BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29570.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952399 jgi|Araly1|952399|scaffold_68200001.1 1051 0.0
> Ahg952399 jgi|Araly1|952399|scaffold_68200001.1
Length=940
Score = 1051 bits (569), Expect = 0.0
Identities = 810/923 (88%), Gaps = 30/923 (3%)
Strand=Plus/Plus
Query 1 ATGGCACAGCCCATGCGCTTCATGCTCAATCATATAGAAACAGAATCCTACGGCGCTTTC 60
|||||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 21 ATGGCACAGCCCTTTCGCTTCATGCTCAATCAAACAGAAACAGAATCCTACGGCGCTTTC 80
Query 61 A-CCCCTCAAAACCTTAGTCCGCTGATCAATCGTGCGATTCCACACACTCGAGCTCAAAT 119
| |||| | ||||||||| ||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 81 ATCCCC-CGAAACCTTAGGCCGCTGATCGATCGTGCCATTCCACACGCTCGAGCTCAAAT 139
Query 120 CTCCGGATCACCTGTCGTAGCCGTCGGCCGAGGATCATCAGGTCGGACCTTCTTTGGCGT 179
||| |||||||| ||||||||| |||||| | ||||||||||| ||||| |||||||||
Sbjct 140 CTCGGGATCACCCGTCGTAGCCATCGGCCTTGCATCATCAGGTCAGACCTACTTTGGCGT 199
Query 180 CAATGTGGAATTACCAGGTCTGCCTCTTGACCACTCCATCCACGCCGAACAGTTCCTTCT 239
|||||||||||||||||||||||||| | || ||||||| |||||||||||||||||| |
Sbjct 200 CAATGTGGAATTACCAGGTCTGCCTCCTAACTACTCCATACACGCCGAACAGTTCCTTGT 259
Query 240 CGCCAACCTCGCCCTCCACTTCGAGCAAAAACTCGA-ATGCATAGCCATCTCCACTAACG 298
||||||| |||||||||||||||||| ||||||| | | || ||||||||||| ||||||
Sbjct 260 CGCCAACTTCGCCCTCCACTTCGAGCTAAAACTC-ATAGGCTTAGCCATCTCCCCTAACG 318
Query 299 GCTACTACTTCCAGGAGCCATGCGGCCACTGCTGCCAATTACTTCATAAAATCAG-AGAT 357
||||||||||| ||| |||||||||||||||||||||||| |||| ||||||| | ||
Sbjct 319 GCTACTACTTCAAGGCGCCATGCGGCCACTGCTGCCAATTTCTTCGGGAAATCAGCA-AT 377
Query 358 ATGTCTGATACCAAAATCTTGCTCACGAACCCAACCGGTC----AG--A-A-A-GGAACA 408
||||||||||||||| ||||| ||||| ||||||||| | || | | | ||||||
Sbjct 378 ATGTCTGATACCAAAGTCTTGATCACGGGCCCAACCGGCCAGGGAGAAACACACGGAACA 437
Query 409 TACATGAATCTTTCGACCTTCC---TTCCGCAAGGATTAATCTCCCAGGCAAACGTCCCT 465
|||| |||||||||||||| ||| || |||| |||||||| || ||||||||||
Sbjct 438 CGCATGCTTCTTTCGACCTTCCTAATTCTGCTAGGAACAATCTCCCCGGGAAACGTCCCT 497
Query 466 CGCCTTCTCGAGCGGAACTTTAACTGCATCGAAC-TCATAAATCA-CAGTCTCTACATGG 523
||||| ||||||| || | |||| |||||| | | ||| || | ||||||| | ||||
Sbjct 498 CGCCTCCTCGAGCCGAGCGATAACAGCATCG-GCTTTATAGAT-AGCAGTCTCCAAATGG 555
Query 524 ATATCTGCAGTTATTCCGAGCATTGTAACCATCTCAATTGCAGGGCTCTAAAGGCGGCGA 583
||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 556 ATATCTGCAGTAATTCCGAGCATTGTAACCATCTCAGTTGCAGGGCTCTAAGGGCTGCGA 615
Query 584 CCATATCGTACGCGCCGGAT-AGCAAGTGTCCGTCGGGAGTGGCGCTGATTGATCACCGA 642
||| |||||||||| ||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct 616 CCAAATCGTACGCG-CGGTTCAGCAAGTGTCCGTCGGGAGTGGCGCTGATAGATCGCCGA 674
Query 643 GGTAAAGTGTACAGTGGAGGGTACATGGAAAGTGTGGCGCATAACACTAGTTTGGGGCCA 702
|| | ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 675 GGGACAGTGTACAGTGGATGGTTCATGGAAAGTGTGGCGCATAACCCTAGTTTGGGGCCA 734
Query 703 GTACAAGCCGCACTGGTTGACTTCGTGGCTAATGGCGATGGCCAAGAGTTCAAAAATATC 762
|||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct 735 GTACAAGCCGCACTGGTTGACTTCGTGGTTAATGGCGACGGCCAAGAGTTCAAGGAGATC 794
Query 763 GTCGAAGCGGTGCTGGTGGAGAAGAAATGTGGGGTGTTGAGTCAAGAGGCCACTGCGAGG 822
||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||
Sbjct 795 GTCGAAGCGGTGCTGGTGGAGAAGAGAGGTGCGGTGTTGAGTCAAGAGGACACTGCGAGG 854
Query 823 ATGATTTTAGAGAAGATAGCCGACCCCGACTGCATTTTCAGGGTCTTACATTGC-AA-AT 880
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 855 ATGATTTTAGAGAAGATAGCCGACCCCGACTGCGTTTTCAGGGTCTTACATTGCGAATAT 914
Query 881 AA----GTCCTCACACTAATGTG 899
|| |||||||| ||||||||
Sbjct 915 AATTAAGTCCTCACTCTAATGTG 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5