BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29700.1
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491792 jgi|Araly1|491792|fgenesh2_kg.7__1225__AT4G29700.1 2130 0.0
Ahg945037 jgi|Araly1|945037|scaffold_701266.1 1879 0.0
Ahg491793 jgi|Araly1|491793|fgenesh2_kg.7__1226__AT4G29690.1 953 0.0
> Ahg491792 jgi|Araly1|491792|fgenesh2_kg.7__1225__AT4G29700.1
Length=1435
Score = 2130 bits (1153), Expect = 0.0
Identities = 1313/1390 (94%), Gaps = 11/1390 (1%)
Strand=Plus/Plus
Query 15 ATGGCTAAAACCAAAAATGTTATTTCTTTCAAACTTTCTCTCATCTTCCTTCTTAATATT 74
|||||||||||||||| | || ||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGGCTAAAACCAAAACTTTTCTTTCTTTCAAACTTTCTCTCA--TT-CTTCTTAATATT 57
Query 75 TTCATCGTAGCCACCATCGCAGCCGCAGCGGCCGTTAACGCCGGTACCAAAGGTTTGGAT 134
|||||| |||||| ||| ||||||||||| || | ||||||| ||||||| || || |||
Sbjct 58 TTCATCATAGCCATCATAGCAGCCGCAGCCGCAGCTAACGCCCGTACCAATGGGTTAGAT 117
Query 135 TCTCGGCCGTCCAAAACCA-GGCGTCCCTGGCCTTTCAAGAAGCTCAACAAACCGGTGGT 193
|||| | ||||||||| || ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 118 TCTCCGTCGTCCAAAA-CATGGCGTCCTTGGCCTTTCAAGAAGCTTAACAAACCGGTGGT 176
Query 194 TTTAATGATCTCTTGCGACGGTTTCCGGTTTGGTTACCAATTTAAAACGGACACACCAAA 253
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 TTTAATGATTTCTTGTGACGGTTTCCGGTTTGGTTACCAATTTAAAACGGAAACACCAAA 236
Query 254 CATCGACCTTCTCATATCCGGAGGAACTGAGGCCAAACACGGTTTAATCCCGGTTTTCCC 313
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 CATCGACCTTCTCATATCCGGAGGAACCGAGGCCAAACACGGTTTAATCCCGGTTTTCCC 296
Query 314 CACCATGACATTCCCAAACCACTACTCTATCGCAACCGGACTCTACCCGGCTTACCACGG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CACCATGACATTCCCAAACCACTACTCTATCGCAACCGGACTCTACCCGGCTTACCACGG 356
Query 374 TATAATCATGAACAAGTTTACCGATCCGGTTACGGGAGAGGTGTTCAACAAAGGCTTACA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TATAATCATGAACAAGTTTACCGATCCGGTTACGGGAGAGGTGTTCAACAAAGGCTTACA 416
Query 434 ACCAAAATGGTGGTTAGGTGAGCCGCTGTGGGTAACCGCAGTAAACCAAGGTCTCAAGGC 493
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 ACCGAAATGGTGGTTAGGTGAGCCGCTGTGGGTAACCGCAGCAAACCAAGGTCTCAAGGC 476
Query 494 TGTGACCTACTTTTGGCCAGGCTCTGAAGTTCTAAAAAGTTCTTGGACTTGCCCTGAAGG 553
|||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 477 TGTGACTTACTTTTGGCCAGGCTCTGAAGTTCCCAAAGGTTCTTGGACTTGCCCTGAAGG 536
Query 554 ATATTGTCCACATTTCAATCTTTC-AGTTCCTTTAGAAGAAAGGGTTGATTCGGTCTTGA 612
||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 537 ATATTGTCCACGTTTCAATCTTTCGA-TTCCTTTAGAAGAAAGGGTTGATTCGGTCTTGA 595
