BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29730.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491789 jgi|Araly1|491789|fgenesh2_kg.7__1222__AT4G29730.1 2527 0.0
Ahg931443 jgi|Araly1|931443|scaffold_303900.1 1205 0.0
> Ahg491789 jgi|Araly1|491789|fgenesh2_kg.7__1222__AT4G29730.1
Length=1724
Score = 2527 bits (1368), Expect = 0.0
Identities = 1632/1754 (93%), Gaps = 40/1754 (2%)
Strand=Plus/Plus
Query 7 AAAGAAGGAAATGGAAAGC---GAAGCAGCAGCGACTGTTCAAGCCACCAGGCCGAGAAG 63
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAGAAGAAAATGGAAAGCGAAGAAGCAGCAGCGACTGTTCAAGCTACCAGGCCGAGAAG 60
Query 64 AGCACCTAGGACTCCGGTGACAGCCATTTTGACGGATAAGAGAAGACGGAAACCTAAGAG 123
|| | |||||||||||||||| |||||||||||| | |||||| | ||||||||| ||||
Sbjct 61 AGTATCTAGGACTCCGGTGACGGCCATTTTGACGAAGAAGAGAGGTCGGAAACCTGAGAG 120
Query 124 CAACAACGAGTCTCAGTT-ACCAT-TTTTGCTACAGCAGAGTCAAAAGGCCACCGTTGAC 181
||| |||||||||| || ||| | ||| | ||||||||||||||||||||| ||||||
Sbjct 121 AAACGACGAGTCTCA-TTCACC-TATTTCCCAACAGCAGAGTCAAAAGGCCACTGTTGAC 178
Query 182 GACACTTACTCTCAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAATCAT 241
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 GACAAGTACTCACAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAACCAT 238
Query 242 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGGTTCT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGCTTCT 298
Query 302 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 358
Query 362 ATAGCCAATTGCGAAACTGTTAATAGGCAGCTTAATGAAAAGGCACACTCTCCATTTGTG 421
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 359 ATAGCCAATTGCGAATCTGTTAATAGGCAGCTTAATGAAGAGGCACACTCTCCAACTGTG 418
Query 422 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATTAGGGAACTCCCTCAA 481
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 419 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATCAGGGAACTCCCACAA 478
Query 482 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATATTCTCATTTGGAACACTGAG 541
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 479 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGACACTGAG 538
Query 542 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCAGATTCTCGTCCAGATTTGTTACTA 601
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCACATTCTCGTCCAGATTTGTTACTA 598
Query 602 ATTGGGCACCAGGATGATGCTGAATTTGCTCTTGCAATGTGCCCAACCGAACCTTTTGTT 661
| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 ACTGGGCACCAGGATAATGCTGAATTTGCTCTTGCCATGTGCCCAACCGAACCTTTTGTT 658
Query 662 CTCTCTGGAGGCAAGGACAAGTCCGTTATTTTGTGGAATATCCAAGACCATATCACAATG 721
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 659 CTCTCTGGAGGGAAGGACAAGTCCGTTGTTTTGTGGAGTATCCAAGACCATATCACAATG 718
Query 722 GCTGGTTCGGATTCCAAATCCCCTGGATCCAGCTTCAAGCAGACTGGTGAAGGTAGTGAT 781
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 719 GCTGGTACGGATTCCAAATCCCCTGGATCAAGCTTCAAGCAGACTGGTGAAGGTAGTAAT 778
Query 782 AAAACTGGTGGTCCTTCTGTTGGCCCTCGAGGCATATATAATGGCCACAAAGATACTGTT 841
||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| |||
Sbjct 779 AAAACTGGTTGTCCTTCTGTTGGCCCTCGAGGCGTATATCATGGCCACGAAGATACAGTT 838
Query 842 GAAGACGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGACGATTCT 901
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 GAAGATGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCT 898
Query 902 TGCCTTATGCTATGGGACGCAAGAACTGGCACTAGTCCTGCCATGAAGGTTGAGAAGGCA 961
||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 899 TGCCTAATGCTATGGGATGCAAGAACTGGCACTGGTCCTGCCATAAAGGTTGAGAAGGCA 958
