BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29740.2
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889155 jgi|Araly1|889155|Al_scaffold_0007_1141 2534 0.0
Ahg480522 jgi|Araly1|480522|fgenesh2_kg.3__3223__AT2G19500.1 676 0.0
> Ahg889155 jgi|Araly1|889155|Al_scaffold_0007_1141
Length=1578
Score = 2534 bits (1372), Expect = 0.0
Identities = 1512/1580 (96%), Gaps = 7/1580 (0%)
Strand=Plus/Plus
Query 87 ATGACTAATACTCTCTGTTTAAGCCTCATCACCCTAATAACGCTTTTTATAAGTTTAACC 146
||||||| || |||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTAGTAATCTCGGTTCAAGCATCATCACCCTAATAACGCTTTTTATAAGTTTAACC 60
Query 147 CCAACCTTAATCAAATCAGATGAGGGCATTGATGTTTTCTTACCCATATCACTCAACCTT 206
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CCAACCTTAATCAAATCAGATGAGGGCATTGATGTCTTCTTACCCATATCACTCAACCTC 120
Query 207 ACGGTCCTAACCGATCCCTTCTCCATCTCTGCCGCTTCTCACGACTTCGGTAACATAACC 266
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 ACGGTCCTAACCGATCCTTTCTCCATCTCCGCCGCTTCTCATGACTTCGGTAACATAACC 180
Query 267 GACGAAAATCCCGGCGCCGTCCTCTGCCCTTCCTCCACCACGGAGGTGGCTCGTCTCCTC 326
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGAAAACCCCGGCGCCGTCCTCTGCCCTTCCTCCACCACGGAGGTGGCTCGTCTCCTT 240
Query 327 CGTTTCGCTAACGGAGGATTCTCTTACAATAAAGG-CTCAACCAGCCCCGCGTCTACTTT 385
|||||||| |||||||||||||| ||||| | || ||||||||| ||| || |||||||
Sbjct 241 CGTTTCGCCAACGGAGGATTCTCGTACAA-CAGGGACTCAACCAGACCCACGCCTACTTT 299
Query 386 CAAAGTGGCTGCTCGAGGCCAAGGCCACTCCCTCCGTGGCCAAGCCTCTGCACCCGGAGG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAAGTGGCTGCTCGAGGCCAAGGCCACTCCCTCCGTGGCCAAGCCTCTGCACCCGGAGG 359
Query 446 TGTCGTCGTGAACATGACGTGTCTCGCCATGGCGGCTAAACCAGCGGCGGTTGTTATCTC 505
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TGTCGTCGTGAACATGACGTGTCTCGCCAAGGCGGCTAAACCAGCGGCGGTTGTTATCTC 419
Query 506 GGCAGACGGGACTTACGCTGACGTGGCTGCCGGGACGATGTGGGTGGATGTTCTGAAGGC 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCAGACGGGACTTACGCTGACGTGGCTGCCGGGACGATGTGGGTGGATGTTCTGAAGGC 479
Query 566 GGCGGTGGATAGAGGCGTCTCGCCGGTTACATGGACGGATTATTTGTATCTCAGCGTCGG 625
||||| ||| |||||||||||||||||| | |||||||||||||||||||| ||||| ||
Sbjct 480 GGCGGGGGAGAGAGGCGTCTCGCCGGTTTCTTGGACGGATTATTTGTATCTTAGCGTTGG 539
Query 626 CGGGACGTTGTCGAACGCTGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAG 685
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGGACGTTGTCCAACGCTGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAG 599
Query 686 TAACGTTCATGAGCTTGACGTTATTACCGGAAAAGGTGAAATGATGACTTGCTCTCCAAA 745
|| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 600 TAGCGTTCATGAGCTTGACGTCATTACTGGAAAAGGTGAAATGATGACTTGCTCGCCAAA 659
Query 746 GTTAAACCCTGAATTGTTCTATGGAGTTTTAGGAGGTTTGGGTCAATTCGGTATTATAAC 805
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 660 GTTAAACCCTGAATTGTTCTATGGGGTTTTAGGAGGTCTGGGTCAATTCGGTATTATAAC 719
Query 806 GAGGGCCAGGATTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGGGCCAGGATTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTA 779
Query 866 CAGTGACTTCTCGGCTTTTAAAAGAGACCAAGAGCGTTTAATATCAATGACCAATGATC- 924
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 CAGTGACTTCTCGTCTTTTAAAAGAGACCAAGAGCGTTTGATATCAATGACCAATGATCG 839
Query 925 TCG-G-AGTTGACTTTTTGGAAGGTCAACTTATGATGTCAAATGGCTTCGTAGACACCTC 982
| | | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 840 TGGTGGAGTTGACTTTTTGGAAGGTCAACTGATGATGTCAAACGGCTTCGTAGACACCTC 899
Query 983 TTTCTTCCCACTCTCCGATCAAACAAGAGTCGCATCTCTTGTGAATGACCACCGGATCAT 1042
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 TTTCTTCCCACTCTCCGATCAAACAAGAGTCGCATCTCTTGTGAATGACCACCGTATCAT 959
Query 1043 CTATGTTCTCGAAGTAGCCAAGTATTATGACAGAACCACCCTTCCCATTATTGACCAGGT 1102
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 960 CTATGTTCTCGAAGTAGCCAAGTATTATGATAGAACCACCCTTCCCATCATTGACCAGGT 1019
Query 1103 GATTGACACGTTAAGTAGAACTCTAGGTTTCGCTCCAGGGTTTATGTTCGTACAAGATGT 1162
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GATTGACATGTTAACTAGAACTCTAGGTTTCGCTCCGGGGTTTATGTTCGTACAAGATGT 1079
Query 1163 TCCGTATTTCGATTTCTTGAACCGTGTCCGAAACGAAGAAGATAAACTCAGATCTTTAGG 1222
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCCTTATTTCGATTTCTTGAATCGTGTCCGAAACGAAGAAGATAAACTCAGATCTTTAGG 1139
Query 1223 ACTATGGGAAGTTCCTCATCCATGGCTTAACATCTTTGTCCCGGGGTCTCGAATCCA-AG 1281
||||||||||||||||||||||||||||||||||| || ||||| |||||||| | ||
Sbjct 1140 GCTATGGGAAGTTCCTCATCCATGGCTTAACATCTTCGTACCGGGATCTCGAATT-ATAG 1198
Query 1282 ATTTTCATGATGGTGTTATTAATGGCCTTCTTCTAAACCAAACCTCAACTTCTGGTGTTA 1341
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1199 ATTTTCATGATGGTGTTATCAATGGCCTTCTTCTAAACCAAACCTCTACTACTGGTGTTA 1258
Query 1342 CTCTCTTCTATCCCACAAACCGAAACAAATGGAACAACCGCATGTCAACGATGACACCGG 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTCTCTTCTATCCCACAAACCGAAACAAATGGAACAACCGCATGTCAACGATGACACCGG 1318
Query 1402 ACGAAGATGTTTTTTATGTGATCGGATTACTGCAATCAGCTGGTGGATCTCAAAATTGGC 1461
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1319 ACGAAGATGTTTTTTATGTGATCGGATTCCTGCAATCAGCTGGTGGATCTCAAAATTGGC 1378
