BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29720.1
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491790 jgi|Araly1|491790|fgenesh2_kg.7__1223__AT4G29720.1 2695 0.0
> Ahg491790 jgi|Araly1|491790|fgenesh2_kg.7__1223__AT4G29720.1
Length=1835
Score = 2695 bits (1459), Expect = 0.0
Identities = 1721/1840 (94%), Gaps = 48/1840 (3%)
Strand=Plus/Plus
Query 1 ATTCACCTTCCTCCGTCCCCTTCCCCTAATCCCCAAAACACACAGATAAAAATCTCTCCT 60
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATTCACCTTCCTCCGTCTCCTTCCCCTAATCCCCAAAA-ACACAGATAAAAATCTCTCC- 58
Query 61 TTTTTCATCGAAGCATATAACACAACACCGACAAGGAGATTCC-TTTAACTATGGCGAAG 119
|||||||| | || ||||||||||||| |||| ||||||||||||||||
Sbjct 59 TTTTTCAT-----C--AT------ACACCGACAAGGATCTTCCTTTTAACTATGGCGAAG 105
Query 120 AAAGCAAGAATTGTTATAATCGGAGCTGGAATGGCTGGTCTCACGGCGGCGAACAAGCTC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 106 AAAGCAAGAATTGTTATAATCGGAGCTGGAATGGCTGGTCTCACGGCGGCTAACAAGCTC 165
Query 180 TACACAAGCTCCAACAACACCTTCGAGCTCTCAGTCGTCGAAGGCGGTTCTAGAATCGGC 239
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 166 TACACAAGCTCCAACAACATGTTCGAGCTCTCCGTCGTCGAAGGCGGTTCTAGAATCGGC 225
Query 240 GGTAGGATCAATACCTCTGAGTTCTCATCAGAGAAGATTGAGATGGGTGCCACGTGGATC 299
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 226 GGGAGGATCAACACCTCTGAGTTCTCCTCCGAGAAGATTGAGATGGGTGCCACGTGGATC 285
Query 300 CACGGAATCGGTGGAAGCCCTGTTTATAGAATCGCTAAAGAGACTGGTTCTTTAGTCTCT 359
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 286 CACGGAATCGGTGGAAGCCCTGTTTATAGAATCGCCAAAGAGACTGGTTCTTTAGTCTCC 345
Query 360 GATGAGCCATGGGAGTGTATGGATTCCACCATTGATAAAGCTAAGACCTTTGCTGAAGGT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GACGAGCCATGGGAGTGTATGGATTCCACCATTGATAAAGCTAAGACCTTTGCTGAAGGT 405
Query 420 GGGTTCGAGATTGAGCCTTCCATTGTTGAATCCATCTCTGGTTTGTTCACTGCTCTCATG 479
|||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 406 GGGTTCGAGATTGAGCCTTCGATTGTTGAATCCATCTCTGGATTGTTCAATGCTCTCATG 465
Query 480 GAATTAGCTCAGGGGAAAGAGATCTCTCAATCCGACGCCGATTTGAG-TCGTTTGGCTCA 538
|| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||
Sbjct 466 GAGTTAGCTCAGGGGAAAGAGATCTCTCAACCCGACGCCGATTTG-GCTCGTTTGTCTCA 524
Query 539 TATTTACGAAACTGCCACTAGGGTTTGCTCTAAGGGAAGTAGTACTAGTGTTGGGTCGTT 598
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 525 TATTTACGAAACTGCCACTAGGGTTTGCTCTACTGGAAGTAGTA---GTGTTGGGTCGTT 581
Query 599 TTTGAAATCTGGGTTTGATGCTTATTGGGATTCAATCAGCAATGGAGGAGAAGAAGGAGT 658
| |||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 582 TCTGAAATCTGGGTTTGACGCGTATTGGGATTCAATCAGCAATGGAGGAGATGATGGAGT 641
Query 659 TAAAGGGTATGGGAAATGGAGTAGGAAGTCACTTGAAGAAGCCATTTTTACGATGTTTAG 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 642 TAAAGGGTATGGGAAATGGAGTAGAAAGTCACTTGAAGAAGCCATTTTTACGATGTTTAG 701
Query 719 TAACACACAGAGGACTTACACATCTGCTGATGAACTCTCGACGCTTGATTTCGCGGCGGA 778
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 702 TAACACACAGAGGACTTACACATCTGCTGATGATCTCTCGACGCTTGATTTCACGGCGGA 761
Query 779 GAGTGAGTATCAGATGTTTCCAGGAGAAGAAATCACTATAGCTAAAGGCTATCTTAGTGT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 762 GAGTGAGTATCAGATGTTTCCAGGAGAAGAAATCACTATAGCTAAAGGCTATCTCAGTGT 821
Query 839 TATTCATCATTTGGCATCTGTGCTTCCTCAAGGTGTTATCCAATTGAATCGAAAGGTCAC 898
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 822 TATTCATCATTTAGCATCTGTTCTTCCTCAAGGTGTTATCCAGTTGAATCGAAAGGTCAC 881