Query 962 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAATAATCTGATCCTGACT 1021
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAACAATCTGATCCTGACC 1018
Query 1022 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTTACCTCAAATGGAGTT 1081
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTGACCTCAAATGGAGTT 1078
Query 1082 GGTTCACCTGTTTACAAATTTGAAGGCCAC-AGAGCTGCTGTTCTTTGTGTTCAGTGGTC 1140
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1079 GGTTCACCTATTTACAAATTTGAAGGCCACAAG-GCTGCTGTTCTTTGTGTTCAGTGGTC 1137
Query 1141 TCCTGATAAATCATCTGTTTTTGGGAGTTCTGCAGAAGATGGTCTCTTGAACATATGGGA 1200
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1138 TCCTGATAAATCATCTGTGTTTGGGAGTTCAGCAGAAGATGGTCTCTTGAACATATGGGA 1197
Query 1201 TTGTGATAGGGTTGGCAAGAAGTCTGAGCGTGCAACCAAAACTCCTGATGGGCTTTTCTT 1260
| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1198 CTATGATACGGTTGGCAAGAAGTCTGAGCGTGCACCCAAAACTCCTGCTGGGCTTTTCTT 1257
Query 1261 CCAGCATGCTGGTCACAGGGACAAAGTGGTCGACTTCCACTGGAGCCTATTGAACCCTTG 1320
||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||
Sbjct 1258 CCAGCATGCTGGTCACAGGGACAAATTGGTCGACTTCCACTGGAGCCCAATGGACCCTTG 1317
Query 1321 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTATCGGTGGAGGTGGTACATTGCAGAT 1380
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1318 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTAGCGGTGGAGGTGGTACGTTGCAGAT 1377
Query 1381 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1437
Query 1441 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGTCTTGAGGAAGCAATCCCATCATGTC 1500
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1438 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGCCTTGAGGAAGCAACCCCATCATGTC 1497
Query 1501 TATTAGTATTAGTAAGTTGCTGGGGTTTAGTGTCAGTTTTTGCGAGGA-AAATCAGTTTA 1559
|||||||| || || | ||| | ||| ||||| | ||||| || ||
Sbjct 1498 TATTAGTA---GT--GT--C--------AGT-T---TTT--GCGAG-ATAAATCGGTATA 1535
Query 1560 CTTATGCGATTTAGGTGTTATTTTTGCGG-AATATTACTTGGTTTATGT-AGGCCAGTAA 1617
|||||||||||||||||||||||| |||| || |||||||||||| ||| || |||||||
Sbjct 1536 CTTATGCGATTTAGGTGTTATTTTAGCGGGAAAATTACTTGGTTTGTGTCAG-CCAGTAA 1594
Query 1618 TTCAACATATTGGTAGATTTAGGACTTCCGGAATCTTGTATGGTACTTGATCCTGTTTCT 1677
|||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 1595 TTCAACATATTGGTAGGTTTAGGACGTCCGGAATCTTATATGGTTCTTGATCCTGTTTCT 1654
Query 1678 TCAGGTTAATCCTAGGCACCTAACTTGCTTGTATTTTCAA-CttttttttttGTGAATCC 1736
||||||||||| ||||||||||||||||||||| |||||| | || || ||||||||
Sbjct 1655 TCAGGTTAATCGTAGGCACCTAACTTGCTTGTAGTTTCAAACATTGTT----GTGAATCC 1710
Query 1737 AAACTTGGTTAAGC 1750
||||||||||||||
Sbjct 1711 AAACTTGGTTAAGC 1724
> Ahg931443 jgi|Araly1|931443|scaffold_303900.1
Length=1572
Score = 1205 bits (652), Expect = 0.0
Identities = 952/1096 (87%), Gaps = 24/1096 (2%)
Strand=Plus/Plus
Query 395 AATGAA-AAGGCACACTCTCCATTTGTGAAGAAGTACAAGACCATCATCCACCCTGGAGA 453
|||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 462 AATGAAGAA-GCACGTTCTCCATTTGTGAAGAAGTACAAGACCATCATTCACCCTGGAGA 520
Query 454 GGTCAACAGAATTAGGGAACTCCCTCAAAATAGCAAGATTGTAGCTACTCACACCGACAG 513
||| |||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 521 GGTTAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTTGCTACTCACACCGACAG 580
Query 514 TCCTGATATTCTCATTTGGAACACTGAGACTCAACCAGACCGGT-ATGCTGTGCTTGGAG 572
||||||| ||||||||||| | ||| || |||||| ||| || |||||||||||||||
Sbjct 581 TCCTGATGTTCTCATTTGGGATGTTGAAACCCAACCAAACC-GTCATGCTGTGCTTGGAG 639
