BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29690.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491793 jgi|Araly1|491793|fgenesh2_kg.7__1226__AT4G29690.1 2198 0.0
Ahg491792 jgi|Araly1|491792|fgenesh2_kg.7__1225__AT4G29700.1 979 0.0
Ahg945037 jgi|Araly1|945037|scaffold_701266.1 935 0.0
> Ahg491793 jgi|Araly1|491793|fgenesh2_kg.7__1226__AT4G29690.1
Length=1547
Score = 2198 bits (1190), Expect = 0.0
Identities = 1445/1566 (92%), Gaps = 26/1566 (2%)
Strand=Plus/Plus
Query 16 TCTCTCTCAATGACGAAAAGTAAACCTGGCCGGTCCGGTTTTTCCGGTTACA-TATTGTA 74
|||||||| ||||| ||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 1 TCTCTCTCGATGACTAAAAGTAAACCTGGCCGGTCCTGTTTTTCCGGTTACACCA-TGTA 59
Query 75 CAAGTTATCTCTAACCGTTCTCATTGTCCTC-TCCGTAGCCGTCACTGCCAATGGTTCGG 133
|||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||
Sbjct 60 CAAGTTATCTCTAACCGTTCTCATCGTCCTCGT-CGTAGCCGTCACTGCCGATGGTTCGG 118
Query 134 ACTCCCCATCT-TCCTACGTC-AGGAGACCCCAACCCCCCAAGAAGCTCAACAAACCGGT 191
|||| | || | ||| ||| | ||||||||||| ||| ||||||| ||||||||||||||
Sbjct 119 ACTCTCAAT-TGTCCAACG-CTAGGAGACCCCAGCCCTCCAAGAAACTCAACAAACCGGT 176
Query 192 GGTTCTGTTAATTTCCTGCGATGGTTTCCGGTTCGGTTACCAATTCAAGACAGAGACACC 251
|||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 177 GGTTCTATTGATTTCCTGCGACGGTTTCCGGTTCGGTTACCAATTCAAAACAGAGACACC 236
Query 252 AAACATCGATCTGCTCATATCCAGAGGTACCGAAGCTAAGACCGGTTTAATTCCGGTTTT 311
||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 237 AAACATCGACCTGCTTATATCCAGAGGAACCGAAGCCAAGACCGGTTTAATTCCGGTTTT 296
Query 312 CCCCACCATGACGTTCCCAAACCATTACTCAATCGCTACCGGACTCTATCCGGCTTCCCA 371
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 297 CCCCACCATGACGTTCCCAAACCATTACTCAATCGCCACCGGACTTTACCCGGCTTCCCA 356
Query 372 CGGCATAATCATGAACAAATTTACCGATCCGGTAAGTGGGGAACTATTCAACAGGAACCT 431
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 CGGTATAATCATGAACAAATTTACCGATCCGGTAAGCGGGGAACTATTCAACAGGAACCT 416
Query 432 AAACCCTAAATGGTGGTTAGGTGAGCCGTTGTGGGTGACCGCAGTGAACCAAGGGCTCAT 491
||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct 417 AAACCCTAAATGGTGGTTAGGTGAGCCATTGTGGGTGACGGCGGTGAACCAGGGGCTCAA 476
Query 492 GGCTGCGACTTACTTTTGGCCAGGCGCTGACGTCCACAAAGGGTCTTGGAACTGCCCAAA 551
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 GGCTGCGACTTACTTTTGGCCAGGCGCTGACGTCCACAAAGGCTCTTGGAACTGCCCAAA 536
Query 552 AGGCTTTTGTAAAGCTCCTTACAATGTTTCAGTTCCTTTAGAAGAAAGAGTCGATACGAT 611
||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 537 AGGATTTTGCAAAGCTCCTTACAATGTTTCGGTTCCTCTAGAAGAAAGAGTCGATACGAT 596
