BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29560.1
Length=2045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491802 jgi|Araly1|491802|fgenesh2_kg.7__1235__AT4G29560.1 2902 0.0
Ahg952400 jgi|Araly1|952400|scaffold_68200002.1 268 9e-71
> Ahg491802 jgi|Araly1|491802|fgenesh2_kg.7__1235__AT4G29560.1
Length=2023
Score = 2902 bits (1571), Expect = 0.0
Identities = 1867/2010 (93%), Gaps = 20/2010 (1%)
Strand=Plus/Plus
Query 1 AGAGGGAAGGACAAAATGGAGGAGTGGATTCCACTATTCGACATTTTCTTGAAGAGTCCA 60
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 AGAGCGAAGGACAAAATGGAGGAGTGGATTCCACTGTTGGACATTTTCTTGAAGAGTCCA 60
Query 61 TCTCCGGAGGCTGAGGCTTCGCTGTGGTTAGACCAGGCTTCGAACCT-TTTTTCTTCCTC 119
||||||||| | ||||||||||||||| |||||||||||||||| || || |||||||||
Sbjct 61 TCTCCGGAGACCGAGGCTTCGCTGTGGCTAGACCAGGCTTCGAA-CTCTTCTTCTTCCTC 119
Query 120 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTTTCATTGCTGAAGAAACAATG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTTTCATTGCTGAAGAAACAATG 179
Query 180 CGATCAGAATTCATCTCCGGTTACGAAGAAGGTTCTTTTCATTGAGACATTACCGAACAT 239
|| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TGACCAGAATTCATCTCCGGCTACGAAGAAGGTTCTTTTCATTGAGACATTACCCAACAT 239
Query 240 GGTTCAGTCAAAGATTCTATCTTTTCTTCTTTTCGAGTATCAGAGGTTTTGCGTTAGTGA 299
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 240 GGTTCAGTCAAAGATTCTATCTTTCCTTCGTTTAGAGTATCAGAGGTTTTGCGTTAGTGA 299
Query 300 TTTGGTTTGGCTGGCTAGAGAAATGTTGGGTAGTGGTGGTAA-TAAAGTTGTCGATTTCT 358
|||||||||||||||||||||||||||| || ||||||| || |||||| ||||||||||
Sbjct 300 TTTGGTTTGGCTGGCTAGAGAAATGTTGTGTGGTGGTGG-AAGTAAAGTAGTCGATTTCT 358
Query 359 GGGTTCAGAGAGATGCACATAACCTGCTCGACAGAATTCCTAAACCAAAATTTGAATGGA 418
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 359 GGGTTCAGAGAGATGCACAGAACCTGCTCGACAGAATTCCTAAACCAAAGTTTGATTGGA 418
Query 419 TATCTAATCTAGATTTGGATTCAGCTGATGAAGACAGCA-TGAAGCAGGTA-TTTGACTC 476
||||| |||||||| |||||||||||||||| | ||| | || | ||| | ||||||||
Sbjct 419 TATCTCATCTAGATATGGATTCAGCTGATGATGGCAGTATTG-GGGAGG-ATTTTGACTC 476
Query 477 TGTACCTGATTGGCTCAGTGAGAAACTTGGTTCTGCTGGTACAATTCTTCCATGGCTTCC 536
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 TGTACCTGATTGGCTAAGTGAGAAGGTTGGTTCTGCTGGTACAATTCTTCCATGGCTTCC 536
Query 537 TGTATCCTGTGATGATGTAGATTCAGAAATGCTGGTTGTTGATTCTTGGAATGGGAAGGA 596
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TGTATCATACGATGATTTAGATTCGGAAATGCTGGTTGTTGATTCTTGGAATGGGAAGGA 596
Query 597 GATAACTCAAATCAAAGAGGATATGGAAGAAGATCAGAGAGAAGTTGTGCATAACATTGA 656
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 GATGACTCAAATCCAAGAGGATATGGAAGAAGATCAGAGAGAAGTTGTGGATAACATTGA 656
Query 657 TCATACCATGACTGTTGGGTTACAAGCTCATGATCATGAAATGGCTGTGAATCTTAGAGC 716
||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 657 TCATACCATGAATGTTGGGTTACAAGCTGATGATCATGAAATGGCGGTGAATCTTAGAGC 716
