BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29580.2
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328753 jgi|Araly1|328753|fgenesh1_pm.C_scaffold_7000980 793 0.0
Ahg945056 jgi|Araly1|945056|scaffold_701285.1 265 7e-70
> Ahg328753 jgi|Araly1|328753|fgenesh1_pm.C_scaffold_7000980
Length=906
Score = 793 bits (429), Expect = 0.0
Identities = 741/885 (84%), Gaps = 48/885 (5%)
Strand=Plus/Plus
Query 30 TCTCACTCCAACA-GAAGCAGAATCCTCCGGCCCTTTCGAGC-CCGAAACCCTTTTGCCG 87
|||| |||||| | ||| |||||| |||||| |||| | | |||||||| || |||||
Sbjct 24 TCTCGCTCCAA-ATGAAACAGAATTCTCCGGTGATTTC-ACCACCGAAACCATTATGCCG 81
Query 88 CTGATCAATCGGGCGCTTCCACTCGCTCAG-GCTCT-ACCCTCGCAGTCACCCCTCGTAG 145
||||||||||| |||||||||||||||| | |||| | || |||||| ||||| |||||
Sbjct 82 CTGATCAATCGTGCGCTTCCACTCGCTC-GTACTCTAAACC-CGCAGTTACCCCGCGTAG 139
Query 146 CCGTCGGCCGAGGATCATCAGGTCGGACCTTCTTAGGCGTCAATGTGGAATTACCAGGTT 205
||| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 140 TCGTGGGCCGAGGATCCTCAGGTCGGACCTTCTTAGGCGTCAATGTGGACTTACGAGGTC 199
Query 206 TGTCTCCTCTCCACTCCATCCACGCCGGGCAGTTCCTTGTCGTCCATCTCGCCCTCAACA 265
|| ||| || |||||| |||||||||| |||||||||||||||| | ||||||||| |||
Sbjct 200 TGCCTCTTCACCACTCTATCCACGCCGAGCAGTTCCTTGTCGTCAACCTCGCCCTCCACA 259
Query 266 ACGAGCGAACACTCAACTGCTTAGCCTTCTCCTCAAACGGCTCCTACTTCGACCCTCCAT 325
||||||||| |||||||||||||||| ||||| | |||| ||| |||| || | ||||
Sbjct 260 ACGAGCGAAAACTCAACTGCTTAGCCATCTCCGCTGGCGGCACCTTCTTCTACGCGCCAT 319
Query 326 GTCC-CCACTGCTGCCAACTT-CTTCAAGAAATCCGAAATGCGTCTAGTACC-AAACTCT 382
| | |||||||||||| ||| ||||||||||||||| ||||||||| |||| ||| |||
Sbjct 320 G-CGGCCACTGCTGCCA-CTTTCTTCAAGAAATCCGAGATGCGTCTAATACCCAAA-TCT 376
Query 383 TGATCACGGACCCATC---CCGCCAGCGCGACATGTCTCTTTCGACCTACCTTCCGCAAA 439
||||||||||||||| ||||||| | |||| |||||||||||| |||||||||||
Sbjct 377 TGATCACGGACCCATTATTCCGCCAGAACTCCATGCCTCTTTCGACCTTCCTTCCGCAAA 436
Query 440 AATATTTGTCCCTCTACAATGAGGTCCCGAAATACTTCTTCGCTCGCCTTCTCGACGAAA 499
||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||| | |
Sbjct 437 AATATTTCTCCGTCTACAATGAGGTCCCGGAATACTTC---GCTCGCCTTCTCGACCACA 493
Query 500 ATCGCAATAACGGCCTCACCCTCATTAATCCCAATCCCATCAGAGA---CTGCCT-AGAT 555
||||| ||||||||||||||||||| ||||||||||||||||||| |||| | | ||
Sbjct 494 ATCGCCGTAACGGCCTCACCCTCATTGATCCCAATCCCATCAGAGAGATCTGCGTTA-AT 552