Query 612 CTTGAACTATTTCGATCTTCCAGAGAGAGAAATCCCTGATTTCATGGCTCTGTATTTCGA 671
||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 597 TTTGAACTATTTCGATCTTCCAGAAAGCGAAATCCCCGATTTCATGGCTCTGTATTTCGA 656
Query 672 TGAACCGGACATACAAGGCCATGAGTACGGCCCTGATGATCCTCGCGTCACGGAAGCCGT 731
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 657 TGAACCGGACATACAAGGCCATGAGTACGGCCCTGATGATCCTCGCGTCACAGAAGCGGT 716
Query 732 CTCAAAGGTCGATAAAATGATCGGTAGGATCATCATG-GGATTGGAGAAGAGGAAGGTTT 790
||||||||||||||| ||||||||||||||||| | | || ||| ||||||| |||||||
Sbjct 717 CTCAAAGGTCGATAATATGATCGGTAGGATCAT-ACGAGGGTTGAAGAAGAGAAAGGTTT 775
Query 791 TTAGTGATGTTCATGTGATATTGCTTGGTGATCACGGAATGGTTACTAACTGTGACAAGA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTAGTGATGTTCATGTGATATTGCTTGGTGATCACGGAATGGTTACTAACTGTGACAAGA 835
Query 851 AAGTGATTTACATTGATGATTTAGCCGATTGGATCAAGATACCCGCGGATTGGATCCAAG 910
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 836 AAGTGATTTACATTGATGATTTAGCGGATTGGATCAAGATACCCGCGGATTGGATCCAAG 895
Query 911 ATTATAGTCCGGTGCTAGCGATGAATCCGCGCTGGGGCAAAGATGTCAAGAATCCAGGAC 970
||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 896 ATTATAGCCCCGTGCTAGCGATGAATCCGCGGTGGGGCAAAGATGTCAAGAATCCAGG-C 954
Query 971 -AGAAGAATGCAGAACTCGTAAG-GAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAGC 1028
|||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 955 GAGAAGAATGCGGAACTTGTG-GCGAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAGC 1013
Query 1029 CAACGGAGAGTTTTTGCAGGTTTACTTGAAGGAGAATTTACCGCAAAGGCTGCATTATTC 1088
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 CAACGGAGAGTTTTTACAGGTATACTTGAAGGAGAATTTACCGCAAAGGCTACATTATTC 1073
Query 1089 CGATAGTTCTCGGATTCCACCGATCATCGGAATGGTGGGAGAAGGTCTAATGGTTAAACA 1148
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CGATAGCTCTCGGATTCCACCGATCATCGGAATGGTGGGAGAAGGTCTAATGGTTAAACA 1133
Query 1149 GAACAGAACATACGTTCAAGAATGTTCTGGAACTCATGGATACGATAATATGTTCTTTTC 1208
|||||||||| |||||||||||||||| |||| |||||||||||| || |||||||||||
Sbjct 1134 GAACAGAACAAACGTTCAAGAATGTTCCGGAAATCATGGATACGACAACATGTTCTTTTC 1193
Query 1209 TATGAGATCAATCTTTGTTGGATATGGTCCAAGGTTTAGGAGAGGAATAAAAGTGCCATC 1268
|||||||| |||||| ||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 1194 CATGAGATCCATCTTTATTGGATATGGTCCAAGGTTTAGGAGTGGAAGGAAAGTGCCGTC 1253
Query 1269 GTTCGAGAATGTTCAGGTCTATAATGCTGTTGCAGAGATTCTCGGACTCCGACCAGCTCC 1328
||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1254 GTTTGAAAATGTTCAGGTCTATAATGCTGTTACAGAGATTCTCGGACTCCGACCAGCTCC 1313
Query 1329 GAACAACGGTTCTTCTTTGTTTACTCGTAGTCTTCTCTTGCCATTTGGAGAAACATCACA 1388
