BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29650.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491798 jgi|Araly1|491798|fgenesh2_kg.7__1231__AT4G29650.1 1022 0.0
> Ahg491798 jgi|Araly1|491798|fgenesh2_kg.7__1231__AT4G29650.1
Length=756
Score = 1022 bits (553), Expect = 0.0
Identities = 690/756 (91%), Gaps = 10/756 (1%)
Strand=Plus/Plus
Query 6 ACAACAGCTCAAATTCATTCTCACTCGTGAAGAAGCAGCATCCAAAGGCGTCTCCAGGCC 65
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 6 ACAACAGCTCAAATTCATTCTCACTCTTGAAGAAGCAGCATCCAAAGGCGTCTCCAGCCC 65
Query 66 CAGTGACTTAGTGAAGCTAG-AAGAAGAAGCGATGATCCTGGCTAGGGCTCCAATCTCCG 124
||||||||| ||||||| | ||||||| ||||| || |||||| |||||||||||||||
Sbjct 66 CAGTGACTTCCTGAAGCT-GAAAGAAGATGCGATTATTCTGGCTCGGGCTCCAATCTCCG 124
Query 125 GCGTCCAAGACGCAGTCCTTGGACTTGCCTCATCCGATCGAATCTTCTTAGGCGTCAATG 184
| ||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||
Sbjct 125 GAGTCCAAGACGCAGTCCTTGCACTTGCATCATCGGATCGAGTCTTCTTAGGCGTCAATG 184
Query 185 TCGAATTTGAAGGCCTTCCTCTTCACCACTCCATCAGCGCCGAGCAATTCCTCGTCGCTA 244
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 185 TCGAATTTGAAGGTCTTCCTCTTCACCACTCCATCAGCTCCGAGCAATTCCTCGTCGCTA 244
Query 245 ACCTCGCACTCAACTTCGAGCAAGAACTCCACGCTTGCCT-CATTCCGTCTAGATTCTAC 303
||||||||||||||||||||||||||||||||||||| || | ||||||| |||||||||
Sbjct 245 ACCTCGCACTCAACTTCGAGCAAGAACTCCACGCTTGTCTTC-TTCCGTCAAGATTCTAC 303
Query 304 CTCGAAAGCTTCGAGGAAGACGTCCCTCTCCTTCTCGTGCCGCAGAATAACCGCCTCGCC 363
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 304 CTCGAAAGCTTCGAGGAAGACGTCCCTCTCCTTCTCGTGCCTCAGCATAACCGCCTCGCC 363
Query 364 C-ACTCGGATCCATTTTCCGCCGCAGAGATCTGCTCAAACCCCGAGCATTGTTCTCATCT 422
| | |||||||| ||||||| |||||||||||| |||||| |||||||||||| ||||
Sbjct 364 CTA-TCGGATCCCGTTTCCGCAGCAGAGATCTGCGCAAACCGCGAGCATTGTTCCCATCC 422
Query 423 TAAGTGTAGGGCCCTAACGGCGGCAAACAAATCGAACGCACAGTATAGCAAGTGTCCGTC 482
||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct 423 GAAGTGTAGGGCTCTAACAGCGGCAAACAAATCGTACGCACAGTACAGCAAGTGTCCGTC 482
Query 483 AGGGGTGGCGCTGATTTGCGAAGGGGAAGTTTACGGAGGATGGTGCATTGAATCGGCGGC 542
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 483 GGGGGTGGCGCTGATTTGCGAAGGGGAAGTGTACAAAGGATGGTGCATTGAATCGGCAGC 542
Query 543 GTATAACCTTAGTTTGGGACCAGTACAAGCGGCGCTTGTTGATTTTATGGCTCGTGGCGA 602
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 543 GTATAACCTTAGTTTGGGACCAGTACAAGCGGCGCTTGTTGATTTCGTGGCTCGTGGTGA 602
Query 603 AGGCAAAGGGTTTGAGATGATCACTGGAGCTGTGCTGGTGGAGATGAATGATGCGAAAGT 662
||| |||||||| ||||||||||| ||||| |||||| ||||||||||||||||||| ||
Sbjct 603 AGGTAAAGGGTTCGAGATGATCACCGGAGCGGTGCTGATGGAGATGAATGATGCGAATGT 662
Query 663 GAGTCAAGAGGCCACTGCGAGGATTCTTTT-GAAGACTATAGCCCCCGGGTGCAATTTCA 721
||||||||| ||||| || ||| ||||||| || |||||||||||| ||||| ||| |
Sbjct 663 GAGTCAAGAAGCCACGGCAAGGGTTCTTTTAGA-GACTATAGCCCCAGGGTGTGTTTTGA 721
Query 722 GTGTCTTCCGTTG-TCACAAGACCGCAGAAAATTGA 756
|||||||| ||| | ||||||||||||||||||||
Sbjct 722 ATGTCTTCCATTGCT-ACAAGACCGCAGAAAATTGA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5