BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29750.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value Ahg328739 jgi|Araly1|328739|fgenesh1_pm.C_scaffold_7000966 2348 0.0 > Ahg328739 jgi|Araly1|328739|fgenesh1_pm.C_scaffold_7000966 Length=2328 Score = 2348 bits (1271), Expect = 0.0 Identities = 1350/1389 (97%), Gaps = 2/1389 (0%) Strand=Plus/Plus Query 1062 TGTAGAGGCAAGGGATTACGTACAAGAGGATGGGAATTACCCGAAGAATGTACCTAAAGA 1121 ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| Sbjct 933 TGTAGAGGCAAGGGATTACGTACCTGAGGATGCAAATTACCCCAAGAATGTACCTAAAGA 992 Query 1122 ACAATTATCCGAGCTATGTGAACTGAATGATTTGCTGGACGAGGTTGGTCCAAGGTTTCA 1181 |||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||| Sbjct 993 ACAATTATCCGAGCTATGTGAATTGAATGATTTGTTGGAGGAGCTTGGTCCAAGGTTTCA 1052 Query 1182 TGATTGGACAGGGTGTGCTCCGTTTCCTGTTGATGCAGACTTGCTTCCTGGATACGTTGA 1241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 TGATTGGACAGGGTGTGCTCCGTTTCCTGTTGATGCAGACTTGCTTCCTGGATACGTTGA 1112 Query 1242 AGGATATAGGTGTCCGTTTAGGATTCTTCCGCAAGGAGTAAAACCTTGTTTGTCTAACAC 1301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 AGGATATAGGTGTCCGTTTAGGATTCTTCCGCAAGGAGTAAAACCTTGTTTGTCTAACAC 1172 Query 1302 GGAAATGACAGAAATGCGTCGGCTTGCTAGGACAAGCCCTCCACATTTTGCTCTGGGGAG 1361 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 AGAAATGACAGAAATGCGTCGGCTTGCTAGGACAAGCCCTCCACATTTTGCTCTGGGGAG 1232 Query 1362 GAGCAGAGAGTTACAAGGTCTGGCTAAGGCAATGGTAAAGCTATGGGCAAAAAGTGCGAT 1421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 GAGCAGAGAGTTACAAGGTCTGGCTAAGGCAATGGTAAAGCTATGGGCAAAAAGTGCGAT 1292 Query 1422 CGCCAAAATAGCAATCAAACGCGGTGTAGAAAATACGCGGAATGAGAGAATGGCAGAAGA 1481 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1293 CGCCAAAATAGCAATCAAACGCGGTGTAGAAAATACGCGGAATGAGAGAATGGCGGAAGA 1352 Query 1482 ACTTAAGAGACTTACCCGCGGTGTACTTGTTTCGAGAAACAAGGAGTATATTGTCTTCTA 1541 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 ACTTAAGAGACTTACTCGCGGTGTACTTGTTTCGAGAAACAAGGAGTATATTGTCTTCTA 1412 Query 1542 CAGAGGTAATGACTTCATGCCTCCTGCAGTGGCAGAGGCATTGACCGAGAGGCAAAAGGA 1601 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1413 CAGAGGTAATGACTTCATGCCTCCTGCAGTGGTAGAGGCATTGACCGAGAGGCAAAAGGA 1472 Query 1602 GATAACAGAAGTTCTTCAAGCCAAGGAGGATCAAGCCCGGGAAATGGCTTCAACAAGAGC 1661 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1473 GATAACGGAAGTTCTTCAAATCAAGGAGGATCAAGCCCGGGAAATGGCTTCAACAAGAGT 1532 Query 1662 CACACTCACATCACAAGCCAAATCGCCTAAAACCCAATTACTCGCTGGAACTCTTGCTGA 1721 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1533 CACACTCACATCACAAGCCAAATCGCCTAAAACCCAATTACTCGCTGGAACGCTTGCTGA 1592 Query 1722 GACTATAGCTGCAAGTTCTCGGTGGGCACCAAATGCAAGCAGCGTTGATATTGAGGAGTT 1781 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1593 GACTATAGCTGCAAGTTCTCGGTGGGCACCAGATGCAAGCAGCGTTGATATTGAAGAGTT 1652 Query 1782 AAAGAGAGAATCAGCTTCCATCAAAAGAGCTGCATTGATTAGAGATCTCGAGCTAAGGCT 1841 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1653 AAAGAGAGAATCAGCTTCCATCAAAAGAGCTGCATTGATTAGAGATCTTGAGCTAAGGCT 1712 Query 1842 TCTTTATGGAAAGCAAAAGTTGAGAAGAGCTGAGAGAGATTTAGCTAAAGTGCAGAAGGA 