGTACAGTGTT 958
|||| ||| ||||||||||||||| | || |||||||| |||||||| |||||||||||
Sbjct 900 CCCTTGAGTCTTGAAGAGCGTCTCATGAAGATGGAACAGAACCAAGAGTTGTACAGTGTT 959
Query 959 CCTGCAGTATCGGCAATGTTGCAGTCAATCCGAGATTCTTTCACTGAAAGTCGCCGTGGG 1018
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 960 CCTGCAGTATCGGCAATGTTGCAATCAATCCGAGATTCTTTCACAGAAAGTCGCCGTGGG 1019
Query 1019 ATATGCAAGTTCAGACAATGGCTCGATTCCACAACTTAGAGACTTAGCTTAGGCATTCAG 1078
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||
Sbjct 1020 ATATGCAAGTTCAGACAATGGCTGGATTCCACAGCTTAGAGACTTAGCTTACGCATCCAT 1079
Query 1079 TAATCAGCAATGGCTTATTATACCTAATTGCTCAATACCATTTCCTTCACTGGAACTGTA 1138
| |||||||||||| || |||||| |||||||| |||||||| ||||||||| |||||
Sbjct 1080 TGATCAGCAATGGC--AT-ATACCTTATTGCTCAGCACCATTTCTTTCACTGGATCTGTA 1136
Query 1139 ATAGTTTGATATATAGCTTTAACTAAGTGTTGTCAACATTCTGTGGGCACATAACATCCT 1198
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1137 ATAGTTTGATATATAGCTTTAACCAAGTGTTGTCAACATTTTGTGGGCACATAACATCCT 1196
Query 1199 TAAAA 1203
|||||
Sbjct 1197 TAAAA 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5