BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29730.1 Length=1750 Score E Sequences producing significant alignments: (Bits) Value Ahg491789 jgi|Araly1|491789|fgenesh2_kg.7__1222__AT4G29730.1 2527 0.0 Ahg931443 jgi|Araly1|931443|scaffold_303900.1 1205 0.0 > Ahg491789 jgi|Araly1|491789|fgenesh2_kg.7__1222__AT4G29730.1 Length=1724 Score = 2527 bits (1368), Expect = 0.0 Identities = 1632/1754 (93%), Gaps = 40/1754 (2%) Strand=Plus/Plus Query 7 AAAGAAGGAAATGGAAAGC---GAAGCAGCAGCGACTGTTCAAGCCACCAGGCCGAGAAG 63 ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1 AAAGAAGAAAATGGAAAGCGAAGAAGCAGCAGCGACTGTTCAAGCTACCAGGCCGAGAAG 60 Query 64 AGCACCTAGGACTCCGGTGACAGCCATTTTGACGGATAAGAGAAGACGGAAACCTAAGAG 123 || | |||||||||||||||| |||||||||||| | |||||| | ||||||||| |||| Sbjct 61 AGTATCTAGGACTCCGGTGACGGCCATTTTGACGAAGAAGAGAGGTCGGAAACCTGAGAG 120 Query 124 CAACAACGAGTCTCAGTT-ACCAT-TTTTGCTACAGCAGAGTCAAAAGGCCACCGTTGAC 181 ||| |||||||||| || ||| | ||| | ||||||||||||||||||||| |||||| Sbjct 121 AAACGACGAGTCTCA-TTCACC-TATTTCCCAACAGCAGAGTCAAAAGGCCACTGTTGAC 178 Query 182 GACACTTACTCTCAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAATCAT 241 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 179 GACAAGTACTCACAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAACCAT 238 Query 242 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGGTTCT 301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 239 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGCTTCT 298 Query 302 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 358 Query 362 ATAGCCAATTGCGAAACTGTTAATAGGCAGCTTAATGAAAAGGCACACTCTCCATTTGTG 421 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| Sbjct 359 ATAGCCAATTGCGAATCTGTTAATAGGCAGCTTAATGAAGAGGCACACTCTCCAACTGTG 418 Query 422 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATTAGGGAACTCCCTCAA 481 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 419 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATCAGGGAACTCCCACAA 478 Query 482 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATATTCTCATTTGGAACACTGAG 541 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 479 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGACACTGAG 538 Query 542 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCAGATTCTCGTCCAGATTTGTTACTA 601 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 539 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCACATTCTCGTCCAGATTTGTTACTA 598 Query 602 ATTGGGCACCAGGATGATGCTGAATTTGCTCTTGCAATGTGCCCAACCGAACCTTTTGTT 661 | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 599 ACTGGGCACCAGGATAATGCTGAATTTGCTCTTGCCATGTGCCCAACCGAACCTTTTGTT 658 Query 662 CTCTCTGGAGGCAAGGACAAGTCCGTTATTTTGTGGAATATCCAAGACCATATCACAATG 721 ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 659 CTCTCTGGAGGGAAGGACAAGTCCGTTGTTTTGTGGAGTATCCAAGACCATATCACAATG 718 Query 722 GCTGGTTCGGATTCCAAATCCCCTGGATCCAGCTTCAAGCAGACTGGTGAAGGTAGTGAT 781 |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 719 GCTGGTACGGATTCCAAATCCCCTGGATCAAGCTTCAAGCAGACTGGTGAAGGTAGTAAT 778 Query 782 AAAACTGGTGGTCCTTCTGTTGGCCCTCGAGGCATATATAATGGCCACAAAGATACTGTT 841 ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| ||| Sbjct 779 AAAACTGGTTGTCCTTCTGTTGGCCCTCGAGGCGTATATCATGGCCACGAAGATACAGTT 838 Query 842 GAAGACGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGACGATTCT 901 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 839 GAAGATGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCT 898 Query 902 TGCCTTATGCTATGGGACGCAAGAACTGGCACTAGTCCTGCCATGAAGGTTGAGAAGGCA 961 ||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| Sbjct 899 TGCCTAATGCTATGGGATGCAAGAACTGGCACTGGTCCTGCCATAAAGGTTGAGAAGGCA 958 Query 962 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAATAATCTGATCCTGACT 1021 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 959 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAACAATCTGATCCTGACC 1018 Query 1022 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTTACCTCAAATGGAGTT 1081 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1019 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTGACCTCAAATGGAGTT 1078 Query 1082 GGTTCACCTGTTTACAAATTTGAAGGCCAC-AGAGCTGCTGTTCTTTGTGTTCAGTGGTC 1140 ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1079 GGTTCACCTATTTACAAATTTGAAGGCCACAAG-GCTGCTGTTCTTTGTGTTCAGTGGTC 1137 Query 1141 TCCTGATAAATCATCTGTTTTTGGGAGTTCTGCAGAAGATGGTCTCTTGAACATATGGGA 1200 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1138 TCCTGATAAATCATCTGTGTTTGGGAGTTCAGCAGAAGATGGTCTCTTGAACATATGGGA 1197 Query 1201 TTGTGATAGGGTTGGCAAGAAGTCTGAGCGTGCAACCAAAACTCCTGATGGGCTTTTCTT 1260 | ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1198 CTATGATACGGTTGGCAAGAAGTCTGAGCGTGCACCCAAAACTCCTGCTGGGCTTTTCTT 1257 Query 1261 CCAGCATGCTGGTCACAGGGACAAAGTGGTCGACTTCCACTGGAGCCTATTGAACCCTTG 1320 ||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||| Sbjct 1258 CCAGCATGCTGGTCACAGGGACAAATTGGTCGACTTCCACTGGAGCCCAATGGACCCTTG 1317 Query 1321 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTATCGGTGGAGGTGGTACATTGCAGAT 1380 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1318 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTAGCGGTGGAGGTGGTACGTTGCAGAT 1377 Query 1381 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1437 Query 1441 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGTCTTGAGGAAGCAATCCCATCATGTC 1500 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1438 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGCCTTGAGGAAGCAACCCCATCATGTC 1497 Query 1501 TATTAGTATTAGTAAGTTGCTGGGGTTTAGTGTCAGTTTTTGCGAGGA-AAATCAGTTTA 1559 |||||||| || || | ||| | ||| ||||| | ||||| || || Sbjct 1498 TATTAGTA---GT--GT--C--------AGT-T---TTT--GCGAG-ATAAATCGGTATA 1535 Query 1560 CTTATGCGATTTAGGTGTTATTTTTGCGG-AATATTACTTGGTTTATGT-AGGCCAGTAA 1617 |||||||||||||||||||||||| |||| || |||||||||||| ||| || ||||||| Sbjct 1536 CTTATGCGATTTAGGTGTTATTTTAGCGGGAAAATTACTTGGTTTGTGTCAG-CCAGTAA 1594 Query 1618 TTCAACATATTGGTAGATTTAGGACTTCCGGAATCTTGTATGGTACTTGATCCTGTTTCT 1677 |||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 1595 TTCAACATATTGGTAGGTTTAGGACGTCCGGAATCTTATATGGTTCTTGATCCTGTTTCT 1654 Query 1678 TCAGGTTAATCCTAGGCACCTAACTTGCTTGTATTTTCAA-CttttttttttGTGAATCC 1736 ||||||||||| ||||||||||||||||||||| |||||| | || || |||||||| Sbjct 1655 TCAGGTTAATCGTAGGCACCTAACTTGCTTGTAGTTTCAAACATTGTT----GTGAATCC 1710 Query 1737 AAACTTGGTTAAGC 1750 |||||||||||||| Sbjct 1711 AAACTTGGTTAAGC 1724 > Ahg931443 jgi|Araly1|931443|scaffold_303900.1 Length=1572 Score = 1205 bits (652), Expect = 0.0 Identities = 952/1096 (87%), Gaps = 24/1096 (2%) Strand=Plus/Plus Query 395 AATGAA-AAGGCACACTCTCCATTTGTGAAGAAGTACAAGACCATCATCCACCCTGGAGA 453 |||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 462 AATGAAGAA-GCACGTTCTCCATTTGTGAAGAAGTACAAGACCATCATTCACCCTGGAGA 520 Query 454 GGTCAACAGAATTAGGGAACTCCCTCAAAATAGCAAGATTGTAGCTACTCACACCGACAG 513 ||| |||||||| ||||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct 521 GGTTAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTTGCTACTCACACCGACAG 580 Query 514 TCCTGATATTCTCATTTGGAACACTGAGACTCAACCAGACCGGT-ATGCTGTGCTTGGAG 572 ||||||| ||||||||||| | ||| || |||||| ||| || ||||||||||||||| Sbjct 