Query 613 GCCATTTTGATCACCTTGAGGACGAAGTTCCTGATTTACTGATGTTGTATTTCGATGAGC 672
||||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 596 GCCATTTTGATCACCCTGAGGACGAAATTCCTGATTTGCTGATGTTGTACTTCGATGAGT 655
Query 673 CAGACCAATCGGGTCATAACTATGGTCCTGATGATCCTCGGGTTACGACTGCTGTTTCTA 732
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 656 CAGACCAATCGGGTCATAACTATGGTCCTGATGATGCTCGGGTTACGACTGCGGTTTCGA 715
Query 733 GGGTTGATAAAATGATTGGTAGGGTGATAAAGGGGCTGAAGCAGAGGGAGATCTTTGATG 792
|||| ||||| |||||||||||||||||||| ||||| ||| ||||| ||||||||||||
Sbjct 716 GGGTAGATAACATGATTGGTAGGGTGATAAACGGGCTTAAGAAGAGGTAGATCTTTGATG 775
Query 793 AGGTTCATGTGATATTGCTTGGTGATCACGGAATGGTGACCAACTGTGAGTGTAACGAGA 852
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 776 AGGTTCATGTGATATTGCTTGGTGATCACGGAATGGTGACCAACTGTGAATGTAACGAGA 835
Query 853 AAGCGATTTACATTGATGACTTAGCGGATTGGATCAAGATACCCGCGGCTTGGATCCAGG 912
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 AAGCGATTTACATTGATGACTTAGCGGATTGGATCAAGATACCTGCGGCTTGGATCCAGG 895
Query 913 CTTACAGCCCAGTGCTAGCAATCAATCCTCAGTGGGGGAAAGATGTCGAGAATCAA-AGC 971
||||||||||||| |||||||| |||||||||||||| ||| |||||||||||||| | |
Sbjct 896 CTTACAGCCCAGTTCTAGCAATTAATCCTCAGTGGGGCAAAAATGTCGAGAATCAAGA-C 954
Query 972 GAAAAGAACGCGGAAGTCGTGGCGAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAAAA 1031
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 GAAAAGAACGCGGAAGTAGTGGCAAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAAAA 1014
Query 1032 AACGGAGAGTTTTTGAAAGTTTACTTGAAGGAGAAGCTACCAGAGAGACTGCATTTTTCA 1091
||||||||||||||||| |||||||||||||||||| |||| || |||||||||| |||
Sbjct 1015 AACGGAGAGTTTTTGAAGGTTTACTTGAAGGAGAAGTTACCGGAAAGACTGCATTATTCC 1074
Query 1092 GAGAGTTATCGGATTCCACCGATCATAGGAATTGTCGGAGAAGGTCTAATGGTCAGACAG 1151
||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1075 GAGAGTTCTCGGATTCCACCGATCATTGGAATGGTCGGAGAAGGTCTAATTGTCAGACAG 1134
Query 1152 AACAGAACAAATGCTCAAGTTTGCTATGGAGACCATGGTTATGACAACGAGCTCTTCTCG 1211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1135 AACAGAACAAATGCTCAAGTTTGCTATGGAGACCATGGTTACGACAACGAGCTCTTCTCG 1194
Query 1212 ATGAGGACTATTTTTGTCGGACATGGTTCTAGGTTTAGTAGAGGaaaaaaaGTGCCATCA 1271
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1195 ATGAGGTCTATTTTTGTCGGACATGGTTCTAGGTTTAGTAGAGGGAAAAAAGTGCCATCC 1254
Query 1272 TTCGAGAATGTGCAGATCTATAACGTCGTTGCAGAGCTTCTTGGACTCCGACCAGCTCCG 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTCGAGAATGTGCAGATCTATAACGTCGTTGCAGAGCTTCTTGGACTCCGACCAGCTCCG 1314
Query 1332 AACAATGGTTCTTCTTTGTTCCCTCGGAGCATTCTCTTGCCTTCTGGAGCAACAAGGGA- 1390
