BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29640.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945051 jgi|Araly1|945051|scaffold_701280.1 593 6e-169
Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1 195 8e-49
> Ahg945051 jgi|Araly1|945051|scaffold_701280.1
Length=932
Score = 593 bits (321), Expect = 6e-169
Identities = 450/511 (88%), Gaps = 14/511 (3%)
Strand=Plus/Plus
Query 1 ATGGCACAACAGTACAAGTTCGTTTTCACTGCCGAACAAGCCGCATCCGAAGGTGTCACC 60
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 21 ATGGCTCAACAGTACAAGTTCGTTTTCACTAACGAAGAAGCCGCATCCGAAGGTGTCACC 80
Query 61 GACCACAAGAAACTTCCGAAGCTAATCAGAAA-GGCTAGGAATCTCGTTAAAGCACCAAG 119
||||||||||||||||| || |||||| |||| |||||||||||||| ||| | ||||
Sbjct 81 GACCACAAGAAACTTCCAAAACTAATC-GAAAAGGCTAGGAATCTCGCTAAGGTTCCAAT 139
Query 120 CAAAGTCGGAGCCGTTGGACGCGCATCATCTGGTCGATTCTACTTAGGCGTCAATGTAGA 179
||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 140 CAAAGTCGGAGCCATTGGACGCGCATCATCTGGTCGGGTCTACTTAGGCGCCAATGTCGA 199
Query 180 ATTTAAAGGTCTT-CTTCCTCATT-TTTCCATCCACGCTGAGCAATTCCTGATCGCCAAC 237
|||| |||||||| || ||| | |||| ||||| ||||| |||||||| |||||||||
Sbjct 200 ATTTGAAGGTCTTTCT-CCT-AGCCTTTCAATCCAAGCTGAACAATTCCTAATCGCCAAC 257
Query 238 CTTGCCCTCAAT-TCCGAGCCAAAACTCACTCACTTAGCCGTCTCCGATAATGGCACCGT 296
|| |||||||| || ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 258 CTCGCCCTCAACCTC-GAGTCAAAACTCACTCACTTAGCCGTCTCCCATAATGGCACCGT 316
Query 297 CTTCCAAGACCCGTGCTAC-GACTGCACCCGCTTTCTTAAGGAGATCAACAATGCACATC 355
|||||| |||||||||||| | |||||||| ||||||| ||||||| | | |||||| ||
Sbjct 317 CTTCCACGACCCGTGCTACCG-CTGCACCCACTTTCTTCAGGAGATGACCGATGCACCTC 375
Query 356 AAATTGAAATTCTGATCAAAAAC-GCTCACGGCCGA-GACGGATCATTCAAGAGCCTCGA 413
|||| ||||||||||| |||||| | ||| | || |||||||||||||||||||||||
Sbjct 376 AAATAGAAATTCTGATAAAAAACAGAA-ACGAC-GAAGACGGATCATTCAAGAGCCTCGA 433
Query 414 GAGCCACATGCCAGACGAATTCGGCTCCGAAAGTATCCTCTCGGCAGAACCCTCTCTCCT 473
|||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||
Sbjct 434 GAGCCACATGCCAGACAAATTCGGCCCCGAAAGTATCCTCCCGGCAGAACCGTCTCTCCT 493
Query 474 TCTCATGGAGCGCGATAACTGTCTCGCCCTC 504
|||| ||||| | |||||| |||||||||||
Sbjct 494 TCTCGTGGAGTGTGATAACCGTCTCGCCCTC 524
Score = 449 bits (243), Expect = 1e-125
Identities = 312/345 (90%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 548 ACCTTTGTTCCTTTCTAAAGTTGGAGGCTCTAAAGGCGGCGAACAAATCATACGCGCCAT 607
|||||| | || |||||||||||| |||| || |||||||||| |||||||||||||||
Sbjct 535 ACCTTTATCCCCTTCTAAAGTTGGTGGCTTTACAGGCGGCGAAAAAATCATACGCGCCAC 594
Query 608 ACAGAAAGTGTCCGTCAGGGGTGGCGCTGTTTTGCGAAGGGGAAGTGTAT-GCAGGATGG 666
|||| ||||||||||| |||||||||||| ||||||||||| |||||||| | |||||||
Sbjct 595 ACAGCAAGTGTCCGTCGGGGGTGGCGCTGGTTTGCGAAGGGAAAGTGTATAG-AGGATGG 653