Query 717 TCAGATTTCGAACTTTGAGTCTACTTCTGAAGTTTTAACCTTGTGTAACGACATTCGGAG 776
|||| || |||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 717 TCAGGTTACGAACTCTGAGTCTACTTCTGAAGTTTTAACCTTGTGTAATGAAATTCGGAA 776
Query 777 ACTTTGCTTGGAGAAGGGTAAGGACTCTTTGAGAGTTTTGGCTTTGATTGAGCCTTGGAA 836
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 777 ACTTTGCTTAGAGAAGGGTAGGGACTCTTTTAGAGTTTTGGCTTTGATTGAGCCTTGGAA 836
Query 837 TGCAGATGATGAGACTGCTGCAGTTTTACTTTCGAGTTTGCATAATGGAAGTGAGGAAGA 896
||||||||||||||||||||| ||||||||||| | ||| || | |||||||||||||||
Sbjct 837 TGCAGATGATGAGACTGCTGCGGTTTTACTTTCTAATTTACAGAGTGGAAGTGAGGAAGA 896
Query 897 AGAGCTTGGTTGGCCAAGCCATGTTCTATGTTCGATCGTGCTTCCAAAGTTTTTGTCTCT 956
|||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 897 TGAGCTTGGTTGGCCAAGCCAGGTTCTATGTTCGATTGTGCTTCCAAAGTTTGTGTCTCT 956
Query 957 TGAGAAGTCTGCCTCTCGTGTGCTGATGTCTTCAACAATCGAGTTTTGCAAGATCCACCA 1016
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CGAGAAGTCCGCCTCTCGTGTGCTGATGTCTTCAACAATCGAGTTTTGCAAGATCCACCA 1016
Query 1017 AAGAGCAGCTGAGTATGCATTGGTGTTCCCTTTAATACTCAGGAAAGAAGGGATAAACAA 1076
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1017 AAGAGCAGCTGAGTATGCATTGGTGTTCCCTTTGATACTCAGGAGAGAAGGGATAAACAA 1076
Query 1077 TTTCATTTGTGAGGTGATTTCAAGGGTTTTGAAAGAGTGCTTGCACTTGGGTCAAATCTC 1136
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1077 TTTCATTTGTGAGGTGATTTCAAGGGTGTTGAAAGAATGCTTGCACTTGGGTCAAATTTC 1136
Query 1137 TGGTTTTTGCCAGAAGTTGCTTTGTGGAAGAACACAAGAGCGGAGGTTTATGTTCCTTCC 1196
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 TGGTTTTTGCCAGAAGTTACTTTGTGGAAGAACAGAAGAGCGGAGGTTTATGTTCCTTCC 1196
Query 1197 CTGCCATCGAGATCTCATATCGGATGAACTGACATGGAATGAATATCTGTTTATCCTTTT 1256
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1197 CTGCCATCGAGAGCTCATATCGGATGAACTGACATGGAATGAATCTCTGTTTATCCTTTT 1256
Query 1257 CCAGAACATATTGATCCATGGCATCCCTTTATCCCAAGATTCCGTCGATTGTCTTGTTTC 1316
||| ||||| |||||||||| | |||||||||||||||| ||||| ||||| ||||||||
Sbjct 1257 CCAAAACATCTTGATCCATGACGTCCCTTTATCCCAAGACTCCGTTGATTGCCTTGTTTC 1316
Query 1317 CAAGGTTCAGGAGTTGGCGGAAAGGTATTCGAAATCGCTAAAATTTGGAAACTTCTTGCT 1376
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 TAAGGTTCAGGAGTTGGCGGAAAGGTATTCCAAATCGCTAAAATTTGGAAACTTCTTGCT 1376
Query 1377 ACATTTTACTGCCAAATGTGCTCCGATGCTACAGGCTCATAAGTATCAGCTGATCGAATC 1436
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1377 ACATTTTACTGCCAAATTTGCTCCGATGCTACAGGCTCATAAGTATCAGCTGACCGAATC 1436
Query 1437 AGTTAAGTGCACCAACAGTCTAGTTACAAAATCTATCCTATCGAAACTCAATGCCCTGTA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGTTAAGTGCACCAACAGTCTAGTTACAAAATCTATCCTATCGAAACTCAATGCCCTGTA 1496
Query 1497 GATCCTATAGCTCAAGTCCAGGTAATTCAAACAATCCTCTGTGGGTTGACATCTGGAGCC 1556