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1315 AACAATGGTTCTTCTTTGTTCCCTCGGAGCATTCTCTTGCCTTTTGGAGCAACAGGGGAG 1374
Query 1391 AGTAAAATGA 1400
| ||||||||
Sbjct 1375 A-TAAAATGA 1383
> Ahg945037 jgi|Araly1|945037|scaffold_701266.1
Length=1427
Score = 1879 bits (1017), Expect = 0.0
Identities = 1295/1426 (91%), Gaps = 31/1426 (2%)
Strand=Plus/Plus
Query 9 TTTCAAATGGCT-AAAACCAAAAATGTT-ATTTCTTTCAAACTTTCTCTCATCTTCCTTC 66
|||| ||||| | ||||||||||||||| | ||| |||||||||||||| ||||||
Sbjct 16 TTTCCAATGG-TGAAAACCAAAAATGTTCA-GTCTCCCAAACTTTCTCTCA---TCCTTC 70
Query 67 TTAATATTTTCATCGTAGCCACCATCGCAGCCGCAGCGGCCGTTAACGCCGGTACCAAAG 126
| ||||| |||||| ||||||||||||||| |||| ||| |||||||||||||| |
Sbjct 71 TAAATATCTTCATCATAGCCACCATCGCAGTCGCA---GCC---AACGCCGGTACCAATG 124
Query 127 GTTTGGA-TTCTCGGCCGTCCAAAACCAGGCGTCCCTGGCCTTTCAAGAAGCTCAACAAA 185
||| || ||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 125 ATTT-GAGTTCTCGGTCATCCAAAACCAGGCGTCCCTGGCCCTTCAAGAAGCTCAACAAA 183
Query 186 CCGGTGGTTTTAATGATCTCTTGCGACGGTTTCCGGTTT-GGTTACCAATTTAAAACGGA 244
||||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| ||
Sbjct 184 CCGGTGGTTTTAATGATTTCCTGCGACGGTTTCC-GTTTCGGTTACCAATTTAAAACCGA 242
Query 245 CACACCAAACATCGACCTTCTCATATCCGGAGGAACTGAGGCCAAACA-CGGTTTAATCC 303
||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 243 CACACCAAATATCGACCTTCTCATATCCGGAGGAACCGAGGCCAAA-AGCGGTTTAATCC 301
Query 304 CGGTTTTCCCCACCATGACATTCCCAAACCACTACTCTATCGCAACCGGACTCTACCCGG 363
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 302 CGGTTTTCCCCACCATGACGTTCCCAAACCACTACTCTATCGCCACCGGACTCTACCCGG 361
Query 364 CTTACCACGGTATAATCATGAACAAGTTTACCGATCCGGTTACGGGAGAGGTGTTCAACA 423
|||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 362 CTTACCACGGTATAATCATGAACACGTTTACCGATCCGGTTACTGGAGATGTGTTCAACA 421
Query 424 AAGGCTTACAACCAAAATGGTGGTTAGGTGAGCCGCTGTGGGTAACCGCAGTAAACCAAG 483
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 422 AAGGCTTACAACCAAAATGGTGGTTAGGTGAGCCAATGTGGGTAACCGCAGTAAACCAAG 481
Query 484 GTCTCAAGGCTGTGACCTACTTTTGGCCAGGCTCTGAAGTTCTAAAAAGTTCTTGGACTT 543
|||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 482 GTCTCAAGGCTGTGACTTACTTTTGGCCAGGCTCTGAAGTTCCCAAAGGTTCTTGGACTT 541
Query 544 GCCCTGAAGGATATTGTCCACATTTCAATCTTTCAGTTCCTTTAGAAGAAAGGGTTGATT 603
||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||| ||||
Sbjct 542 GCCCTAAAGGATACTGTCCACGTTTCAATAATTCGGTTCCTTTAGAAGAAAGGGTCGATT 601
Query 604 CGGTCTTGAGCCATTTTGATCA-CCTTGAGGACGAAGTTCCTGATTTACTGATGTTGTAT 662
