BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29600.1 Length=924 Score E Sequences producing significant alignments: (Bits) Value Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1 1375 0.0 Ahg491799 jgi|Araly1|491799|fgenesh2_kg.7__1232__AT4G29620.1 1075 0.0 > Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1 Length=930 Score = 1375 bits (744), Expect = 0.0 Identities = 862/920 (94%), Gaps = 3/920 (0%) Strand=Plus/Plus Query 6 GGCACAAGATAAGTACAAGTTCGTTTTCACTGCCAAAGAAGCAGCATCGGAAGGTGTCAC 65 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 3 GGCACAAGATAAGTACAAGTTTGTTTTCACTGCCAACGAAGCAGCATCGGAAGGTGTCAC 62 Query 66 CGAACCCATCAGACTTCCAAAGCTGATCAGAAAGGCGATGTC-TCTGGCTCGGGGTCCAA 124 |||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||| || Sbjct 63 CGAACCCATCAGACTTCCAAAGCTCATCAGAAAGGCGATGTCAT-TGGCTAGGGGTCAAA 121 Query 125 TCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCGGGTCGGGTCTATTTAGGCG 184 |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 122 TCTCCAAATACAAAATCGGAGCGGTTGGACGCGCATCATCGGGTCGGGTCTACTTAGGAG 181 Query 185 TCAATGTCGAATTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCG 244 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCG 241 Query 245 TCACCAACCTCGCACTAAACTCCGAGAAAGGTCTCCGTCAGTTAGCAGTCGCCATCTCTA 304 | ||||||||||| || |||| ||||||||| |||||||||||||| ||||||||||||| Sbjct 242 TAACCAACCTCGCCCTTAACTTCGAGAAAGGCCTCCGTCAGTTAGCTGTCGCCATCTCTA 301 Query 305 GTGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 364 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 ATGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 361 Query 365 GCAACGAGCTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATTCT 424 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 GCAACGAGGTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATTCG 421 Query 425 CGAGCCTTAAGCTCCTCCTTCCGTACAGATTCACCCCTGACGACGTCCTCCCAAAGGGTT 484 || ||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| Sbjct 422 GGAAACTTAAACTCCTCCTTCCGTACAGATTCTCCCCCGACGACGTCCTTCCAAAGGGTT 481 Query 485 CCCCTCTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTTTCGGGTTCTACCGAAGAGA 544 ||||||||||||||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| Sbjct 482 CCCCTCTCCTTCTCGAGAAGCGCGATAACTGTCTCATCCTCTCGCGTTCTGCCGGAGAGA 541 Query 545 TATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTCGT 604 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 542 TATGCTCGTCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTCTT 601 Query 605 TCTCTCCGTACACTGAGTCTCCGTCGGGAGTGGCGCTGCAGGATGACGAAGGGAAGTGGT 664 |||| ||||||||||| ||||| |||||||||||||||| |||||| || |||| | || Sbjct 602 TCTCGCCGTACACTGACTCTCCCTCGGGAGTGGCGCTGCGGGATGAGGACGGGATCTTGT 661 Query 665 ACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGCTG 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 ACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGCTG 721 Query 725 CTCTGGTTGATTTCGTGGCTCGTAGCCGAGGGAAAGGGTTCAATAAGATCGTAGAAGCGG 784 | ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 722 CGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAGGGTTCGATAAGATCGTTGAAGCGG 781 Query 785 TGCTTGTGGAAAAGAATAACGCGAGGGTGAGTCAAGAGCGCACGGCGAAGATGATTTTAG 844 |||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| Sbjct 782 TGCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTTTAG 841 Query 845 ACACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCTACGTGGATCTCCaaa 904 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 842 ACACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCGACGTGGATTTCCAAA 901 Query 905 aaaaGTTTATTACTGAATAG 924 ||| || ||||| ||||||| Sbjct 