BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29600.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1 1375 0.0
Ahg491799 jgi|Araly1|491799|fgenesh2_kg.7__1232__AT4G29620.1 1075 0.0
> Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1
Length=930
Score = 1375 bits (744), Expect = 0.0
Identities = 862/920 (94%), Gaps = 3/920 (0%)
Strand=Plus/Plus
Query 6 GGCACAAGATAAGTACAAGTTCGTTTTCACTGCCAAAGAAGCAGCATCGGAAGGTGTCAC 65
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 3 GGCACAAGATAAGTACAAGTTTGTTTTCACTGCCAACGAAGCAGCATCGGAAGGTGTCAC 62
Query 66 CGAACCCATCAGACTTCCAAAGCTGATCAGAAAGGCGATGTC-TCTGGCTCGGGGTCCAA 124
|||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||| ||
Sbjct 63 CGAACCCATCAGACTTCCAAAGCTCATCAGAAAGGCGATGTCAT-TGGCTAGGGGTCAAA 121
Query 125 TCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCGGGTCGGGTCTATTTAGGCG 184
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 122 TCTCCAAATACAAAATCGGAGCGGTTGGACGCGCATCATCGGGTCGGGTCTACTTAGGAG 181
Query 185 TCAATGTCGAATTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCG 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCG 241
Query 245 TCACCAACCTCGCACTAAACTCCGAGAAAGGTCTCCGTCAGTTAGCAGTCGCCATCTCTA 304
| ||||||||||| || |||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 242 TAACCAACCTCGCCCTTAACTTCGAGAAAGGCCTCCGTCAGTTAGCTGTCGCCATCTCTA 301
Query 305 GTGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 361
Query 365 GCAACGAGCTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATTCT 424
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GCAACGAGGTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATTCG 421
Query 425 CGAGCCTTAAGCTCCTCCTTCCGTACAGATTCACCCCTGACGACGTCCTCCCAAAGGGTT 484
|| ||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 422 GGAAACTTAAACTCCTCCTTCCGTACAGATTCTCCCCCGACGACGTCCTTCCAAAGGGTT 481
Query 485 CCCCTCTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTTTCGGGTTCTACCGAAGAGA 544
||||||||||||||||||||||||||||||| |||| ||| ||| ||||| ||| |||||
Sbjct 482 CCCCTCTCCTTCTCGAGAAGCGCGATAACTGTCTCATCCTCTCGCGTTCTGCCGGAGAGA 541
Query 545 TATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTCGT 604
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 542 TATGCTCGTCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTCTT 601
Query 605 TCTCTCCGTACACTGAGTCTCCGTCGGGAGTGGCGCTGCAGGATGACGAAGGGAAGTGGT 664
|||| ||||||||||| ||||| |||||||||||||||| |||||| || |||| | ||
Sbjct 602 TCTCGCCGTACACTGACTCTCCCTCGGGAGTGGCGCTGCGGGATGAGGACGGGATCTTGT 661
Query 665 ACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGCTG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGCTG 721
Query 725 CTCTGGTTGATTTCGTGGCTCGTAGCCGAGGGAAAGGGTTCAATAAGATCGTAGAAGCGG 784
| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 722 CGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAGGGTTCGATAAGATCGTTGAAGCGG 781
Query 785 TGCTTGTGGAAAAGAATAACGCGAGGGTGAGTCAAGAGCGCACGGCGAAGATGATTTTAG 844
|||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 782 TGCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTTTAG 841
Query 845 ACACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCTACGTGGATCTCCaaa 904
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 842 ACACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCGACGTGGATTTCCAAA 901
Query 905 aaaaGTTTATTACTGAATAG 924
||| || ||||| |||||||
Sbjct 902 AAA-GTATATTAGTGAATAG 920
> Ahg491799 jgi|Araly1|491799|fgenesh2_kg.7__1232__AT4G29620.1