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1314 GAACAACGGGTCTTCTTTGTTTACTCGTAGCCTTCTCTTGCCCTTTGGAGAAACATCGCA 1373
Query 1389 AGTAGAATGAAGCTAAACAATAATCTAAGTTTGTTGCAGTATGGCGTTTACTTTCGGATG 1448
||||||||||||||||| || || ||||||||||| ||||||||| |||| |||||||||
Sbjct 1374 AGTAGAATGAAGCTAAATAAAAACCTAAGTTTGTTTCAGTATGGCTTTTAGTTTCGGATG 1433
Query 1449 CATTTTGAAGTTTTAGGCTTTTAGCTCTAAATCAATGGTGTATCAACAAATAATATGTTA 1508
|||||| || | | ||| ||||||||||||||| | ||||||| ||||| |||||
Sbjct 1434 CATTTT-AA-T----G--TTTCAGCTCTAAATCAATG-T--ATCAACACATAATGTGTTA 1482
Query 1509 TGAAAATAATTTTGTTAGTATAAGAATAATGTGCAAGATACTTAAATAGACCTAAATTAT 1568
|| || |||||||| |||||||||| ||| || | | | |||||||||||||||||||
Sbjct 1483 TGGAA-TAATTTTGCTAGTATAAGACTAAAGTTTTACAAAGTTAAATAGACCTAAATTAT 1541
Query 1569 TTGAAT 1574
||||||
Sbjct 1542 TTGAAT 1547
> Ahg491792 jgi|Araly1|491792|fgenesh2_kg.7__1225__AT4G29700.1
Length=1435
Score = 979 bits (530), Expect = 0.0
Identities = 1016/1244 (82%), Gaps = 59/1244 (5%)
Strand=Plus/Plus
Query 171 CAAGAAGCTCAACAAACCGGTGGTTCTGTTAATTTCCTGCGATGGTTTCCGGTTCGGTTA 230
||||||||| ||||||||||||||| | | ||||| || || ||||||||||| |||||
Sbjct 153 CAAGAAGCTTAACAAACCGGTGGTTTTAATGATTTCTTGTGACGGTTTCCGGTTTGGTTA 212
Query 231 CCAATTCAAGACAGAGACACCAAACATCGATCTGCTCATATCCAGAGGTACCGAAGCTAA 290
|||||| || || || |||||||||||||| || ||||||||| |||| ||||| || ||
Sbjct 213 CCAATTTAAAACGGAAACACCAAACATCGACCTTCTCATATCCGGAGGAACCGAGGCCAA 272
Query 291 GAC-CGGTTTAATTCCGGTTTTCCCCACCATGACGTTCCCAAACCATTACTCAATCGCTA 349
|| ||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 273 -ACACGGTTTAATCCCGGTTTTCCCCACCATGACATTCCCAAACCACTACTCTATCGCAA 331
Query 350 CCGGACTCTATCCGGCTTCCCACGGCATAATCATGAACAAATTTACCGATCCGG-TAAGT 408
|||||||||| ||||||| |||||| |||||||||||||| ||||||||||||| || |
Sbjct 332 CCGGACTCTACCCGGCTTACCACGGTATAATCATGAACAAGTTTACCGATCCGGTTACG- 390
Query 409 GGGGAACTATTCAAC--AGGAACCTA-AACCCTAAATGGTGGTTAGGTGAGCCGTTGTGG 465
|| || | |||||| ||| | || || || ||||||||||||||||||||| |||||
Sbjct 391 GGAGAGGTGTTCAACAAAGG--CTTACAA-CCGAAATGGTGGTTAGGTGAGCCGCTGTGG 447
Query 466 GTGACCGCAGTGAACCAAGGGCTCATGGCTGCGACTTACTTTTGGCCAGGCGCTGACG-T 524
|| ||||||| |||||||| |||| ||||| ||||||||||||||||||| |||| | |
Sbjct 448 GTAACCGCAGCAAACCAAGGTCTCAAGGCTGTGACTTACTTTTGGCCAGGCTCTGAAGTT 507
Query 525 CCACAAAGGGTCTTGGAAC-TGCCCAAAAGGCTTTTGTAAAGCTCCTTACAATGTTTCAG 583
|| |||||| |||||| || ||||| |||| | |||| | | || |||| |||| |
Sbjct 508 CC-CAAAGGTTCTTGG-ACTTGCCCTGAAGGATATTGT---CCACGTTTCAATCTTTC-G 561