Query 573 CTCCAGATTCTCGTCCAGATTTGTTACTAATTGGGCACCAGGATGATGCTGAATTTGCTC 632
|| || |||| |||||||||||| |||||| ||||||||| ||| |||||||||||||||
Sbjct 640 CTGCAAATTCCCGTCCAGATTTGATACTAACTGGGCACCAAGATAATGCTGAATTTGCTC 699
Query 633 TTGCAATGTGCCCAACCGAACCTTTTGTTCTCTCTGGAGGCAAGGACAAGTCCGTTATTT 692
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | |
Sbjct 700 TTGCAATGTGCCCAACCGAACCCTTTGTGCTCTCTGGAGGCAAGGACAAGTCAGTTGTGT 759
Query 693 TGTGGAATATCCAAGACCATATCACAATGGCTGGTTCGGATTCCAAATCCCCTGGATCCA 752
|||||| ||||||||| || ||||||| || ||| | ||||||||||| ||||||| |
Sbjct 760 TGTGGAGTATCCAAGATCACATCACAACGGTTGGGACAGATTCCAAATCTTCTGGATCTA 819
Query 753 GCTTCAAGCAGACTGGTGAAGGTAGTGATAA-AACTGGTG-GTCCTTCTGTTGGCCCTCG 810
| |||| ||||||||||||||||||||||| || | | | ||||| | |||||||| ||
Sbjct 820 TCATCAAACAGACTGGTGAAGGTAGTGATAAGAA-T-GAGAGTCCTACCGTTGGCCCACG 877
Query 811 AGGCATATATAATGGCCACAAAGATACTGTTGAAGACGTGGCATTCTGTCC-ATCTAGTG 869
||| ||||| ||||||| ||||||| |||||||| ||||||||| |||| | | ||||
Sbjct 878 AGGTGTATATCATGGCCATGAAGATACAGTTGAAGATGTGGCATTCAGTCCGA-CGAGTG 936
Query 870 CACAAGAATTCTGCAGTGTTGGTGACGATTCTTGCCTTATGCTATGGGACGCAAGAACTG 929
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 937 CACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTTATACTATGGGATGCAAGAACTG 996
Query 930 GCACTAGTCCTGCCA-TGAAGGTTGAGAAGGCACATGATGCTGATCTTCACTGTGTCGAT 988
|||| | |||| || | |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 997 GCACAAACCCTGTCACT-AAGGTTGAGAAGGCGCATGATGCTGATCTTCATTGTGTCGAT 1055
Query 989 TGGAATCCTCATGACAATAATCTGATCCTGACTGGGTCAGCAGATAACACTGTCC-GTGT 1047
|||||||| |||||| | |||||||||||||| ||||||||||| |||||||||| || |
Sbjct 1056 TGGAATCCCCATGACGACAATCTGATCCTGACAGGGTCAGCAGACAACACTGTCCGGT-T 1114
Query 1048 GTTTGACCGCCGAAACCTTACCTCAAATGGAGTTGGTTCACCTGTTTACAAATTTGAAGG 1107
|||||| || | || |||||| | |||||||| || |||||| ||||||||||||| ||
Sbjct 1115 GTTTGATCGTAGGAAGCTTACCGCTAATGGAGTCGGGTCACCTATTTACAAATTTGAGGG 1174
Query 1108 CCACAGAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAATCATCTGTTTTTGGGAG 1167
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1175 CCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAGTCATCTGTCTTTGGGAG 1234
Query 1168 TTCTGCAGAAGATGGTCTCTTGAACATATGGGATTGTGATAGGGTTGGCAAGAAGTCTGA 1227
||||||||||| |||||||||||||| ||||||| ||| ||||| | |||||||||||
Sbjct 1235 CTCTGCAGAAGACGGTCTCTTGAACATCTGGGATTATGACAGGGTCAGTAAGAAGTCTGA 1294
Query 1228 GCGTGCAACCAAAA-CTCCTGATGGGCTTTTCTTCCAGCATGCTGGTCACAGGGACAAAG 1286
|||||| | |||| | || | |||||| |||||||||||||||||||||||||||||||
Sbjct 1295 TCGTGCAGCTAAAAGC-CCCGCTGGGCTCTTCTTCCAGCATGCTGGTCACAGGGACAAAG 1353
Query 1287 TGGTCGACTTCCACTGG-A-GCCTATTGA-ACCCTTGGACTATTGTCAGTGTTTCTGATA 1343
| || || ||||||||| | | | || | |||||||||| ||||||||||||||||||
Sbjct 1354 TTGTTGATTTCCACTGGAATG-C--TTCAGACCCTTGGACAATTGTCAGTGTTTCTGATG 1410
Query 1344 ATTGTGAGAGTATC-GGTGGAGGTGGTACATTGCAGATATGGCGGATGAGTGACTTGATT 1402
| ||||||| || | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1411 ACTGTGAGACTA-CTGGTGGAGGTGGAACATTGCAGATATGGCGGATGAGTGACTTGATT 1469
Query 1403 TACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAAATTCAAGTCACATGTTTTCACA 1462
|||||||| ||||| |||||| || |||| | ||||| |||||||| |||||||| ||
Sbjct 1470 TACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGTTCAAGTCGCATGTTTTGACT 1529
Query 1463 TGTACCTCCAAGTCTT 1478
||| |||||||| |||
Sbjct 1530 TGTGCCTCCAAGCCTT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5