Length=1176
Score = 1075 bits (582), Expect = 0.0
Identities = 805/908 (89%), Gaps = 34/908 (4%)
Strand=Plus/Plus
Query 6 GGCACAAGATAAGTACAAGTTCGTTTTCACTGCCAAAGAAGCAGCATCGGAAGGTGTCAC 65
|||||||||| |||||||||||||||||||||||| ||||||||| | ||||| |||||
Sbjct 95 GGCACAAGATCGGTACAAGTTCGTTTTCACTGCCAACGAAGCAGCAGCTGAAGGCGTCAC 154
Query 66 CGAACCCATCAGACTTCCAAAGCTGATCAGAAAGGCGATGTCTCTGGCTCGGGGTCCAAT 125
||||||||||||||||||||| || ||||| ||||||||||| || ||||||| ||||||
Sbjct 155 CGAACCCATCAGACTTCCAAATCTAATCAGGAAGGCGATGTCACTCGCTCGGGCTCCAAT 214
Query 126 CTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCGGGTCGGGTCTATTTAGGCGT 185
||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 215 CTCCAAATACAAAGTCGGAGCCGTTGGACGCACATCATCTGGTCGGGTCTACTTAGGCGT 274
Query 186 CAATGTCGAATTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCGT 245
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 275 CAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCCTCGT 334
Query 246 CACCAACCTCGCACTAAACTCCGAGAAAGGTCTCCGTCAGTTAGCAGTCGCCATCTCTAG 305
|||||||||||| || ||||||||||||| ||| || ||||||| |||||||||||| |
Sbjct 335 CACCAACCTCGCCCTCAACTCCGAGAAAGACCTCTGTGAGTTAGCCGTCGCCATCTCT-G 393
Query 306 -TGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 364
|||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 394 TTGACGGCAAAGAATTCGGCACGCCGTGCGGACACTGCCGCCAGTTTCTTATGGAGATGA 453
Query 365 GCAACGAGCTTGACATCAAAATCCTGCT-CAAATCAAAGCATGAAGCAGAAGGATCATTC 423
|||||| |||||||||||||||| || | |||| ||||||||||||| ||||||||||
Sbjct 454 GCAACGCGCTTGACATCAAAATCATG-TCCAAACCAAAGCATGAAGC---AGGATCATTC 509
Query 424 TCGAGCCTTAAGCTCCTCCTTCCGTACAGATTCACCCCTGACGACGTCCTCCC-AAAGGG 482
||||||||| || | || | | | || || || |||||||||| ||| ||
Sbjct 510 TCGAGCCTT-AG--ACACC-T-C---C---TT----CC-GA--ACGTCCTCCCGAAA-GG 550
Query 483 TTCCCCTCTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTTTCGGGTTCTACCGAAGA 542
||||||| |||||||||||||||||||||||||||||||||| |||||| || ||| |||
Sbjct 551 TTCCCCTTTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTCTCGGGTCCTGCCGGAGA 610
Query 543 GATATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTC 602
||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 611 GATATGCTCATCAGACTGTTCACATTTGATGTGCAAGGCTCTAGCCGCAGCAAACAATTC 670
Query 603 GTTCTCTCCGTACACTGAGTCTCCGTCGGGAGTGGCGCTGCAGGATGACGAAGGGAAGTG 662
|||||| |||||||| ||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 671 GTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTGGCGCTGCTGGATAACGACGGGAAGTG 730
Query 663 GTACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGC 722
|||| |||||||||||||||||||||||||| || ||| ||||| ||||||||||||||
Sbjct 731 GTACTATGGATGGTACATTGAATCAGTGGCGTCTAACCCTAGTTTTGGACCGGTACAAGC 790
Query 723 TGCTCTGGTTGATTTCGTGGCTCGTAGCCGAGGGAAAGGGTTCAATAAGATCGTA-GAAG 781
||| ||||||||||| ||| ||||||||||||| ||| |||||||||||||||| || |
Sbjct 791 TGCGCTGGTTGATTTTGTGACTCGTAGCCGAGGCAAAAGGTTCAATAAGATCGTCCGA-G 849
Query 782 CGGTGCTTGTGGAAAAGAATAACGCGAGGGTGAGTCAAGAGCGCACGGCGAAGATGATTT 841
||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 850 CGGTGCTGGTGGAAAAGAATAACGCGATCGTGAGTCAAGAGCGCACAGCGAAGATGATTT 909
Query 842 TAGACACTATAGCAGCTCCGAACTGCGATTTCAAGGT-TTTCCATTGCTAC-GTGGATCT 899
||||||||||||||||||| ||||||||||||||||| |||| |||||| | ||||||
Sbjct 910 TAGACACTATAGCAGCTCCAAACTGCGATTTCAAGGTCTTTC-ATTGCT-CTGTGGATGG 967
Query 900 C-Caaaaa 906
| ||||||
Sbjct 968 CGCAAAAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5