|||||||||||||||| ||||| || |||||||||| |||||||||| |||||||| |||
Sbjct 602 CGGTCTTGAGCCATTTCGATCAGCC-TGAGGACGAAATTCCTGATTTGCTGATGTTATAT 660
Query 663 TTCGATGAGCCAGACCAATCGGGTCATAACTATGGTCCTGATGATCCTCGGGTTACGACT 722
||| ||||||| ||| || | |||||||| ||||||||||| ||||||||| |||| | |
Sbjct 661 TTCAATGAGCCGGACAAAGCAGGTCATAAATATGGTCCTGACGATCCTCGGCTTACAAAT 720
Query 723 GCTGTTTCTAGGGTTGATAAAATGATTGGTAGGGTGATAAAGGGGCTGAAGCAGAGGGAG 782
|| ||||| ||| |||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 721 GCGGTTTCGAGGATTGATAAAATGATTGGTAGGGTGATAAAGGGGCTTAAGAAGAGAGAG 780
Query 783 ATCTTTGATGAGGTTCATGTGATATTGCTTGGTGATCACGGAATGGTGACCAACTGTGAG 842
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 ATCTTTGATGAGGTGCATGTGATACTGCTTGGTGATCACGGAATGGTGACCAACTGTGAA 840
Query 843 TGTAACGAGAAAGCGATTTACATTGATGACTTAGCGGATTGGATCAAGATACCCGCGGCT 902
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 841 TGTAACGAGAAAGCGATTTATATTGATGACTTGGCGGATTGGATCAAGATACCTGCGGCT 900
Query 903 TGGATCCAGGCTTACAGCCCAGTGCTAGCAATCAATCCTCAGTGGGGGAAAGATGTCGAG 962
|||||||| ||||||||||||||||||||||| ||||| || ||||| ||| ||||||||
Sbjct 901 TGGATCCAAGCTTACAGCCCAGTGCTAGCAATTAATCCACAATGGGGCAAAAATGTCGAG 960
Query 963 AATCAAAGCGAAAAGAACGCGGAAGTCGTGGCGAAGATGAACGAAGCTTTGAGCTCAGGG 1022
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 961 AATCAAAGCGAAAAGAACGCCAAAGTCGTGGCAAAGATGAACGAAGCTTTGAGCTCAGGG 1020
Query 1023 AAAGTAAAAAACGGAGAGTTT-TTGAAAGTTTACTTGAAGGAGAAGCTACCAGAGAGACT 1081
|||||||||||||||| ||| ||||| |||||||||||||||||| |||| || |||||
Sbjct 1021 GAAGTAAAAAACGGAGA-TTTATTGAAGGTTTACTTGAAGGAGAAGTTACCGGAAAGACT 1079
Query 1082 GCATTTTTCAGAGAGTTATCGGATTCCACCGATCATAGGAATTGTCGGAGAAGGTCTAAT 1141
||||| ||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1080 GCATTATTCCGAGAGCTATCGGATTCCACCAATCATAGGAATAGTCGGAGAAGGTCTAAT 1139
Query 1142 GGTCAGACAGAACAGAACAAATGCTCAAGTTTGCTATGGAGACCATGGTTAT-GACAACG 1200
|||||||||||| ||||||||| ||||| ||||| ||||||||||||| | ||||||
Sbjct 1140 GGTCAGACAGAATAGAACAAATTCTCAAAAATGCTACGGAGACCATGGTT-TCGACAACA 1198
Query 1201 AGCTCTTCTCGATGAGGACTATTTTTGTCGGACATGGTTCTAGGTTTAGTAGAGGaaaaa 1260
|| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1199 AGTTCTTCTCAATGAGGACTATTTTTGTCGGACATGGTTCTAGGTTTAGGAGAGGAAAGA 1258
Query 1261 aaGTGCCATCATTCGAGAATGTGCAGATCTATAACGTCGTTGCAGAGCTTCTTGGACTCC 1320
|||||||||| || ||||||||| ||||||||| |||||||||||| ||||||||||||
Sbjct 1259 AAGTGCCATCGTTTGAGAATGTGGAGATCTATAGCGTCGTTGCAGATATTCTTGGACTCC 1318
Query 1321 GACCAGCTCCGAACAATGGTTCTTCTTTGTTCCCTCGGAGCATTCTCTTGCCTTCTGGAG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 GACCAGCTCCGAACAATGGTTCTTCTTTGTTCCCTCGGAGCATTCTCTTGCCTTCCGGAG 1378