Query 584 -TTCCTTTAGAAGAAAGAGTCGATACGATCTTGAACTATTTCGATCTTCCAGAGAGA-GA 641
|||||||||||||||| || ||| || |||||| | |||| |||| || ||| || ||
Sbjct 562 ATTCCTTTAGAAGAAAGGGTTGATTCGGTCTTGAGCCATTTTGATCACCCTGAG-GACGA 620
Query 642 AATCCCTGATTT-CATGGCT-CTGTATTTCGATGAACCGGA-C-ATACAAGGCCATGAGT 697
||| |||||||| | | | | |||| |||||||| | || | || | || ||| | |
Sbjct 621 AATTCCTGATTTGC-T-GATGTTGTACTTCGATGAGTCAGACCAAT-C-GGGTCATAACT 676
Query 698 ACGGCCCTGATGATCCTCGCGTCACGGA-AGCCGTCTCAAAGGTCGATAAAATGATCGGT 756
| || ||||||||| |||| || || || || || || | ||| ||||| ||||| |||
Sbjct 677 ATGGTCCTGATGATGCTCGGGTTAC-GACTGCGGTTTCGAGGGTAGATAACATGATTGGT 735
Query 757 AGGATCAT-CATGGGATTGGAGAAGAGGAAGGT-TTTTAGTGATGTTCATGTGATATTGC 814
||| | || | ||| || |||||||| || | ||| | ||| ||||||||||||||||
Sbjct 736 AGGGTGATAAACGGGCTT-AAGAAGAGGTAGATCTTTGA-TGAGGTTCATGTGATATTGC 793
Query 815 TTGGTGATCACGGAATGGTTACTAACTGTGAC---AA-GA-AA-GTGATTTACATTGATG 868
||||||||||||||||||| || |||||||| || || || | ||||||||||||||
Sbjct 794 TTGGTGATCACGGAATGGTGACCAACTGTGAATGTAACGAGAAAGCGATTTACATTGATG 853
Query 869 ATTTAGCCGATTGGATCAAGATACCCGCGGATTGGATCCAAGATTATAGTCCGGTGCTAG 928
| ||||| ||||||||||||||||| |||| ||||||||| | ||| || || || ||||
Sbjct 854 ACTTAGCGGATTGGATCAAGATACCTGCGGCTTGGATCCAGGCTTACAGCCCAGTTCTAG 913
Query 929 CGATGAATCCGC-GCTGGGGCAAAGATGTCAAGAATCCAGGAC-AGAAGAATGCAGAACT 986
| || ||||| | | ||||||||| ||||| |||||| || || | ||||| || ||| |
Sbjct 914 CAATTAATCCTCAG-TGGGGCAAAAATGTCGAGAATCAAG-ACGAAAAGAACGCGGAAGT 971
Query 987 CGTAAGG-AA-GATGAACGAAGCTTTGAGCTCAGGGAAAGTAGCCAACGGAGAGTTTTTG 1044
|| || || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 972 AGT--GGCAAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAAAAAACGGAGAGTTTTTG 1029
Query 1045 CAGGTTTACTTGAAGGAGAATTTACCGCAAAGGCTGCATTATTCCGATAGTTCTCGGATT 1104
||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||
Sbjct 1030 AAGGTTTACTTGAAGGAGAAGTTACCGGAAAGACTGCATTATTCCGAGAGTTCTCGGATT 1089
Query 1105 CCACCGATCATCGGAATGGTGGGAGAAGGTCTAATGGTTAAACAGAACAGAACATACGTT 1164
||||||||||| |||||||| |||||||||||||| || | ||||||||||||| | | |
Sbjct 1090 CCACCGATCATTGGAATGGTCGGAGAAGGTCTAATTGTCAGACAGAACAGAACAAATGCT 1149
Query 1165 CAAGAATGTTCTGGA-ACTCATGGATACGATAAT-ATGTTCTTTTCTATGAGATCAATCT 1222
|||| || | |||| || ||||| ||||| || | | |||| || ||||| || || |
Sbjct 1150 CAAGTTTGCTATGGAGAC-CATGGTTACGACAACGA-GCTCTTCTCGATGAGGTCTATTT 1207
Query 1223 TTGTTGGATATGGTCCAAGGTTTAGGAGAGG-AATAAAAGTGCCATCGTTCGAGAATGTT 1281
|||| ||| ||||| | |||||||| ||||| || |||||||||||| |||||||||||
Sbjct 1208 TTGTCGGACATGGTTCTAGGTTTAGTAGAGGGAA-AAAAGTGCCATCCTTCGAGAATGTG 1266
