BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29620.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491799 jgi|Araly1|491799|fgenesh2_kg.7__1232__AT4G29620.1 1581 0.0
Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1 987 0.0
> Ahg491799 jgi|Araly1|491799|fgenesh2_kg.7__1232__AT4G29620.1
Length=1176
Score = 1581 bits (856), Expect = 0.0
Identities = 1006/1079 (93%), Gaps = 8/1079 (1%)
Strand=Plus/Plus
Query 4 TCAACATAAAATCACAAAACACGACAATGGCACAACGTCCTAACTTGTTATCTCATTTGC 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAACATAAAATCTCAAAACACGACAATGGCACAACGTCCTAACTTGTTATCTCATTTGC 60
Query 64 AAGATCTGGTCACCAAATTTAAAAACATGACAATGGCACAAGATCGGTTCAAGTTCGTTT 123
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AAGATCTGGTCACAAAAATTAAAAACATGACAATGGCACAAGATCGGTACAAGTTCGTTT 120
Query 124 TCACTGCCAACGAAGCAGC-GTTGGAAGGTGTCACCGACCCCATCAGACTTCCAAATCTG 182
||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||||||
Sbjct 121 TCACTGCCAACGAAGCAGCAGCT-GAAGGCGTCACCGAACCCATCAGACTTCCAAATCTA 179
Query 183 ATCAGAAAGGCGATGTGTCTCGCTCGGGCTCCAATCTCCAAATACAAAGTCGGAGCCGTT 242
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCAGGAAGGCGATGTCACTCGCTCGGGCTCCAATCTCCAAATACAAAGTCGGAGCCGTT 239
Query 243 GGACGCGCATCATCAGGTCGGGTCTACTTAGGCGTCAATGTCGACTTCCCAGGTCTTCCT 302
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGACGCACATCATCTGGTCGGGTCTACTTAGGCGTCAATGTCGACTTCCCAGGTCTTCCT 299
Query 303 CTTCACCACTCCATCCACGCCGAGCAATTCCTCGTTACCAACCTCGCACTCAACTACGAG 362
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 300 CTTCACCACTCCATCCACGCCGAGCAATTCCTCGTCACCAACCTCGCCCTCAACTCCGAG 359
Query 363 AAAGACCTCTGTAAGTTAGCCGTCGCCATCTCTACTGACGGCCTCGAATTCGGCACACCG 422
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 360 AAAGACCTCTGTGAGTTAGCCGTCGCCATCTCTGTTGACGGCAAAGAATTCGGCACGCCG 419
Query 423 TGCGGAAACTGCCTCCAATTTCTTATGGAGATGAGCAACGCGCTTGATATGAAAATCCTG 482
|||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||| ||
Sbjct 420 TGCGGACACTGCCGCCAGTTTCTTATGGAGATGAGCAACGCGCTTGACATCAAAATCATG 479
Query 483 TCCAAACCAAAGCATGAAGCAGGATCATTCTCGAGCCTTAGACTCCTCCTTCCGAACGTC 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TCCAAACCAAAGCATGAAGCAGGATCATTCTCGAGCCTTAGACACCTCCTTCCGAACGTC 539
Query 543 CTCCCGAAAGGTTCCCCTTTCCTTCTCGAGAAGCGCTATAACTGCCTCACCCTCTCGGGT 602
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CTCCCGAAAGGTTCCCCTTTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTCTCGGGT 599
Query 603 TCTGCCGGAGAGATATGCTCATTAGATTGTTCCCATTTGAAGCGCAGGGCTCTGGCCGCG 662
||||||||||||||||||||| ||| ||||| ||||||| | ||| |||||| |||||
Sbjct 600 CCTGCCGGAGAGATATGCTCATCAGACTGTTCACATTTGATGTGCAAGGCTCTAGCCGCA 659
Query 663 GCAAACAATTCGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTAGCGCTGCTGGATAAC 722
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 GCAAACAATTCGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTGGCGCTGCTGGATAAC 719
Query 723 GACGGGAACTGGTACCGTGGATGGTATATTGAATCAGTGGCGTCGAACCCTAGTTTGGGT 782
|||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 720 GACGGGAAGTGGTACTATGGATGGTACATTGAATCAGTGGCGTCTAACCCTAGTTTTGGA 779
Query 783 CCGGTACAAGCTGCGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAATGTTCAATAAG 842
|||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct 780 CCGGTACAAGCTGCGCTGGTTGATTTTGTGACTCGTAGCCGAGGCAAAAGGTTCAATAAG 839
Query 843 ATCGTCCAAGCGGTGCTGGTGGAAAAGAATAACGCGAGCGTGAGTCAAGAGCGCACAGCG 902
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 ATCGTCCGAGCGGTGCTGGTGGAAAAGAATAACGCGATCGTGAGTCAAGAGCGCACAGCG 899
Query 903 AAGATAATTTTAGACACTATAGC---TCCGAACTGCGATTTCAAGGTCTTTCATTGCTCC 959
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 900 AAGATGATTTTAGACACTATAGCAGCTCCAAACTGCGATTTCAAGGTCTTTCATTGCTCT 959
Query 960 GTGGATTGCGCAAAAAGACTGAAGTATCTTCGTGAAACCCTGGTGATAGATACGT---TA 1016
|||||| ||||||||||||| |||||||||||||| || |||||||||||||| | ||
Sbjct 960 GTGGATGGCGCAAAAAGACTCAAGTATCTTCGTGATACGCTGGTGATAGATACATCAGTA 1019
Query 1017 GGGGATTACACTGGTCTTCATTATTAAACTAATTTATTATTCTATCATAATTATGCTTT 1075
|||||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||