Query 1462 AAGAACTTGAAAATCTCAACGACAAGGTTATTCAGTTTTGTGAAAACTCGGGAATTAAGA 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAGAACTTGAAAATCTCAACGACAAGGTTATTCAGTTTTGTGAAAACTCGGGAATTAAGA 1438
Query 1522 TTAAGGAATATTTGATGCACTATACAAGAAAAGAAGATTGGGTTAAACATTTTGGACCAA 1581
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTAAAGAATATTTGATGCATTATACAAGAAAAGAAGATTGGGTTAAACATTTTGGACCAA 1498
Query 1582 AATGGGATGATTTTTTAAGAAAGAAAATTATGTTTGATCCCAAAAGACTATTGTCTCCAG 1641
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AATGGGATGATTTTTTGAGGAAGAAAATTATGTTTGATCCCAAAAGACTATTGTCTCCAG 1558
Query 1642 GACAAGACATATTTAATTAA 1661
||||||||||||||||||||
Sbjct 1559 GACAAGACATATTTAATTAA 1578
> Ahg480522 jgi|Araly1|480522|fgenesh2_kg.3__3223__AT2G19500.1
Length=1580
Score = 676 bits (366), Expect = 0.0
Identities = 915/1174 (78%), Gaps = 62/1174 (5%)
Strand=Plus/Plus
Query 522 GCTGACGTGGCTGCCGGGACGATGTGGGTGGA--TGTT-CTGAAGGCGGCGGTGGATAGA 578
||||||||||| ||||||||| | ||||| | |||| |||| |||||| ||| ||
Sbjct 429 GCTGACGTGGCGGCCGGGACGTTATGGGTAAATGTGTTAAAGAAGACGGCGGAGGA-AG- 486
Query 579 GGCGTCTCGCCGGTTACATGGACGGATTATTTGTATCTCAGCGTCGGCGGGACGTTGTCG 638
|| || ||||||||| | ||||||||||||||| || | | |||||| || |||||||||
Sbjct 487 GG-GTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGGAACGTTGTCG 545
Query 639 AACGCTGGAATCGGTGGTC-AGACGTTTAGACACGGCCCTCAGATTAGTAACGTTCATGA 697
|| | ||| |||||||||| || |||| || |||| |||| ||||| ||||| | |||
Sbjct 546 AATGGTGGCATCGGTGGTCAAG-TGTTTCGAAACGGTCCTCTTATTAGGAACGTCCTTGA 604
Query 698 GCTT-GACGTTATTACCGGAAAAGGTGAAATGATGACTTGCTCTCCAAAGTTAAACCCTG 756
|| |||||||| || || ||||| ||| || |||| ||||| | | || |||| || |
Sbjct 605 -ATTGGACGTTATAACTGGGAAAGGGGAAGTGTTGACATGCTCGCGACAGCTAAATCCAG 663
Query 757 AATTGTTCTATGGAGTTTTAGGAGGTTTGGGTCAATTCGGTATTATAACGAGGGCCAGGA 816
|||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct 664 AATTGTTCTATGGAGTTTTAGGAGGTTTAGGTCAATTTGGAATTATAACGAGAGCCAGAA 723
Query 817 TTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTACAGTGACTTCT 876
||| ||||| |||||||| | ||||| ||||||| ||| || |||||||||||||||
Sbjct 724 TTGTTTTGGACCATGCACCTAAAAGGGCCAAATGGTTTCGGATGCTCTACAGTGACTTCA 783
Query 877 CGGCTTTTAA-AAGAGACCAAGAGCGTTTAATATCAATGACCAATGATCTCGGAGTTGAC 935
| |||||| ||| |||||||| ||||| ||||||||| ||||||| | |||||||||
Sbjct 784 CAACTTTTACGAAG-GACCAAGAACGTTTGATATCAATGGTCAATGATATTGGAGTTGAC 842
Query 936 TTTTTGGAAGGTCAACT-TATGATGTCAAATGGCTTCGTAGACACCTCTTTCTTCCCACT 994
| ||| ||||||||| | | | | ||||| ||| ||||||| |||||||| |||||||
Sbjct 843 TATTTAGAAGGTCAAATATTTC-TATCAAACGGCGTCGTAGATACCTCTTTTTTCCCAC- 900
