BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29590.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491801 jgi|Araly1|491801|fgenesh2_kg.7__1234__AT4G29590.1 1722 0.0
> Ahg491801 jgi|Araly1|491801|fgenesh2_kg.7__1234__AT4G29590.1
Length=1073
Score = 1722 bits (932), Expect = 0.0
Identities = 1028/1075 (96%), Gaps = 4/1075 (0%)
Strand=Plus/Plus
Query 1 TGCGACACATCATCTTCATCGTCATGTTCTGTCTTGCAAAGTTCAAACCTTTTTACAAAT 60
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1 TGCGACACATCATCTTCATCGTCATGTTCTCTCCT-AAAAGTTCAAACCTTTTTACAAAT 59
Query 61 CAGACAAAACCCAACAATTAATGAAACAATGTCAAAAACGGCTAATTTTCTCAGCCTGAG 120
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||
Sbjct 60 CAGACAAAACCCAACAACTATTGAAACAATGTCAAAAACGGCTAATTTCCTCAGCCTCAG 119
Query 121 ATCCAATCCTCTACCTCCGATTTTCTCCTCCACCGGAAACTCTCCTTTCCTCCGAGCTTC 180
|||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 120 ATCCAATCCTCTGCCTCCGATTTTCTCCTCCACCGGAGATTCTCCTTTCCTCCGAGCTTC 179
Query 181 CTCGGCTCTGAATCTTCCGACAACTGCTTCGAAACCTTTCCACAGTTGGATTCGTGCTTC 240
||| ||||||||||||||||| ||||||||||| |||||| |||||||||| |||||
Sbjct 180 CTCTGCTCTGAATCTTCCGACGGCTGCTTCGAAA---TTCCACCGTTGGATTCGCGCTTC 236
Query 241 TTCACGTCGCCGGTTGGTTCTCGGTGGTTTTGGCGGCGCTTCTTTGTGGATGAACAACAA 300
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 237 TTCACGTCGCCGGTTGGTTCTTGGTGGTTTTGGCGGCGCTTCATTGTGGATGAACAACAA 296
Query 301 TATGTCCGGTAAATTTGGCGGTAAATCTTTCATTGCTTCCGCTAGGCAGACCAATCCTTC 360
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 297 CATGTCCGGTAATTTTGGCGGTAAATCTTTCATTGCGTCCGCTAGGCAGACGAATCCTTC 356
Query 361 TCCCGTCGAACAGGCGTTGAATAAGGTGGATTGGCCAGAGACTTTCCCTTTCAAAGAAGA 420
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 TCCGGTCGAACAGGCGTTGAATAAGGTGGATTGGCCCGAGACTTTCCCTTTCAAAGAAGA 416
Query 421 AGATTTCCAGAGATACGATGAGTCGTCTGATTCAACATTCTACGAAGCTCCAAGGTTTGT 480
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 AGATTTCCAGAGATTCGATGAGTCGTCTGATTCAACATTCTATGAAGCTCCAAGGTTTGT 476
Query 481 GACACACATTGATGATCCAGCTATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCC 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 GACACACATTGATGATCCAGCCATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCC 536
Query 541 TCAGAGCGATACTCCAGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTA 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCAGAGCGATACTCCGGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTA 596
Query 601 TCCACCGGGGTATAGGCAAGAACGAATAGTTGGAATGGGTATGAATGAAGAAGAGCTTAA 660
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TCCACCGGGGTATAGGCAGGAACGAATAGTTGGAATGGGTATGAACGAAGAAGAGCTTAA 656
Query 661 GCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATTCAAATCTGCC 720
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 657 GCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATCCAAAGCTGCC 716
Query 721 TTTTGAAGACAATTCTTTCCAAGTTATAACCAATGTGGTAAGTGTGGATTATCTTACAAA 780
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 TTTTGAAGACAATTCTTTCCAAGTTATTACCAATGTGGTAAGTGTGGATTATCTTACAAA 776
Query 781 GCCGCTTGAAGTGTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAAT 840
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCACTTGAAGTTTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAAT 836
Query 841 GAGCTTCTCGAACCGTTGCTTCTTTACTAAAGCAATCTCGATATGGACATCAACTGGCGA 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 GAGCTTCTCGAACCGTTGCTTCTTTACGAAAGCAATCTCGATATGGACATCAACTGGCGA 896
Query 901 CGCAGATCATGCTCTCATTGTTGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCC 960
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGCAGATCATGCTCTCATTGTCGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCC 956
Query 961 TCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTTTACTC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 TCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTGTACTC 1016
Query 1021 TAGAAAACTCCCCATGGTTTAAACCTGAGATCCAAGCACATCATGTATACACATA 1075
||||||||||||||||| ||||| ||||| ||||| ||| |||||||||||||||
Sbjct 1017 TAGAAAACTCCCCATGGCTTAAAGCTGAGGTCCAAACACTTCATGTATACACATA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5