Sbjct 1020 GGGGATTACACTGGTCTTCACTATTAAACTATTTTATTATCCTATCATAATAATGCTTT 1078
Score = 128 bits (69), Expect = 9e-29
Identities = 85/93 (91%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1121 TTTTAATAATGTCATAGAATCATAATTACGTTATGTTTTCTTCTCCGGTTCATGTTACTT 1180
||||||||||||||||||||| |||||| |||||||| || ||| |||||||||||| |
Sbjct 1084 TTTTAATAATGTCATAGAATCGTAATTATGTTATGTTGTCCTCTTGGGTTCATGTTACCT 1143
Query 1181 TTAATTTCAGTGGTGTCAATATATAATATATTC 1213
|| ||||||||||||||||||||||||||||||
Sbjct 1144 TTCATTTCAGTGGTGTCAATATATAATATATTC 1176
> Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1
Length=930
Score = 987 bits (534), Expect = 0.0
Identities = 788/907 (87%), Gaps = 31/907 (3%)
Strand=Plus/Plus
Query 96 ATGGCACAAGATCGGTTCAAGTTCGTTTTCACTGCCAACGAAGCAGCGTTGGAAGGTGTC 155
|||||||||||| || |||||| ||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATGGCACAAGATAAGTACAAGTTTGTTTTCACTGCCAACGAAGCAGCATCGGAAGGTGTC 60
Query 156 ACCGACCCCATCAGACTTCCAAATCTGATCAGAAAGGCGATGT-GTCTCGCTCGGGCTCC 214
||||| ||||||||||||||||| || |||||||||||||||| | | ||| ||| ||
Sbjct 61 ACCGAACCCATCAGACTTCCAAAGCTCATCAGAAAGGCGATGTCAT-TGGCTAGGGGTCA 119
Query 215 AATCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCAGGTCGGGTCTACTTAGG 274
|||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 120 AATCTCCAAATACAAAATCGGAGCGGTTGGACGCGCATCATCGGGTCGGGTCTACTTAGG 179
Query 275 CGTCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCCT 334
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 AGTCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCT 239
Query 335 CGTTACCAACCTCGCACTCAACTACGAGAAAGACCTCTGTAAGTTAGCCGTCGCCATCTC 394
||| ||||||||||| || |||| |||||||| |||| || ||||||| |||||||||||
Sbjct 240 CGTAACCAACCTCGCCCTTAACTTCGAGAAAGGCCTCCGTCAGTTAGCTGTCGCCATCTC 299
Query 395 TACTGACGGCCTCGAATTCGGCACACCGTGCGGAAACTGCCTCCAATTTCTTATGGAGAT 454
|| |||| || ||||||||||| | |||||||||||||||| ||| |||||||||||||
Sbjct 300 TAATGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGAC 359
Query 455 GAGCAACGCGCTTGATATGAAAATCCTGTC-CAAACCAAAGCATGAAGC---AGGATCAT 510
||||||| | |||| || ||||||||| | |||| ||||||||||||| ||||||||
Sbjct 360 CAGCAACGAGGTTGACATCAAAATCCTG-CTCAAATCAAAGCATGAAGCAGAAGGATCAT 418
Query 511 TCTCGAGCCTTAGACTCCTCCTTCCG---A-A--------CGTC--C-TCC--CGAAA-G 552
|| || |||| ||||||||||||| | | || | | ||| | ||| |
Sbjct 419 TCGGGAAACTTAAACTCCTCCTTCCGTACAGATTCTCCCCCGACGACGTCCTTCCAAAGG 478
Query 553 GTTCCCCTTTCCTTCTCGAGAAGCGCTATAACTGCCTCACCCTCTCGGGTTCTGCCGGAG 612
|||||||| ||||||||||||||||| ||||||| |||| ||||||| ||||||||||||
Sbjct 479 GTTCCCCTCTCCTTCTCGAGAAGCGCGATAACTGTCTCATCCTCTCGCGTTCTGCCGGAG 538
Query 613 AGATATGCTCATTAGATTGTTCCCATTTGAAGCGCAGGGCTCTGGCCGCGGCAAACAATT 672
|||||||||| | ||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 539 AGATATGCTCGTCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATT 598
Query 673 CGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTAGCGCTGCTGGATAACGACGGGAACT 732
| |||||||||||||| || ||||| |||||||| ||||||| |||| | ||||||| ||
Sbjct 599 CTTTCTCGCCGTACACTGACTCTCCCTCGGGAGTGGCGCTGCGGGATGAGGACGGGATCT 658
Query 733 GGTACCGTGGATGGTATATTGAATCAGTGGCGTCGAACCCTAGTTTGGGTCCGGTACAAG 792
||||||||||||||| |||||||||||||||| | ||| |||||||| ||||||||||
Sbjct 659 TGTACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAG 718
Query 793 CTGCGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAATGTTCAATAAGATCGTCCAAG 852
|||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct 719 CTGCGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAGGGTTCGATAAGATCGTTGAAG 778
Query 853 CGGTGCTGGTGGAAAAGAATAACGCGAGCGTGAGTCAAGAGCGCACAGCGAAGATAATTT 912
|||||||||||||||||||||| ||||| |||||||||||| ||| |||||||| ||||
Sbjct 779 CGGTGCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTT 838
Query 913 TAGACACTATAGC---TCCGAACTGCGATTTCAAGGTCTTTC-ATTGCTCCGTGGATTGC 968
||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||| |
Sbjct 839 TAGACACTATAGCAGCTCCGAACTGCGATTTCAAGGT-TTTCCATTGCGACGTGGATTTC 897
Query 969 GCAAAAA 975
||||||
Sbjct 898 -CAAAAA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5