Query 1381 CAACAAGGGAAGTA-AA-ATGAAGT--AAA-ATCACTTAGCTCATG 1421
||||||||||| || || ||||||| ||| ||| |||||||||||
Sbjct 1379 CAACAAGGGAAATAGAATATGAAGTCTAAATATC-CTTAGCTCATG 1423
> Ahg491793 jgi|Araly1|491793|fgenesh2_kg.7__1226__AT4G29690.1
Length=1547
Score = 953 bits (516), Expect = 0.0
Identities = 1026/1266 (81%), Gaps = 60/1266 (5%)
Strand=Plus/Plus
Query 170 CAAGAAGCTCAACAAACCGGTGGTTTTAATGATCTCTTGCGACGGTTTCCGGTTTGGTTA 229
|||||| |||||||||||||||||| || |||| || ||||||||||||||||| |||||
Sbjct 156 CAAGAAACTCAACAAACCGGTGGTTCTATTGATTTCCTGCGACGGTTTCCGGTTCGGTTA 215
Query 230 CCAATTTAAAACGGACACACCAAACATCGACCTTCTCATATCCGGAGGAACTGAGGCCAA 289
|||||| ||||| || ||||||||||||||||| || |||||| ||||||| || |||||
Sbjct 216 CCAATTCAAAACAGAGACACCAAACATCGACCTGCTTATATCCAGAGGAACCGAAGCCAA 275
Query 290 -ACACGGTTTAATCCCGGTTTTCCCCACCATGACATTCCCAAACCACTACTCTATCGCAA 348
|| ||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 276 GAC-CGGTTTAATTCCGGTTTTCCCCACCATGACGTTCCCAAACCATTACTCAATCGCCA 334
Query 349 CCGGACTCTACCCGGCTTACCACGGTATAATCATGAACAAGTTTACCGATCCGGTTA-CG 407
||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||
Sbjct 335 CCGGACTTTACCCGGCTTCCCACGGTATAATCATGAACAAATTTACCGATCCGGTAAGCG 394
Query 408 GGAGAGGTGTTCAACAAAGG--CTTACAA-CCAAAATGGTGGTTAGGTGAGCCGCTGTGG 464
|| || | |||||| ||| | || || || |||||||||||||||||||| |||||
Sbjct 395 GG-GAACTATTCAAC--AGGAACCTA-AACCCTAAATGGTGGTTAGGTGAGCCATTGTGG 450
Query 465 GTAACCGCAGTAAACCAAGGTCTCAAGGCTGTGACCTACTTTTGGCCAGGCTCTGAAGTT 524
|| || || || ||||| || |||||||||| ||| ||||||||||||||| |||| | |
Sbjct 451 GTGACGGCGGTGAACCAGGGGCTCAAGGCTGCGACTTACTTTTGGCCAGGCGCTGACG-T 509
Query 525 CTA-AAAAGTTCTTGG-ACTTGCCCTGAAGGATATTGTCCACA--T--TT-CAATCTTTC 577
| | ||| | |||||| || ||||| |||||| || | || | | || |||| ||||
Sbjct 510 CCACAAAGGCTCTTGGAAC-TGCCCAAAAGGAT-TT-TGCAAAGCTCCTTACAATGTTTC 566
Query 578 AGTTCCTTTAGAAGAAAGGGTTGATTCGGTCTTGAGCCATTTTGATC-ACCTTG-AGGAC 635
|||||| |||||||||| || ||| || | |||| | |||| |||| || | | | |
Sbjct 567 GGTTCCTCTAGAAGAAAGAGTCGATACGATTTTGAACTATTTCGATCTTCC-AGAAAG-C 624
Query 636 GAAGTTCCTGATTTACTGAT-G-T-TGTATTTCGATGAGCCAGACCAAT-C-GGGTCATA 690
||| | || ||||| | || | | ||||||||||||| || || | || | || |||
Sbjct 625 GAAATCCCCGATTT-C--ATGGCTCTGTATTTCGATGAACCGGA-C-ATACAAGGCCATG 679
Query 691 ACTATGGTCCTGATGATCCTCGGGTTAC-GACTGCTGTTTCTAGGGTTGATAAAATGATT 749
| || || |||||||||||||| || || || || || || | ||| ||||| |||||
Sbjct 680 AGTACGGCCCTGATGATCCTCGCGTCACAGA-AGCGGTCTCAAAGGTCGATAATATGATC 738
