BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29550.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945056 jgi|Araly1|945056|scaffold_701285.1 743 0.0
> Ahg945056 jgi|Araly1|945056|scaffold_701285.1
Length=1057
Score = 743 bits (402), Expect = 0.0
Identities = 549/617 (89%), Gaps = 22/617 (4%)
Strand=Plus/Plus
Query 547 AGATTCTGTGCGCTTATGACTTACAACATTACTGCTGAGGCTGTTGATCCAGCCAACGA- 605
|||||||||||||||||||||||| | || |||||||||||||||||||| | ||||||
Sbjct 432 AGATTCTGTGCGCTTATGACTTACCATATAACTGCTGAGGCTGTTGATCCGGACAACGAC 491
Query 606 TTCACGTTTCACTTTCCAGACATGTGTTAC-CAGAGCTACATGTCAA-AAAGATGAAGAC 663
|| |||||||||||| ||||| |||||||| || |||||||||| || || |||||||||
Sbjct 492 TT-ACGTTTCACTTTTCAGACCTGTGTTACACA-AGCTACATGT-AAGAATGATGAAGAC 548
Query 664 CTGAGGATACTGACTGAAGTCTGTAGAATTAAACCAAAGATTCAAGGTACTGGAGACGAA 723
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 549 CTGAGGATACTGACTGAAGTTTGTAGAATAAAACCAAAGATTCAAGGTACTGGAGAC-AA 607
Query 724 A-TAAAGCGATGGAATGACGAAGCTATTGATGATATCTACAAAGGCAATCTACCTGAGTG 782
| |||||||||||||| |||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 608 ACCAAAGCGATGGAATGGCGAAGCTATTGATGATTTCTACAAAGGCGATCTACCTAAGTG 667
Query 783 GATTTCGGATGATACTTTGATGTCATGCAGTGAGCAAGATCACTTTTATAG-GGTGCAAG 841
||| ||||||||| |||||||| ||||||||||||||||||| |||||| | |||||| |
Sbjct 668 GATATCGGATGATGCTTTGATGCCATGCAGTGAGCAAGATCAGTTTTAT-GAGGTGCAGG 726
Query 842 AGTCAGACATCCGAGAACACAACTGGCTTCAA-CTATACACTGAGATTGCGTCT-TACTC 899
||||||| ||||||||||||||||||||| || ||||||||||| || |||| | |||||
Sbjct 727 AGTCAGAGATCCGAGAACACAACTGGCTT-AATCTATACACTGAAATCGCGT-TATACTC 784
Query 900 GCTGTGGGAAGGAGACATGAGGCTCA-AGTCTTGTGTGCCGCTGCAGATTAAGAATGTCC 958
||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||| |||
Sbjct 785 GCTCTGGGAAGGAGACATGAGGCT-AGAGTCTTGTGTGCCGGTGCAGATTATGAAGGTCA 843
Query 959 TTGTACGA-ACTCGTGAAGATTTTAAATCAAAGGAAAAGCTCAAGGCTGGGAATGCCATC 1017
||||| || |||||||||| | | | |||||||||||| | | |||||||||||| |||
Sbjct 844 TTGTA-GAGACTCGTGAAGCTGTGGAGTCAAAGGAAAAGTTGATGGCTGGGAATGCAATC 902
Query 1018 TTCTACATTAGTTTTAG-GGGTGTCAATACTCCTCATGGTCCACCTCAAGATCACAGAGC 1076
|||||||||||||| || | | ||| |||||||||||||||||||||||||||||||
Sbjct 903 TTCTACATTAGTTTCAGATACT-TGAATGCTCCTCATGGTCCACCTCAAGATCACAGAGC 961
Query 1077 CATTGTAAGAAGAACCGTCGATGGGATTCCAGGACATGTTTGTCTTGAGTTTAAGTGTTT 1136
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 962 CATTGTAAGAAGAACCGTTGATGGGATTCCAGGACATGTTTGTCTTGTGTTTAAGTGTTG 1021
Query 1137 GCTC-ATGGATCTGTGA 1152
|||| | ||||||||||
Sbjct 1022 GCTCCA-GGATCTGTGA 1037
Score = 193 bits (104), Expect = 3e-48
Identities = 136/151 (90%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 223 GATGTATTTAGTAGCAGTTTTATATCGAAAGAAGAATTGTCTGACGCTGTACATAACGAT 282
|||||| |||||||| ||||||||||| ||||||||| ||||| ||||||| ||||||||
Sbjct 84 GATGTAGTTAGTAGCGGTTTTATATCGGAAGAAGAATGGTCTGCCGCTGTAAATAACGAT 143
Query 283 CCACCATCTGGATGGACTGACGAAGATGATGATGATCAGGTTGACCCGGCTTTGGAGAAA 342
|||||||||||||||||||||||||||||||||||| ||| || || ||||||| ||
Sbjct 144 CCACCATCTGGATGGACTGACGAAGATGATGATGATGTGGTC-AC--GGATTTGGAGCAA 200
Query 343 GAGTTCTATCGCCAAATTCGCGAATCCGACG 373
||||| |||||||||||||||||||||||||
Sbjct 201 GAGTTATATCGCCAAATTCGCGAATCCGACG 231
Score = 159 bits (86), Expect = 3e-38
Identities = 115/128 (90%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 382 GTT-GACATACGTATTCCGACTAGTTCACTTTATGTGTACAAATGTGCCAACAATGATGA 440
||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
Sbjct 307 GTTCGACATACGTATTCCGAGTAGTTTTCTTTATGTGTACAAATGTGCTAACAATGATTA 366
Query 441 CCT-TCGTG--G-TGACATTGTTGGCATTTGTGCTAGAGTGGGACTCCATTGGTACAACT 496
|| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 -CTATCGTGATGCTGACATTGTTGGCATTTGCGCTAGAGTGGGACTCCATTGGTACAACT 425
Query 497 TTCAAAAG 504
|||| |||
Sbjct 426 TTCACAAG 433
Score = 80.5 bits (43), Expect = 3e-14
Identities = 99/124 (80%), Gaps = 11/124 (9%)
Strand=Plus/Plus
Query 104 TTGAAGAAACCACCGTATCTCATGATGTA-TCTAGTTGCGGTTTTATATCGAAAGAAGAA 162
||||||| | |||||| || ||||||||| | |||| |||||||||||||| ||||||||
Sbjct 61 TTGAAGAGATCACCGTGTCGCATGATGTAGT-TAGTAGCGGTTTTATATCGGAAGAAGAA 119
Query 163 TGGT-T----AAATAAACATCCA-CCATCTGGATCTGGATGGACTGACGAAGATGATGAT 216
|||| | |||| | | | ||| | ||||||||||||||||||||||||||||
Sbjct 120 TGGTCTGCCGCTGTAAATAACGATCCA-C--CATCTGGATGGACTGACGAAGATGATGAT 176
Query 217 AATG 220
|||
Sbjct 177 GATG 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5