Query 667 TACATTGAAACAGTGGATCG--GACCATTAGTTTGGGGCCAGTACAAGCGGCGCTGGTTG 724
||||||||||| |||| || | ||||||||||||||||||||||||||||||||||
Sbjct 654 TACATTGAAACGGTGG--CGTATAATATTAGTTTGGGGCCAGTACAAGCGGCGCTGGTTG 711
Query 725 ATTTCATAGCTCGTGGCGAAGGCAAAGGGTTCGATAAGATCACTGGAGCTGTGCTAGTGG 784
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 712 ATTTCATGGCTCGTGGCGAAGGCAAAGGGTTCGATAAGATCACCCGAGCTGTGCTGGTGG 771
Query 785 AGAAGAAGGATGCGAAGGTGGGGCAAGAGGACACGGCGAGGAAGCTTCTAGAGAAGATAG 844
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 772 AGAAGAAGGATGCGAAGGTTAGGCAAGAGGACACGGCGAGGACGCTTCTAGAGAAGATAG 831
Query 845 CAGCTCCGAACTGCGATTTCAAGGTCTTCCATTGCCAGGAGGAGC 889
||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 832 CAGCTCCGAACTGCGATTTTAAGGTCTTCCATTGCTACGAGCAGC 876
Score = 130 bits (70), Expect = 2e-29
Identities = 111/129 (86%), Gaps = 9/129 (7%)
Strand=Plus/Plus
Query 900 GATCACCGGAGCTGTGCTAGTGGAGAAGAAGGATGCGAAGGAGGGGCAAGA-G----GG- 953
||||||| |||||||||| |||||||||||||||||||||| ||||||| | ||
Sbjct 749 GATCACCCGAGCTGTGCTGGTGGAGAAGAAGGATGCGAAGGTTAGGCAAGAGGACACGGC 808
Query 954 GA--A-GCTTCTAGAGAAGATAGCAGCTCCGAACTGCGATTTCAAGGTCTCCCATTGCGA 1010
|| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 809 GAGGACGCTTCTAGAGAAGATAGCAGCTCCGAACTGCGATTTTAAGGTCTTCCATTGCTA 868
Query 1011 CGAGGAGCT 1019
|||| ||||
Sbjct 869 CGAGCAGCT 877
> Ahg491800 jgi|Araly1|491800|fgenesh2_kg.7__1233__AT4G29600.1
Length=930
Score = 195 bits (105), Expect = 8e-49
Identities = 185/223 (83%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 661 GGATGGTACATTGAAACAGT-G-G-ATCGGACCATTAGTTTGGGGCCAGTACAAGCGGCG 717
||||||||||||||| |||| | | || | ||| |||||||| || |||||||| |||
Sbjct 667 GGATGGTACATTGAATCAGTGGCGTAT-AGCCCA--AGTTTGGGACCGGTACAAGCTGCG 723
Query 718 CTGGTTGATTTCATAGCTCGT-GGCGAAGGCAAAGGGTTCGATAAGATCACTGGAGCTGT 776
|||||||||||| | |||||| | || |||||||||||||||||||||| || ||| ||
Sbjct 724 CTGGTTGATTTCGTGGCTCGTAGCCG-AGGCAAAGGGTTCGATAAGATCGTTGAAGCGGT 782
Query 777 GCTAGTGGAGAAGAAGGATGCGAAGGTGGGGCAAGAGGACACGGCGAGGAAGCTTCTAGA 836
||| ||||| ||||| |||||| |||| | ||||||| || ||||| || | || ||||
Sbjct 783 GCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTTTAGA 842
Query 837 GAAGATAGCAGCTCCGAACTGCGATTTCAAGGTCTTCCATTGC 879
| ||||||||||||||||||||||||||||| |||||||||
Sbjct 843 CACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGC 885
Score = 71.3 bits (38), Expect = 1e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 970 ATAGCAGCTCCGAACTGCGATTTCAAGGTCTCCCATTGCGACGAGGA 1016
||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 847 ATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCGACGTGGA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5