BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29680.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491794 jgi|Araly1|491794|fgenesh2_kg.7__1227__AT4G29680.1 2678 0.0
> Ahg491794 jgi|Araly1|491794|fgenesh2_kg.7__1227__AT4G29680.1
Length=1783
Score = 2678 bits (1450), Expect = 0.0
Identities = 1684/1795 (94%), Gaps = 24/1795 (1%)
Strand=Plus/Plus
Query 26 AGAAGAGAAGCAATGATCTCCGGCGACACATTATCAGCTAAAAAACCTAAATCAG-TTCC 84
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||
Sbjct 1 AGAAGAGAAGCAATGATCTCCGGCGACACATTATCAGCTAAACAACCCAAATC-GATTCC 59
Query 85 ACAAGAAGAAGACCAAGACCCACCAAGCCAATCAATCGCACTTCTCGACAATCACACAGA 144
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 ACCAGAAGAAGACCAAGACCCACCAAGCCAATCTATCGCACTTCTCGACAATCACACAGA 119
Query 145 TTCCTCCGGTTCTGATTCTTCCACTAGAAGCATCTCAAGCTGCTTCATCTTCACATCTCT 204
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 120 TTCCTCCGACTCTGATTCTTCCACTAGTAGTATCTCAAGCTGCTTCATCTTCACATCTCT 179
Query 205 ACTTCTCGTCACCTGCATCGCTCTATCCGCCGCTTCAGCTTTCGCCTTCCTCTTCTTCTC 264
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CCTTCTCGTCACCTGCATCGCTCTATCCGCCGCTTCAGCTTTCGCGTTCCTCTTCTTCTC 239
Query 265 TTCTCAAAAACCTGTCCTTTCCTTAAACCAAATCTCAAAGTCACCAGCTTTCGACAGATC 324
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 TTCCCAAAAACCTGTCCTTTCCTTAAACCAAGTCTCAAAGTCACCAGCTTTCGACAGATC 299
Query 325 CGTAGCTCGTCCGCTCAAGAAACTCGACAAGCCTGTTGTTCTTTTGATTTCATCAGATGG 384
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 CGTAGCTCGTCCACTCAAGAAACTCGACAAGCCTGTGGTTCTTTTGATTTCCTCAGATGG 359
Query 385 GTTTCGTTTCGGGTACCAGTTCAAGACCAAACTACCGAGCATCCACAGATTAATAGCCAA 444
|||||| |||||||| || |||||||||||| | |||||||| ||| | ||||| || ||
Sbjct 360 GTTTCGCTTCGGGTATCAATTCAAGACCAAATTGCCGAGCATTCACCGGTTAATCGCTAA 419
Query 445 CGGAACCGAAGCTGAGACTGGTCTAATCCCTGTTTTTCCGACACTAACTTTCCCTAACCA 504
||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 420 CGGGACCGAAGCTGAGACGGGTTTAATCCCTGTTTTTCCGACACTAACTTTCCCGAACCA 479
Query 505 TTACTCTATCGTCACAGGTCTATACCCAGCTTATCATGGAATCATCAATAACCA-CTTTG 563
|||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 480 TTACTCTATCGTCACAGGTCTATACCCAGCTTATCATGGAATCATCAACAA-CAGGTTCG 538
Query 564 TTGATCCAGAAACAGGGAACGTTTTCACAATGGCTAGTCATGAACCAGAGTGGTGGTTAG 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGATCCAGAAACAGGGAACGTTTTCACAATGGCTAGTCATGAACCAGAGTGGTGGTTAG 598
Query 624 GTGAGCCTTTGTGGGAGACAGTTGTGAACCAAGGACTTAAGGCTGCTACTTACTTCTGGC 683
||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 599 GTGAGCCATTGTGGGAGACAGTAGTAAATCAAGGGCTTAAGGCTGCTACTTACTTCTGGC 658
Query 684 CTGGCTCTGAGGTACACAAAGGCTCTTGGAATTGTCCTCAAGGTTTATGTCAAAACTACA 743
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 659 CTGGCTCTGAGGTACACAAAGGCTCTTGGAATTGTCCTGAAGGTTTATGTCAAAGCTACA 718
Query 744 ATGGCTCTGTTCCTTTTGATGATAGGGTTGATACTATTTTGAGCTATTTCGATTTGCCTA 803
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGGGTCAGTTCCTTTTGATGATAGGGTTGATACTATTTTGAGCTATTTCGATTTGCCTA 778
Query 804 GTAACGAAATCCCGAGTTTTATGACGCTTTACTTTGAAGATCCTGATCATCAAGGTCACC 863
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GTAGCGAAATCCCGAGTTTCATGACTCTTTACTTTGAAGATCCTGATCATCAAGGTCACC 838
Query 864 AAGTTGGCCCTGATGATCCTCAGATCACAGAAGCTGTAGTTAACATTGATCGGTTAATAG 923