Query 899 GAAGATCGAGTGGCAGAGTAATGAAGTGAAGCTGCATTTCTCAGATGGGTCTGTTGTTTT 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 882 GAAGATCGAGTGGCAGAGTAACGAAGTGAAGCTGCATTTCTCAGATGGGTCTGCTGTTTT 941
Query 959 TGCAGATCATGTTATTGTTACTGTCTCTTTAGGTGTGCTTAAAGCAGGGATTGAGACTGA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 942 TGCAGATCATGTTATTGTTACTGTCTCTTTAGGTGTGCTTAAAGCAGGGATTGAGAGTGA 1001
Query 1019 TGCTGAATTGTTTAGTCCTCCTTTGCCTGATTTCAAATCAGACGCTATTA-GAAGACTAG 1077
|| |||||||||||||||||||||||||||||||| ||||||||||||| || | ||||
Sbjct 1002 TGGAGAATTGTTTAGTCCTCCTTTGCCTGATTTCAAGTCAGACGCTATTAAGAGG-CTAG 1060
Query 1078 GCTATGGAGTTGTCAACAAGCTGTTCGTCGAGATGTCTCAAAGAAAGTTCCCCTCTTTGC 1137
| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||| |||
Sbjct 1061 GTTATGGAGTTGTCAACAAGCTGTTCGTTGAGATGTCTCAGAGAAAGTTTCCGTCTCTGC 1120
Query 1138 AGCTTGTGTTTGACCGGGAGGATTCCGAGTTTAGGTTCGTGAAAATTCCATGGTGGATGA 1197
| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 1121 AACTTGTGTTTGACCGGGAGGATTCTGAGTTTAGGTTTGTGAAAATCCCGTGGTGGATGA 1180
Query 1198 GAAGAACCGCGACCATTACCCCAATCCATAGCAATTCAAAGGTCTTGCTTTCTTGGTTTG 1257
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1181 GAAGAACGGCGACCATTACCCCAATCCATAGCAATTCGAAGGTCTTGCTTTCTTGGTTTG 1240
Query 1258 CAGGCAAAGAAGCTCTCGAGCTTGAGAAACTTACCGATGAGGAGATCAAAGACGCTGTCA 1317
|||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 1241 CAGGCAAAGAAGCTATCGAGCTTGAGAAACTAACCGATGAGGAGATCATAGACGGTGTCA 1300
Query 1318 TGACCACTATCTCTTGCTTGACAGGCAAGGAAGTTAAGA-ATGATACCGCAAAG-C--C- 1372
||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct 1301 TGACCACTATCTCTTGCTTGACAGGCAAGGAAGTTAAGAGA-GATACCGCAAAGACTTCT 1359
Query 1373 ---C-TT-GACCAATGGCTCATTGAATGATGATGATGA--A-GCCATGAAGATTACAAAG 1424
| || |||||||||||| || |||||||||||||| | | |||||||| ||||||
Sbjct 1360 AGGCCTTTGACCAATGGCTCTTTCAATGATGATGATGATGAAGTAATGAAGATCACAAAG 1419
Query 1425 GTCTTGAAGAGCAAATGGGGAAGTGATCCTCTGTT-CAGAGGCTCCTATTCGTATGTAGC 1483
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 1420 GTCTTGAAGAGCAAATGGGGAAGTGATCCTCTGTTTC-GTGGCTCCTATTCGTATGTGGC 1478
Query 1484 GGTTGGATCAAGCGGGGATGACCTAGACGCAATGGCTGAGCCATTGCCAAAGATTAATAA 1543
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1479 GGTCGGGTCAAGCGGGGATGACCTAGACGCCATGGCTGAGCCATTGCCAAAGATTAATAA 1538
Query 1544 GAAGGTTGGTCAGGTCAATGGTCATGATCAAGCCAAGGTTCATGAGCTTCAAGTCATGTT 1603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GAAGGTTGGTCAGGTGAATGGTCATGATCAAGCCAAGGTTCATGAGCTTCAAGTCATGTT 1598
Query 1604 TGCAGGGGAAGCAACACATAGAACCCATTACTCCACAACTCATGGTGCCTACTATAGTGG 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TGCAGGGGAAGCAACACATAGAACCCATTACTCCACAACTCATGGTGCCTACTATAGTGG 1658
Query 1664 TTTAAGGGAAGCCAATAGGCTTCTCAAGCATTACAAATGTAATTTTTGAGTGTTAATTTT 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 TTTAAGGGAAGCCAATAGGCTTCTCAAGCATTACAAATGTAATTTTTGAGTGTTAATTTT 1718
Query 1724 T-AA-AATATGTTCTGttttttttttttGGGGTAA--TGTGTTTAGAGAAGCATAATTAG 1779
| || ||||||||||||||||||| ||| ||| |||||||||||||||||| ||||
Sbjct 1719 TTAAGAATATGTTCTGTTTTTTTT----GGG-TAAAATGTGTTTAGAGAAGCATAGTTAG 1773
Query 1780 ttttgtaagattttttaattgtttaacttcaatttttttt 1819
||||||||||||||||||||||||| ||||||||||||||
Sbjct 1774 TTTTGTAAGATTTTTTAATTGTTTACCTTCAATTTTTTTT 1813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69590877615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5