Query 1282 CAGGTCTATAATG-CTGTTGCAGAGATTCTCGGACTCCGACCAGCTCCGAACAACGGTTC 1340
||| ||||||| | | ||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 1267 CAGATCTATAACGTC-GTTGCAGAGCTTCTTGGACTCCGACCAGCTCCGAACAATGGTTC 1325
Query 1341 TTCTTTGTTTACTCGTAGTC-TTCTCTTGCCATTTGGAGAAACA 1383
||||||||| |||| || | |||||||||| ||||||| ||||
Sbjct 1326 TTCTTTGTTCCCTCGGAG-CATTCTCTTGCCTTTTGGAGCAACA 1368
> Ahg945037 jgi|Araly1|945037|scaffold_701266.1
Length=1427
Score = 935 bits (506), Expect = 0.0
Identities = 1013/1249 (81%), Gaps = 69/1249 (6%)
Strand=Plus/Plus
Query 171 CAAGAAGCTCAACAAACCGGTGGTTCTGTTAATTTCCTGCGATGGTTTCCGGTTCGGTTA 230
||||||||||||||||||||||||| | | ||||||||||| |||||||| ||||||||
Sbjct 168 CAAGAAGCTCAACAAACCGGTGGTTTTAATGATTTCCTGCGACGGTTTCCGTTTCGGTTA 227
Query 231 CCAATTCAAGACAGAGACACCAAACATCGATCTGCTCATATCCAGAGGTACCGAAGCTAA 290
|||||| || || || |||||||| ||||| || ||||||||| |||| ||||| || ||
Sbjct 228 CCAATTTAAAACCGACACACCAAATATCGACCTTCTCATATCCGGAGGAACCGAGGCCAA 287
Query 291 GACCGGTTTAATTCCGGTTTTCCCCACCATGACGTTCCCAAACCATTACTCAATCGCTAC 350
| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 288 AAGCGGTTTAATCCCGGTTTTCCCCACCATGACGTTCCCAAACCACTACTCTATCGCCAC 347
Query 351 CGGACTCTATCCGGCTTCCCACGGCATAATCATGAACAAATTTACCGATCCGGTAAGTGG 410
||||||||| ||||||| |||||| ||||||||||||| |||||||||||||| | |||
Sbjct 348 CGGACTCTACCCGGCTTACCACGGTATAATCATGAACACGTTTACCGATCCGGTTACTGG 407
Query 411 GGAACTATTCAACAGGAAC-CT-A-AACCCTAAATGGTGGTTAGGTGAGCCGTTGTGGGT 467
|| | ||||||| || || | |||| |||||||||||||||||||| |||||||
Sbjct 408 AGATGTGTTCAACA--AAGGCTTACAACCA-AAATGGTGGTTAGGTGAGCCAATGTGGGT 464
Query 468 GACCGCAGTGAACCAAGGGCTCATGGCTGCGACTTACTTTTGGCCAGGCGCTGACGT-CC 526
|||||||| |||||||| |||| ||||| ||||||||||||||||||| |||| || ||
Sbjct 465 AACCGCAGTAAACCAAGGTCTCAAGGCTGTGACTTACTTTTGGCCAGGCTCTGAAGTTCC 524
Query 527 ACAAAGGGTCTTGGAACT-GCCCAAAAGGCTTTTGTAAA-GCTCCTTACAATGTTTCAGT 584
|||||| ||||||| || |||| ||||| | ||| | | | || |||| ||| ||
Sbjct 525 -CAAAGGTTCTTGGA-CTTGCCCTAAAGGATACTGTCCACG-T--TT-CAATAATTCGGT 578
Query 585 TCCTTTAGAAGAAAGAGTCGATACGATCTTGAACTATTTCGATCTTCCAGAGAGA-GAAA 643
||||||||||||||| |||||| || |||||| | ||||||||| || ||| || ||||
Sbjct 579 TCCTTTAGAAGAAAGGGTCGATTCGGTCTTGAGCCATTTCGATCAGCCTGAG-GACGAAA 637
Query 644 TCCCTGATTT-CATGGCTCTG-TATTTCGATGAACCGGACATA-CAAGGCCATGAGTACG 700
| |||||||| | || | | |||||| |||| ||||||| | || || ||| | || |
Sbjct 638 TTCCTGATTTGC-TGA-TGTTATATTTCAATGAGCCGGACAAAGCA-GGTCATAAATATG 694
Query 701 GCCCTGATGATCCTCG-CGTCACGGAA-GCCGTCTCAAAGG-TCGATAAAATGATCGGTA 757