581 TCCTGATGTTCTCATTTGGGATGTTGAAACCCAACCAAACC-GTCATGCTGTGCTTGGAG 639 Query 573 CTCCAGATTCTCGTCCAGATTTGTTACTAATTGGGCACCAGGATGATGCTGAATTTGCTC 632 || || |||| |||||||||||| |||||| ||||||||| ||| ||||||||||||||| Sbjct 640 CTGCAAATTCCCGTCCAGATTTGATACTAACTGGGCACCAAGATAATGCTGAATTTGCTC 699 Query 633 TTGCAATGTGCCCAACCGAACCTTTTGTTCTCTCTGGAGGCAAGGACAAGTCCGTTATTT 692 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | | Sbjct 700 TTGCAATGTGCCCAACCGAACCCTTTGTGCTCTCTGGAGGCAAGGACAAGTCAGTTGTGT 759 Query 693 TGTGGAATATCCAAGACCATATCACAATGGCTGGTTCGGATTCCAAATCCCCTGGATCCA 752 |||||| ||||||||| || ||||||| || ||| | ||||||||||| ||||||| | Sbjct 760 TGTGGAGTATCCAAGATCACATCACAACGGTTGGGACAGATTCCAAATCTTCTGGATCTA 819 Query 753 GCTTCAAGCAGACTGGTGAAGGTAGTGATAA-AACTGGTG-GTCCTTCTGTTGGCCCTCG 810 | |||| ||||||||||||||||||||||| || | | | ||||| | |||||||| || Sbjct 820 TCATCAAACAGACTGGTGAAGGTAGTGATAAGAA-T-GAGAGTCCTACCGTTGGCCCACG 877 Query 811 AGGCATATATAATGGCCACAAAGATACTGTTGAAGACGTGGCATTCTGTCC-ATCTAGTG 869 ||| ||||| ||||||| ||||||| |||||||| ||||||||| |||| | | |||| Sbjct 878 AGGTGTATATCATGGCCATGAAGATACAGTTGAAGATGTGGCATTCAGTCCGA-CGAGTG 936 Query 870 CACAAGAATTCTGCAGTGTTGGTGACGATTCTTGCCTTATGCTATGGGACGCAAGAACTG 929 ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 937 CACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTTATACTATGGGATGCAAGAACTG 996 Query 930 GCACTAGTCCTGCCA-TGAAGGTTGAGAAGGCACATGATGCTGATCTTCACTGTGTCGAT 988 |||| | |||| || | |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 997 GCACAAACCCTGTCACT-AAGGTTGAGAAGGCGCATGATGCTGATCTTCATTGTGTCGAT 1055 Query 989 TGGAATCCTCATGACAATAATCTGATCCTGACTGGGTCAGCAGATAACACTGTCC-GTGT 1047 |||||||| |||||| | |||||||||||||| ||||||||||| |||||||||| || | Sbjct 1056 TGGAATCCCCATGACGACAATCTGATCCTGACAGGGTCAGCAGACAACACTGTCCGGT-T 1114 Query 1048 GTTTGACCGCCGAAACCTTACCTCAAATGGAGTTGGTTCACCTGTTTACAAATTTGAAGG 1107 |||||| || | || |||||| | |||||||| || |||||| ||||||||||||| || Sbjct 1115 GTTTGATCGTAGGAAGCTTACCGCTAATGGAGTCGGGTCACCTATTTACAAATTTGAGGG 1174 Query 1108 CCACAGAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAATCATCTGTTTTTGGGAG 1167 ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1175 CCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAGTCATCTGTCTTTGGGAG 1234 Query 1168 TTCTGCAGAAGATGGTCTCTTGAACATATGGGATTGTGATAGGGTTGGCAAGAAGTCTGA 1227 ||||||||||| |||||||||||||| ||||||| ||| ||||| | ||||||||||| Sbjct 1235 CTCTGCAGAAGACGGTCTCTTGAACATCTGGGATTATGACAGGGTCAGTAAGAAGTCTGA 1294 Query 1228 GCGTGCAACCAAAA-CTCCTGATGGGCTTTTCTTCCAGCATGCTGGTCACAGGGACAAAG 1286 |||||| | |||| | || | |||||| ||||||||||||||||||||||||||||||| Sbjct 1295 TCGTGCAGCTAAAAGC-CCCGCTGGGCTCTTCTTCCAGCATGCTGGTCACAGGGACAAAG 1353 Query 1287 TGGTCGACTTCCACTGG-A-GCCTATTGA-ACCCTTGGACTATTGTCAGTGTTTCTGATA 1343 | || || ||||||||| | | | || | |||||||||| |||||||||||||||||| Sbjct 1354 TTGTTGATTTCCACTGGAATG-C--TTCAGACCCTTGGACAATTGTCAGTGTTTCTGATG 1410 Query 1344 ATTGTGAGAGTATC-GGTGGAGGTGGTACATTGCAGATATGGCGGATGAGTGACTTGATT 1402 | ||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1411 ACTGTGAGACTA-CTGGTGGAGGTGGAACATTGCAGATATGGCGGATGAGTGACTTGATT 1469 Query 1403 TACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAAATTCAAGTCACATGTTTTCACA 1462 |||||||| ||||| |||||| || |||| | ||||| |||||||| |||||||| || Sbjct 1470 TACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGTTCAAGTCGCATGTTTTGACT 1529 Query 1463 TGTACCTCCAAGTCTT 1478 ||| |||||||| ||| Sbjct 1530 TGTGCCTCCAAGCCTT 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65667582380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5