|||||||||||||||||| || |||||| |||||| |||||||| |||||||||||||||
Sbjct 1497 GATCCTATAGCTCAAGTCTAGATAATTCCAACAATTCTCTGTGGTTTGACATCTGGAGCC 1556
Query 1557 TTTGTCTTGTCTCCGAACTTGGTGGTTTAAGAACAGTTAAGGTAAATTTGAAACTTG--- 1613
|||||||||||||| |||||||||||| ||||| | || ||||||| ||||||||||
Sbjct 1557 TTTGTCTTGTCTCCAAACTTGGTGGTTAAAGAATACTTGAGGTAAACTTGAAACTTGAAG 1616
Query 1614 CCTCTGGGATACAATAGCTTTGAAGCTGGAGAAATAATTGCATCAGCAGCAAGATTGTAG 1673
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1617 CCTCTGGGATACAAGAGCTTTGAAGCTGGAGATATAATTGCATCAGCAGCAAGATTTTAG 1676
Query 1674 AATGTGGATATTGATCC-CTGTAATAAGAGGAGTTGTTCAGACCAAATTTAGTCAATAGA 1732
|| |||| |||||| || ||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 1677 AACGTGGCTATTGA-CCACTGTAGTAAGTGGAGGTGTTCAGACCAAATTTAGTCAATAGA 1735
Query 1733 GCAGAAGAGTTTAGTTAATAGAGAAGCTCGACAAGTCCGCAACCGGACACTTAACTTCAA 1792
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1736 GCAGAAGAATTTAGTTAATAGAGCAGCTCGACAAGTCCGCAACCGGACACTTAACTTCAA 1795
Query 1793 GAAACATGTGCTGCGGATGCCCATCTATGGGTCCTCTTACCTCAGCTCGGT-CATCTTCG 1851
|||| | ||| | ||||||||||||| ||| || ||||||| | ||||||| | ||||||
Sbjct 1796 GAAAAAGGTGTTCCGGATGCCCATCTGTGGTTCTTCTTACCACGGCTCGGTGC-TCTTCG 1854
Query 1852 GTCAGACCACAGTCCCTGAAGCTAATGTAGAAGATTGCATCCCCGGTTGGCTCCATGGCT 1911
|||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| |
Sbjct 1855 GTCAGACCACAGTCCCTGAAACTGATGTAGAAGATTGCATTCCCGGTTGGCTTCATGGTT 1914
Query 1912 TCACGAGTTTGAACAAGAACGACCTTCTTGATCTCCAGAGGTGCAGCAAGCTTGAGCTTT 1971
||||||||||| |||| || ||||||||||||||||||| | ||||| ||||||||||
Sbjct 1915 TCACGAGTTTGTACAA---CGGCCTTCTTGATCTCCAGAGGCGTAGCAAACTTGAGCTTT 1971
Query 1972 GTCTTGGAGACAAAAGACA-AGTTAGGCAT 2000
|||| |||||||||||||| | ||||||||
Sbjct 1972 GTCTAGGAGACAAAAGACATA-TTAGGCAT 2000
> Ahg952400 jgi|Araly1|952400|scaffold_68200002.1
Length=210
Score = 268 bits (145), Expect = 9e-71
Identities = 183/201 (91%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 1 AGAGGGAAGGACAAAATGGAGGAGTGGATTCCACTATTCGACATTTTCTTGAAGAGTCCA 60
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 8 AGAGCGAAGGACAAAATGGAGGAGTGGATTCCACTGTTGGACATTTTCTTGAAGAGTCCA 67
Query 61 TCTCCGGAGGCTGAGGCTTCGCTGTGGTTAGACCAGGCTTCGAACCT-TTTTTCTTCCTC 119
||||||||| | ||||||||||||||| |||||||||||||||| || || |||||||||
Sbjct 68 TCTCCGGAGACCGAGGCTTCGCTGTGGCTAGACCAGGCTTCGAA-CTCTTCTTCTTCCTC 126
Query 120 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTT-TCATTGCTGAAGAAACAAT 178
|||||||||||||||||||||||||||||||| ||| || |||| | |||||||||||
Sbjct 127 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTTTTTTTTTCTCATCCCCGAAGAAACAAT 186
Query 179 GCGATCAGAATTCATCTCCGG 199
| || ||||||||||||||||
Sbjct 187 GTGACCAGAATTCATCTCCGG 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76904204655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5