BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29735.2

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945034 jgi|Araly1|945034|scaffold_701263.1                        470    8e-132


> Ahg945034 jgi|Araly1|945034|scaffold_701263.1
Length=475

 Score =  470 bits (254),  Expect = 8e-132
 Identities = 314/341 (92%), Gaps = 12/341 (4%)
 Strand=Plus/Plus

Query  270  ATCTATGAAGCTACATCATCCAGGAAAAACCGAAGCGTCGGAAAGGAGCTCGCTACTTCA  329
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  128  ATCTATGAAGCTACATCATCCAGGAAAAACCGAAGCCTCGGAAAGGAGCTCGCTACTTCA  187

Query  330  GCAGTTGCATCTGTCTTCTTGGGTTTTGGATCGTTGTTTTTGCTACTTGCTAGTGGTGTT  389
            |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct  188  GCAGTTGCATCTGTCTTCTTGGGTTTTGGATCCTTGTTTCTGCTTCTTGCTAGTGGTGTT  247

Query  390  TATGTCTGATCCTTCTTCCTCAA-TACTATTCCCAACTAGTTCAAAGACaaaaaaa-aCA  447
            ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct  248  TATGTTTGATCCTTCTTCCTCAAATACTAT-CCCAACTAGTTCAAAGACAAAAAAAGACA  306

Query  448  GATTTATCTTTGTTCAAGTAAAATCAGAGTTATGAATGTTAAGACTT-GAGAAGTAGCCT  506
            |||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct  307  GATTTATCTTTGTTGAAGTGAAATCAGAGTTATGAATGTTA-GACTTTGAGAAGTAGCCT  365

Query  507  TTAAACACCAAGTTACAATTAAATTATCTTCTTCTTTTGAACGCTAAACCGAGTTTTGGT  566
            |||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| |  
Sbjct  366  TTAAACACCAAGTTGCAATTGAATTATCTTGTGCTTTTGAACGCTAAACCGAGTTT-G--  422

Query  567  TTCAATTTTCACCGCCTTTAGAACAGCGTTTGCGTTGTTAA  607
               ||||| |||| || ||||||||  ||||||||||||||
Sbjct  423  ---AATTT-CACCTCCATTAGAACATTGTTTGCGTTGTTAA  459


 Score =  219 bits (118),  Expect = 3e-56
 Identities = 126/130 (97%), Gaps = 0/130 (0%)
 Strand=Plus/Plus

Query  77   gaagaagaagaagaGCTTAGCAACAATGGCGGCGAAACCGATTGCGAGTCCGATTCCGGT  136
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    GAAGAAGAAGAAGAGCTTAGCAACAATGGCGGCAAAACCGATTGCGAGTCCGATTCCGGT  60

Query  137  GGCGCTGTATCCGACTTTATCGGTGTTCACTCTTGCGATTGGTCTCGTCATTACCGCTAT  196
            ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   GGCTCTGTATCCGACTTTGTCGGTGTTCACTCTTGCGATTGGCCTCGTCATTACCGCTAT  120

Query  197  CTTCTTCATC  206
            ||||||||||
Sbjct  121  CTTCTTCATC  130



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26533550232


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5