BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29670.2
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491796 jgi|Araly1|491796|fgenesh2_kg.7__1229__AT4G29670.1 1136 0.0
Ahg492196 jgi|Araly1|492196|fgenesh2_kg.7__1629__AT4G26160.1 207 1e-52
> Ahg491796 jgi|Araly1|491796|fgenesh2_kg.7__1229__AT4G29670.1
Length=1075
Score = 1136 bits (615), Expect = 0.0
Identities = 696/733 (95%), Gaps = 13/733 (2%)
Strand=Plus/Plus
Query 8 GAGACATGATGAGAGAAATATCACTGGAATCTGAACCAGACAGTTTCTGATCTTCTTCTC 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGACATGATGAGAGAAATATCACTGGAATCTGAACCAGACAGTTTCTGATCTTCTTCTC 60
Query 68 CTTAGAGGATCTCTCGGAGAAGATTCAAAACCAAGAACAATCTCAGtctctatctctctc 127
| |||||||||||||||||||||||||||||| || || | || |||| | |||||
Sbjct 61 C-TAGAGGATCTCTCGGAGAAGATTCAAAACC---AA-AA-C-CAATCTC-A---CTCTC 109
Query 128 tctGGGTGCATTTAGATGGCTGGAGTTGTGCGATTAACGACGACGTCGGTTCAAGCCATT 187
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 110 TCTGGGTTCATTTAGATGGCTGGAGTTGTGCGATTAACGGCGACGTCGGTTCAAGCCATT 169
Query 188 CGTGTCTCCTCGTCCTTCAGCTCCTTTGCCACCGCTCTTAATCCTCTGCAACCTTGCT-T 246
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 170 CGCGTCTCCTCGTCCTTCAGCTCCTTCGCCACCGCTCTTAATCCTCTGCAACCTTG-TCT 228
Query 247 ACCTCCAAACTCGAATCTGAATTCCGACAAGAGATTGCGTCTTCTCTCATCTTCTCCTTC 306
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ACCTTCAAATTCGAATCTGAATTCCGACAAGAGATTGCGTCTTCTCTCATCTTCTCCTTC 288
Query 307 CTGCTCGTCTTCTCATTACCACCCATCTTCTGGTCTCGGAAGCCATCTCCCCCTTAGACG 366
|||||||||||||||||||| |||||||||||| ||||||||||| || |||| |||
Sbjct 289 GTGCTCGTCTTCTCATTACCATCCATCTTCTGGTTTCGGAAGCCATAGCCTTCTTAAACG 348
Query 367 ACCCAAGAGCCAAGTGGTTCGTGTCAAGGTAGATGAAAATGTAGCCGAGACAGAGCCACC 426
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ACCCAAGAGCCAGGTGGTTCGTGTCAAGGTAGATGAAAATGTAGCCGAGACAGAGCCACC 408
Query 427 GAAATGGTGGGAGAGGAATGCTCCAAACATGGTCGATATTCATTCTACTGAAGAGTTCTT 486
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 409 GAAATGGTGGGAGAGGAATGCTCCAAACATGGTCGACATTCATTCTACTGAAGAGTTCTT 468
Query 487 GAGCGCTTTAAGCGGTGCGGGTGAAAGATTAGTTATTGTAGAGTTTTATGGAACTTGGTG 546
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 469 GAGCGCTTTAAGCGGAGCGGGTGAAAGATTAGTCATTGTAGAGTTTTATGGAACTTGGTG 528
Query 547 TGCTTCTTGCAGAGCATTGTTCCCAAAGCTTTGCAAGACAGCGGTGGAACATCCCGATAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGCTTCTTGCAGAGCATTGTTCCCAAAGCTTTGCAAGACAGCGGTGGAACATCCCGATAT 588
Query 607 AGTGTTCCTTAAAGTAAACTTTGATGAGAATAAACCGATGTGCAAGAGTTTGAACGTGAG 666
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 589 AGTGTTCCTCAAAGTAAACTTTGATGAGAATAAACCAATGTGCAAGAGTTTGAACGTGAG 648
Query 667 AGTGCTTCCTTTTTTCCACTTTTACCGTGGAGCTGATGGTCAGCTTGAGTCATTCTCATG 726