Query 995 C-TCCGATCAAAC-AAGAGTCGCATCTCTT-GTGAATGACCACCG-GATCATCTATGTTC 1050
| ||||| ||| | || |||||| | ||| ||||| || ||| | | |||| |||||||
Sbjct 901 CGTCCGACCAATCTAA-AGTCGC-TGACTTAGTGAAAGAGCACGGTG-TCATTTATGTTC 957
Query 1051 TCGAAGTAGCCAAGTATTATGACAGAACC-ACCCTTCCCATTATTGACCA-GGTGATTGA 1108
| |||||||||||||||||||| || || | |||||||| || | || ||| |||||
Sbjct 958 TTGAAGTAGCCAAGTATTATGAT-GATCCCAATCTTCCCATCATA-AGCAAGGTTATTGA 1015
Query 1109 CACGTTAA-GTAGAA-CTCTAGGTTTC--GCTCCAGGGTTTATGTTCG-TACAAGATGTT 1163
||| |||| | | || || || ||| | || || ||||| || | || | || |||||
Sbjct 1016 CACATTAACGAA-AAGCT-TAAGTTACTTGC-CC-GGGTTCATAT-CGATGCATGATGTC 1070
Query 1164 CCGTATTTCGATTTCTTGAACCGTGTCCGAAA-CGAAGAAGATAAACTCAGATCTTTAGG 1222
|| || |||||||||||||||||||| | || ||||||| | ||||||||||| || ||
Sbjct 1071 CCCTACTTCGATTTCTTGAACCGTGTAC-AAGTCGAAGAAAACAAACTCAGATCATTGGG 1129
Query 1223 ACTATGGGAAGTTCCTCATCCATGGCTTAACATCTTTGTCCCGGGGTCTCGAATCCAAGA 1282
||||||||||||||||||||||||||||| ||| || || ||||| || | ||
Sbjct 1130 GTTATGGGAAGTTCCTCATCCATGGCTTAACCTCTACGTTCCTAAATCTCGGATTCGTGA 1189
Query 1283 TTTTCATGATGGTGTTATTAATGGCCTTCTTCTAAACCAAACCTCAACTTCTGGTGTTAC 1342
||||||||| |||||| | || | | ||||||| || |||| || |||| || | |
Sbjct 1190 TTTTCATGACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAAACAGCTTCGGGACTCGC 1249
Query 1343 TCTCTTCTATCCCACAAACCGAAACAAATGGAACAACCGCATGTCAACGATGACACC-G- 1400
|||| ||||||||||||||||||| |||||| |||| || ||||| |||||| ||| |
Sbjct 1250 TCTCCTCTATCCCACAAACCGAAATAAATGGGACAATCGTATGTCCGCGATGATACCAGA 1309
Query 1401 GA-CGA--A-GATGTTTTTTATGTGATCGGATTACTGCAATCAGCTGGTGGATCTCAAAA 1456
|| ||| | |||||| | ||| | |||||| | || ||||| ||| | | || ||
Sbjct 1310 GATCGATGAAGATGTTATCTATATAATCGGACTGCTACAATCCGCTAC-GC--CACAGAA 1366
Query 1457 TTGGCAAGAACTTGAAAATC-TCAACGACAAGGTTATTCAGTTTTGTGAAA--ACTCGGG 1513
|| || |||| | || | | | ||||| || | ||| || ||| || || | || ||
Sbjct 1367 TTTGCCAGAAATGGAGAG-CGTTAACGAGGAGATAATT-AGGTTT-TGCAAGGATTCAGG 1423
Query 1514 AATTAAGATTAAGGAATATTTGATGCACTATACAAGAAAAGAAGATTGGGTTAAACATTT 1573
|||||||||||| ||||| | ||||| || || ||||||||||||||| || | |||||
Sbjct 1424 TATTAAGATTAAGCAATATCTAATGCATTACACTAGAAAAGAAGATTGGATTGAGCATTT 1483
Query 1574 TGGACCAAAATGGGATGATTTTTT-AAGAAAGAAA-AT-TATGTTTGATCCCAA-AAGAC 1629
|||| |||||||||||||||||| |||| |||| || ||| || |||||||| || ||
Sbjct 1484 TGGATCAAAATGGGATGATTTTTCGAAGAG-GAAAGATCTAT-TT-GATCCCAAGAA-AC 1539
Query 1630 TATTGTCTCCAGGACAAGACATATTTA-ATTAAC 1662
| || ||||||||||||||||| ||| ||||||
Sbjct 1540 TGTTATCTCCAGGACAAGACATCTTTTGATTAAC 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5