Query 556 TCCGAAATTTGTAACCATCTAA-GCTGCAGGGCTCTAAAGGCGGCTAACCGATCGTACGC 614
||||| | ||||| |||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 553 TCCGACAGTTGTACCCATCTAAAG-TGCAGGGCTCTAAACGCGGCTAACCGATCGTACGC 611
Query 615 GCCGTATAGCAAGTCTCCGTCTGGAGTGGCGCTCATGGATTTTCAAGGGAGAGTGTACAG 674
|||||||||||| | | |||||||||||||||| |||||| ||||||| |||||||||
Sbjct 612 GCCGTATAGCAATTGTTCGTCTGGAGTGGCGCTGATGGATCACCAAGGGAAAGTGTACAG 671
Query 675 TGGATGG-AGCATTGAATCTGTGGCG-A-A-CCCTATTTTGGGGGCAGCACAAGCTGCAC 730
|||||| | ||| |||||||||||| | | |||||| | || | |||||||
Sbjct 672 CGGATGGTA-CATGGAATCTGTGGCGTATAACCCTAT---------A-CA-A-GCTGCAC 718
Query 731 TGGTTGACTTCATGACTAATGGTGGCGGCCACGAGTTCAATAACATAGTCCGAG-GGTTT 789
||||||||||| |||||||||||||||| ||||||||| |||| ||||||| || |||
Sbjct 719 TGGTTGACTTCGTGACTAATGGTGGCGGTCACGAGTTCGATAAGATAGTCCAAGCGGTG- 777
Query 790 CTGGTGGAGAAGAGAGATGCGAAGTTGAGTCACTTGGCCACGGCGAGGGAGATTCTAAAT 849
|||||||||||||||| ||||||||| ||||| |||||| ||||||| | ||| | ||
Sbjct 778 CTGGTGGAGAAGAGAGTTGCGAAGTTTAGTCAAGTGGCCAGGGCGAGGAATATTATTAAG 837
Query 850 AAGGTAGCCCACTTCAGCTTCATTTT-ACGTGTCTTACATTGCCA 893
||| |||||||| ||||| | |||| | |||||||||| |||
Sbjct 838 AAGATAGCCCACGACAGCTGCGTTTTCAAA-GTCTTACATTTCCA 881
> Ahg945056 jgi|Araly1|945056|scaffold_701285.1
Length=1057
Score = 265 bits (143), Expect = 7e-70
Identities = 196/220 (89%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 1126 GCTGTTGATCCATCCAACGA-TTCACGTTTCACTTTCCAGACAC-GTGTTACGA-GAGCT 1182
||||||||||| |||||| || |||||||||||| ||||| | ||||||| | ||||
Sbjct 471 GCTGTTGATCCGGACAACGACTT-ACGTTTCACTTTTCAGAC-CTGTGTTAC-ACAAGCT 527
Query 1183 ACATGTCAGAAAGATGAAGACCTGAGGATACTGACTGAAGTCTGTAGAATTAAACCAAAG 1242
|||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 528 ACATGTAAGAATGATGAAGACCTGAGGATACTGACTGAAGTTTGTAGAATAAAACCAAAG 587
Query 1243 ATTCAAGGTACTGGAGA-A--C-AAAGCGATGGAATGACGAAGCTATTGATGGTTTCTAC 1298
||||||||||||||||| | | |||||||||||||| |||||||||||||| |||||||
Sbjct 588 ATTCAAGGTACTGGAGACAAACCAAAGCGATGGAATGGCGAAGCTATTGATGATTTCTAC 647
Query 1299 AAAGGCTATCTACCTAAGTGGATATCGGATGATATTTTGA 1338
|||||| |||||||||||||||||||||||||| |||||
Sbjct 648 AAAGGCGATCTACCTAAGTGGATATCGGATGATGCTTTGA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5