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 AAGTTGGCCCTGATGATCCTCAGATCACGGAAGCTGTAGTTAACATTGATCGGTTAATAG 898
Query 924 GAAGATTAATTGATGGGTTAGAAAAACGAGGGATTTTTGAGGATGTGACTATGATTATGG 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAGATTAATTGATGGGTTAGAAAAACGAGGGATTTTTGAGGATGTGACTATGATTATGG 958
Query 984 TTGGTGATCATGGAATGGTTGGAACTTGCGATAAAAAATTGGTGGTTTTAGATGATTTAG 1043
||||||||||||||||||||||||| |||||||||||| |||| || || |||||||| |
Sbjct 959 TTGGTGATCATGGAATGGTTGGAACATGCGATAAAAAAGTGGTTGTGTTGGATGATTTGG 1018
Query 1044 CTCCTTGGATCAAAATCCCTAGCAGTTGGGTACAGTACTACACTCCGTTGCTAGCGATTC 1103
||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct 1019 CTCCTTGGATCAAAATCCCGAGTAGTTGGGTTCAGTATTACACTCCGTTGCTAGCGATTA 1078
Query 1104 AACCCCCTTCAGGGCACGATGCAGCGGATATAGTGGCTAAGATAAACGAAGGTTTGAGCT 1163
|||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct 1079 AACCCCCTTCAGGGTACGATGCAGCGGATATCGTGGCTAAGATAAACGAAGGGTTGAACT 1138
Query 1164 CGGGTAAAGTAGAGAATGGGAAGTACTTGAAGGTTTATCTCAAAGAGGATTTACCTAGCA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGGGTAAAGTAGAGAATGGGAAGTACTTGAAGGTTTATCTCAAAGAGGATTTACCTAGCA 1198
Query 1224 GGCTGCATTATGTAGACAGTGACCGCATCCCGCCTATTATAGGACTAGTCGATGAGGGCT 1283
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 GGCTGCATTATGTAGACAGTGACCGCATCCCGCCTATTATAGGACTAGTGGATGAGGGCT 1258
Query 1284 TCAAGGTGGAGCAGAAGAAAAGTAAAGCCAAGGAATGCGGTGGAGCTCACGGGTATGACA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAAGGTGGAGCAGAAGAAAAGTAAAGCCAAGGAATGCGGTGGAGCTCACGGGTATGACA 1318
Query 1344 ATGCCTTCTTTTCGATGAGAACTATATTCATCGGGCATGGTCCTATGTTCTCAAAAGGAA 1403
||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||
Sbjct 1319 ATGCCTTCTTTTCGATGAGAACTATATTCATTGGGCACGGGCCTATGTTCGCAAAAGGAA 1378
Query 1404 GGAAAGTGCCTTCTTTTGAGAATGTTCAGATATACAATGTGATCAGTTCGATTCTAGGAC 1463
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 GGAAAGTGCCTTCATTTGAGAATGTTCAGATATACAATGTTATCAGTTCGATTCTAGGAC 1438
Query 1464 TTAAGGCAGCACCAAACAATGGATCTGATGAGTTTTCTTCAAGCATTCTCTTGCCACGCG 1523
||||||| ||||||||||||||||| || |||||| || ||| | |||||||||||||||
Sbjct 1439 TTAAGGCTGCACCAAACAATGGATCCGACGAGTTTCCTGCAAACGTTCTCTTGCCACGCG 1498
Query 1524 TGTAGAAGAGTAGGGTAAGTTTATTCTTCTGTCAATAAAAGGCAGTCTAGACTCTTGAGA 1583
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1499 TGTAGCAGAGTAGGGTAAGTTCATTCTTCTGTCAATAAAAGGCAGTCTAGACTCTTAAGA 1558
Query 1584 CTTTGTTGTCAAAACATAAACGCGTTTGACCTCTTAGACGT-TTTATGCGTTTTGATCTG 1642
|||||||||||||||||||||| |||||| || |||||| | ||||||||||||||||||
Sbjct 1559 CTTTGTTGTCAAAACATAAACGAGTTTGATCTGTTAGAC-TATTTATGCGTTTTGATCTG 1617
Query 1643 ATTGCTGTTTTTGTATGATTTCATCACGAAGTTGCACTAAAACGTATTGTAGTATTTCGG 1702
| |||||||| ||||||||||||||| | || | || |||||| |||||||| ||
Sbjct 1618 AATGCTGTTTCTGTATGATTTCATCA--AC-TT--A--AA--CGTATTCTAGTATTTTGG 1668
Query 1703 AGTATG-AA-----A---CTTGTCTTGACATTTGATGCCAAGATTGGAAGCTTTGTACTT 1753
|||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1669 AGTATGTAATCGTTAAAACTTGTCTTGACATTTGATGCGAAGATTGGAAGCTTTGTACTT 1728
Query 1754 TCCTTCAAAGAAACAATGCTTTGAATTGGATACTCGATTCTTTGCCAATAATTGG 1808
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 TCCTCCAAAGAAACAATGCTTTGAATTGGATACTCGATTCTTTGCCAATAATTGG 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5