902 AAA-GTATATTAGTGAATAG 920 > Ahg491799 jgi|Araly1|491799|fgenesh2_kg.7__1232__AT4G29620.1 Length=1176 Score = 1075 bits (582), Expect = 0.0 Identities = 805/908 (89%), Gaps = 34/908 (4%) Strand=Plus/Plus Query 6 GGCACAAGATAAGTACAAGTTCGTTTTCACTGCCAAAGAAGCAGCATCGGAAGGTGTCAC 65 |||||||||| |||||||||||||||||||||||| ||||||||| | ||||| ||||| Sbjct 95 GGCACAAGATCGGTACAAGTTCGTTTTCACTGCCAACGAAGCAGCAGCTGAAGGCGTCAC 154 Query 66 CGAACCCATCAGACTTCCAAAGCTGATCAGAAAGGCGATGTCTCTGGCTCGGGGTCCAAT 125 ||||||||||||||||||||| || ||||| ||||||||||| || ||||||| |||||| Sbjct 155 CGAACCCATCAGACTTCCAAATCTAATCAGGAAGGCGATGTCACTCGCTCGGGCTCCAAT 214 Query 126 CTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCGGGTCGGGTCTATTTAGGCGT 185 ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| Sbjct 215 CTCCAAATACAAAGTCGGAGCCGTTGGACGCACATCATCTGGTCGGGTCTACTTAGGCGT 274 Query 186 CAATGTCGAATTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCGT 245 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 275 CAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCCTCGT 334 Query 246 CACCAACCTCGCACTAAACTCCGAGAAAGGTCTCCGTCAGTTAGCAGTCGCCATCTCTAG 305 |||||||||||| || ||||||||||||| ||| || ||||||| |||||||||||| | Sbjct 335 CACCAACCTCGCCCTCAACTCCGAGAAAGACCTCTGTGAGTTAGCCGTCGCCATCTCT-G 393 Query 306 -TGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 364 |||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||| | Sbjct 394 TTGACGGCAAAGAATTCGGCACGCCGTGCGGACACTGCCGCCAGTTTCTTATGGAGATGA 453 Query 365 GCAACGAGCTTGACATCAAAATCCTGCT-CAAATCAAAGCATGAAGCAGAAGGATCATTC 423 |||||| |||||||||||||||| || | |||| ||||||||||||| |||||||||| Sbjct 454 GCAACGCGCTTGACATCAAAATCATG-TCCAAACCAAAGCATGAAGC---AGGATCATTC 509 Query 424 TCGAGCCTTAAGCTCCTCCTTCCGTACAGATTCACCCCTGACGACGTCCTCCC-AAAGGG 482 ||||||||| || | || | | | || || || |||||||||| ||| || Sbjct 510 TCGAGCCTT-AG--ACACC-T-C---C---TT----CC-GA--ACGTCCTCCCGAAA-GG 550 Query 483 TTCCCCTCTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTTTCGGGTTCTACCGAAGA 542 ||||||| |||||||||||||||||||||||||||||||||| |||||| || ||| ||| Sbjct 551 TTCCCCTTTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTCTCGGGTCCTGCCGGAGA 610 Query 543 GATATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTC 602 ||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||| Sbjct 611 GATATGCTCATCAGACTGTTCACATTTGATGTGCAAGGCTCTAGCCGCAGCAAACAATTC 670 Query 603 GTTCTCTCCGTACACTGAGTCTCCGTCGGGAGTGGCGCTGCAGGATGACGAAGGGAAGTG 662 |||||| |||||||| ||||||||||||||||||||||||| |||| |||| |||||||| Sbjct 671 GTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTGGCGCTGCTGGATAACGACGGGAAGTG 730 Query 663 GTACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGC 722 |||| |||||||||||||||||||||||||| || ||| ||||| |||||||||||||| Sbjct 731 GTACTATGGATGGTACATTGAATCAGTGGCGTCTAACCCTAGTTTTGGACCGGTACAAGC 790 Query 723 TGCTCTGGTTGATTTCGTGGCTCGTAGCCGAGGGAAAGGGTTCAATAAGATCGTA-GAAG 781 ||| ||||||||||| ||| ||||||||||||| ||| |||||||||||||||| || | Sbjct 791 TGCGCTGGTTGATTTTGTGACTCGTAGCCGAGGCAAAAGGTTCAATAAGATCGTCCGA-G 849 Query 782 CGGTGCTTGTGGAAAAGAATAACGCGAGGGTGAGTCAAGAGCGCACGGCGAAGATGATTT 841 ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 850 CGGTGCTGGTGGAAAAGAATAACGCGATCGTGAGTCAAGAGCGCACAGCGAAGATGATTT 909 Query 842 TAGACACTATAGCAGCTCCGAACTGCGATTTCAAGGT-TTTCCATTGCTAC-GTGGATCT 899 ||||||||||||||||||| ||||||||||||||||| |||| |||||| | |||||| Sbjct 910 TAGACACTATAGCAGCTCCAAACTGCGATTTCAAGGTCTTTC-ATTGCT-CTGTGGATGG 967 Query 900 C-Caaaaa 906 | |||||| Sbjct 968 CGCAAAAA 975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34272502383 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5