| ||||| |||||||| | | || || || || || | || | ||||||||||| ||||
Sbjct 695 GTCCTGACGATCCTCGGCTT-ACA-AATGCGGTTTCGA-GGATTGATAAAATGATTGGTA 751
Query 758 GGATCATCATGGGA-TTGGAGAAGAG-GAAGGTTTTT-AGTGATGTTCATGTGATATTGC 814
|| | || | ||| || ||||||| || | | ||| | ||| || ||||||||| |||
Sbjct 752 GGGTGATAAAGGGGCTTA-AGAAGAGAGA-GATCTTTGA-TGAGGTGCATGTGATACTGC 808
Query 815 TTGGTGATCACGGAATGGTTACTAACTGTGAC---AA-GA-AA-GTGATTTACATTGATG 868
||||||||||||||||||| || |||||||| || || || | |||||| |||||||
Sbjct 809 TTGGTGATCACGGAATGGTGACCAACTGTGAATGTAACGAGAAAGCGATTTATATTGATG 868
Query 869 ATTTAGCCGATTGGATCAAGATACCCGCGGATTGGATCCAAGATTATAGTCCGGTGCTAG 928
| || || ||||||||||||||||| |||| ||||||||||| ||| || || |||||||
Sbjct 869 ACTTGGCGGATTGGATCAAGATACCTGCGGCTTGGATCCAAGCTTACAGCCCAGTGCTAG 928
Query 929 CGATGAATCCGCGCTGGGGCAAAGATGTCAAGAATCCA-G-GACAGAAGAATGC-AGAAC 985
| || ||||| | ||||||||| ||||| |||||| | | || | ||||| || | ||
Sbjct 929 CAATTAATCCACAATGGGGCAAAAATGTCGAGAATCAAAGCGA-A-AAGAACGCCA-AAG 985
Query 986 TCGTAAGG-AA-GATGAACGAAGCTTTGAGCTCAGGGAAAGTAGCCAACGGAGAGTTT-T 1042
|||| || || ||||||||||||||||||||||||| ||||| |||||||| ||| |
Sbjct 986 TCGT--GGCAAAGATGAACGAAGCTTTGAGCTCAGGGGAAGTAAAAAACGGAGA-TTTAT 1042
Query 1043 TGCAGGTTTACTTGAAGGAGAATTTACCGCAAAGGCTGCATTATTCCGATAGTTCTCGGA 1102
|| ||||||||||||||||||| |||||| |||| |||||||||||||| || | |||||
Sbjct 1043 TGAAGGTTTACTTGAAGGAGAAGTTACCGGAAAGACTGCATTATTCCGAGAGCTATCGGA 1102
Query 1103 TTCCACCGATCATCGGAATGGTGGGAGAAGGTCTAATGGTTAAACAGAACAGAACATACG 1162
||||||| ||||| ||||| || ||||||||||||||||| | |||||| |||||| |
Sbjct 1103 TTCCACCAATCATAGGAATAGTCGGAGAAGGTCTAATGGTCAGACAGAATAGAACAAAT- 1161
Query 1163 T-TCAAGAATGTT-CTGGA-ACTCATGGATACGATAATATGTTCTTTTCTATGAG-ATCA 1218
| |||| |||| | | ||| || ||||| | ||| || | |||||| || ||||| | |
Sbjct 1162 TCTCAAAAATGCTAC-GGAGAC-CATGGTTTCGACAACAAGTTCTTCTCAATGAGGA-CT 1218
Query 1219 ATCTTTGTTGGATATGGTCCAAGGTTTAGGAGAGGAATA-AAAGTGCCATCGTTCGAGAA 1277
|| ||||| ||| ||||| | |||||||||||||||| | |||||||||||||| |||||
Sbjct 1219 ATTTTTGTCGGACATGGTTCTAGGTTTAGGAGAGGAA-AGAAAGTGCCATCGTTTGAGAA 1277
Query 1278 TGTTCAGGTCTATAATG-CTGTTGCAGAGATTCTCGGACTCCGACCAGCTCCGAACAACG 1336
||| || |||||| | | |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1278 TGTGGAGATCTATAGCGTC-GTTGCAGATATTCTTGGACTCCGACCAGCTCCGAACAATG 1336
Query 1337 GTTCTTCTTTGTTTACTCGTAGTC-TTCTCTTGCCATTT-GGAGAAACA 1383
||||||||||||| |||| || | |||||||||| || |||| ||||
Sbjct 1337 GTTCTTCTTTGTTCCCTCGGAG-CATTCTCTTGCC-TTCCGGAGCAACA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5