||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 649 AGTGCTTCCTTATTTCCACTTTTACCGTGGAGCTGATGGCCAGCTTGAGTCCTTCTCATG 708
Query 727 TTCTCTTGCTAAG 739
|||||||||||||
Sbjct 709 TTCTCTTGCTAAG 721
Score = 442 bits (239), Expect = 3e-123
Identities = 266/279 (95%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 952 AGTTTCAGAAGATAAAAGATGCAATCCAACTGCACAATACCGATCGTTGCAGCCTCGGTC 1011
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 720 AGTTTCAGAAGATAAAAGATGCCATCCAACTGCACAACACCGATCGTTGCAGCCTCGGTC 779
Query 1012 CAGCCAAGGTACCTGAAGGCTTAACATTAGCCAAACCAGCTGCATCAAGTTGAAGTGCCA 1071
||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 780 CAGCCAAGGTACCTGAAGGATTAACCTTAGCCAAACCAGCTGGATCAAGTTGAAGTGCCA 839
Query 1072 GATTTTTAGATATATTACTAAGGCAACAATCTTTGGTTGCTCAAGCAAATACTCAGCTTA 1131
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GACTTTTAGATATATTACTAAGGCAACAATCTTTGGTTGCTCAAGCAAATACTCAGCTTA 899
Query 1132 AAATTCTGTATATCGTCATATTTTTGGGTGTAAAAGAATACTTCCTAAAGCCAGTTACGA 1191
||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||
Sbjct 900 AAATTCTGTATATCGTCATATTTTTTGGTGTAAAAGAATACTTCCTGAATCCAATTACGA 959
Query 1192 TTCTTCTGCTAATA-GTCAATTGCAAATGTATTTTCACT 1229
|||||||||||||| | ||| ||||||||||||||||||
Sbjct 960 TTCTTCTGCTAATACG-CAAGTGCAAATGTATTTTCACT 997
> Ahg492196 jgi|Araly1|492196|fgenesh2_kg.7__1629__AT4G26160.1
Length=801
Score = 207 bits (112), Expect = 1e-52
Identities = 255/322 (79%), Gaps = 17/322 (5%)
Strand=Plus/Plus
Query 428 AAATGGTGGGAGAGGAATGC---TCCAAACATGGTCGATATTCA-TTCTACTGAAG-AG- 481
||||||||||||||||| || ||||||||||| || ||| | || |||| || ||
Sbjct 257 AAATGGTGGGAGAGGAAAGCAGGGCCAAACATGGTTGACATT-ACCTCAACTG-AGCAGT 314
Query 482 TTCTTGAGCGCTTTAAGCGGTGCGGGTGAAAGATTAGTTATTGTAGAGTTTTATGGAACT 541
||| ||| ||| |||| | ||| || || ||||||||||| || || ||||||||||||
Sbjct 315 TTC-TGAACGCGTTAAAAGATGCAGGAGATAGATTAGTTATCGTGGATTTTTATGGAACT 373
Query 542 TGGTGTGCTTCTTGCAGAGCATTGTTCCCAAAGCTTTGCAAGACAGCGGTGGAACATCCC 601
||||||| ||||||| | ||| ||||||||||||||||||| |||||| ||||| |||
Sbjct 374 TGGTGTGGTTCTTGCCGTGCAATGTTCCCAAAGCTTTGCAAAACAGCGAAAGAACA-CCC 432
Query 602 -GATATAGTGTTCCTTAAAGTAAACTTTGATGAGAATAAACCGATGTGCAAGAGTTTGAA 660
|| || |||||||||||||||||||||||||||| || | | ||||| || || ||
Sbjct 433 TGAAATCTTGTTCCTTAAAGTAAACTTTGATGAGAACAAGTCTCTCTGCAAAAGCTTAAA 492
Query 661 CGTGAGAG-TGCTT-CCTTTTTTCCACTTTTACCGTGGAGCTGATGGTCA-GCTTGAGTC 717
||| | || || || || | |||||||| ||||| || |||||||| || | | || ||
Sbjct 493 CGTCA-AGGTG-TTACCATACTTCCACTTCTACCGCGGTGCTGATGGCCAAG-TCGAATC 549
Query 718 ATTCTCATGTTCTCTTGCTAAG 739
|||||||| |||||||| |||
Sbjct 550 CTTCTCATGCTCTCTTGCCAAG 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5