Query 750 GGTAGGGTGATAAAG-GGGCTGAAGCAGAGGGAGATCTTTGA-TGAGGTTCATGTGATAT 807
|||||| | || | | ||| ||||| |||| || | ||| | ||| |||||||||||||
Sbjct 739 GGTAGGATCAT-ACGAGGGTTGAAGAAGAGAAAGGT-TTTTAGTGATGTTCATGTGATAT 796
Query 808 TGCTTGGTGATCACGGAATGGTGACCAACTGTGAGTGTAACGAGAAAGCGATTTACATTG 867
|||||||||||||||||||||| || ||| | ||| || |||||| |||||||||||
Sbjct 797 TGCTTGGTGATCACGGAATGGTTACTAAC--T--GTG--ACAAGAAAGTGATTTACATTG 850
Query 868 ATGACTTAGCGGATTGGATCAAGATACCCGCGGCTTGGATCCAGGCTTACAGCCCAGTGC 927
|||| |||||||||||||||||||||||||||| ||||||||| | ||| ||||| ||||
Sbjct 851 ATGATTTAGCGGATTGGATCAAGATACCCGCGGATTGGATCCAAGATTATAGCCCCGTGC 910
Query 928 TAGCAATCAATCCTCAGTGGGGGAAAGATGTCGAGAATCAAAGCGAAAAGAACGCGGAAG 987
|||| || ||||| | |||||| ||||||||| |||||| | |||| ||||| ||||||
Sbjct 911 TAGCGATGAATCCGCGGTGGGGCAAAGATGTCAAGAATCCAGGCGAGAAGAATGCGGAAC 970
Query 988 TCGTGGCGAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAAAAAACGGAGAGTTTTTGA 1047
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 971 TTGTGGCGAAGATGAACGAAGCTTTGAGCTCAGGGAAAGTAGCCAACGGAGAGTTTTT-A 1029
Query 1048 AAGTT-TACTTGAAGGAGAAGCTACCAG-AGAGACTGCATTTTTCAGAGAGTTATCGGAT 1105
|| | |||||||||||||| |||| | | || || |||| ||| || || | ||||||
Sbjct 1030 CAGGTATACTTGAAGGAGAATTTACC-GCAAAGGCTACATTATTCCGATAGCTCTCGGAT 1088
Query 1106 TCCACCGATCATAGGAATTGTCGGAGAAGGTCTAATGGTCAGACAGAACAGAACAAATGC 1165
|||||||||||| ||||| || ||||||||||||||||| | ||||||||||||||| |
Sbjct 1089 TCCACCGATCATCGGAATGGTGGGAGAAGGTCTAATGGTTAAACAGAACAGAACAAACGT 1148
Query 1166 TCAAGTTTGCTATGGAGACCATGGTTATGACAACGA-GCTCTTCTCGATGAGGA-CTATT 1223
||||| || | ||| | ||||| || |||||| | | |||| || ||||| | | ||
Sbjct 1149 TCAAGAATGTTCCGGAAATCATGGATACGACAAC-ATGTTCTTTTCCATGAG-ATCCATC 1206
Query 1224 TTTGTCGGACATGGTTCTAGGTTTAGTAGAGGaaaaaaaGTGCCATCATTCGAGAATGTG 1283
||| | ||| ||||| | |||||||| || |||| |||||||| || || || |||||
Sbjct 1207 TTTATTGGATATGGTCCAAGGTTTAGGAGTGGAAGGAAAGTGCCGTCGTTTGAAAATGTT 1266
Query 1284 CAGATCTATAACG-TCGTTGCAGAGCTTCTTGGACTCCGACCAGCTCCGAACAATGGTTC 1342
||| ||||||| | | ||| ||||| |||| ||||||||||||||||||||||| || ||
Sbjct 1267 CAGGTCTATAATGCT-GTTACAGAGATTCTCGGACTCCGACCAGCTCCGAACAACGGGTC 1325
Query 1343 TTCTTTGTTCCCTCGGAGCATTCTCTTGCC-TTCTGGAGCAACAAGGGAAGTAAAATGAA 1401
||||||||| |||| ||| |||||||||| || ||||| |||| | ||||| ||||||
Sbjct 1326 TTCTTTGTTTACTCGTAGCCTTCTCTTGCCCTT-TGGAGAAACATCGCAAGTAGAATGAA 1384
Query 1402 G-TAAA 1406
| ||||
Sbjct 1385 GCTAAA 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63077445720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5