1901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1713 TCTTTATGGAAAGCAAAAGTTGAGAAGAGCTGAGAGAGATTTAGCTAAAGTGCAGAAGGA 1772 Query 1902 TCTTGACCCATCGGAACTCCCAACTGATTCAGAAATAATCACAGAAGAAGAGAGACTTCT 1961 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1773 TCTTGACCCATCAGAACTCCCAACTGATTCAGAAATAATCACAGAAGAAGAGAGACTTCT 1832 Query 1962 TTACCGCAAAATTGGTTTGAGTATGGATCCGTTTCTTCTCTTAGGAAGACGAGAGGTGTA 2021 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1833 TTACCGCAAAATTGGTTTGAGTATGGATCCGTTTCTTCTCTTAGGAAGACGAGAAGTGTA 1892 Query 2022 TGATGGTACCATAGAGAACATGCATTTACACTGGAAACATCGGGAGCTTGTAAAAGTGAT 2081 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1893 TGATGGTACCATAGAGAACATGCATCTACACTGGAAACATCGGGAGCTTGTAAAAGTGAT 1952 Query 2082 AGTTAGAGGCAAATCTCTTCCACAAGTCAAACATATCGCCATCTCTTTGGAGGCTGAGAG 2141 ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| Sbjct 1953 AGTTAGAGGCAAATCTCTTCCGCAAGTCAAACATATCTCTATCTCTTTGGAGGCTGAGAG 2012 Query 2142 TGGAGGAGTATTGGTATCCGTTGATAAAACCATGAAAGGCTATGCGATTATACTCTATCG 2201 ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 2013 TGGCGGAGTATTGGTATCCGTTGATAAAACTATAAAAGGCTATGCGATTATACTCTATCG 2072 Query 2202 CGGAAAGAATTATCAGATGCCATTTCGGCTTAGGCCTTCAAACTTATTGACGAGAAAAAA 2261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2073 CGGAAAGAATTATCAGATGCCATTTCGGCTTAGGCCTTCAAACTTATTGACGAGAAAAAA 2132 Query 2262 GGCTTTTGCTCGATCCATTGAGCTTCAAAGAAGAGAAGCACTGAAGTATCATGTTGCAGA 2321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2133 GGCTTTTGCTCGATCCATTGAGCTTCAAAGAAGAGAAGCACTGAAGTATCATGTTGCAGA 2192 Query 2322 CCTAGAGGAACGGATTGAGCTGTTGAAGACCGGACAGGACGACGATATGGAAACCCG-CA 2380 ||||||||||||||| |||||| |||||||||||||||| ||||||| |||| |||| || Sbjct 2193 CCTAGAGGAACGGATAGAGCTGCTGAAGACCGGACAGGATGACGATAGGGAA-CCCGGCA 2251 Query 2381 ACAAAAGTGATGAAGAGGAAGAGAACTTGTATTTGAGAGTCGATGAATCTGATTTTTCTT 2440 | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2252 AGAAAAGTGATGGAGAGGAAGAAAACTTGTATTTGAGAGTCGATGAATCTGATTTTTCTT 2311 Query 2441 CTGACGAGG 2449 ||||||||| Sbjct 2312 CTGACGAGG 2320 Score = 1378 bits (746), Expect = 0.0 Identities = 871/929 (94%), Gaps = 18/929 (2%) Strand=Plus/Plus Query 1 ATGGCGCTTTGTCAATTCCCACTGAATCTTCACACTATCTCCTCATCAACATCTTCATCT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCGCTGTGTCAATTCCCACTGAATCTTCACACTATCTCCTCATCAACATCTTCGTCT 60 Query 61 CCTCGATTCCGTCGTCTTCAACCTCTAGA-TACCTCTACAAAGCCCAATTTTCTTATTCG 119 |||| |||||||||||||||||||||||| | |||||| |||||| ||||| |||||||| Sbjct 61 CCTCAATTCCGTCGTCTTCAACCTCTAGAGT-CCTCTATAAAGCCTAATTTCCTTATTCG 119 Query 120 TAGACTCAGATTTCATAGCTTCAATCACCCAGTTCGGTTTCACACCCGAGAATTGAGTGT 179 |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 120 TAGACTCAGATTTCGTAGCTTCAATCACCCAATTCGGTTTCACACCCTTGAATTGAGTGT 179 Query 180 CATCACAGCCACCATTGACATCGACACTCACCAGAGGAAGAAGACGAAGAGAAAACCTAA 239 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CATCAGAGCCACCATTGATATCGACACTCACCAGAGGAAGAAGACGAAGAGAAAACCTAA 239 Query 240 ACCAGGTTTTTTCGAAGAAATTAGTGATAAATGGTCTTCACGTATCAGCCCCAAAACCGA 299 ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 240 ACCGGGTTTTTTCGAAGAAATTAGCGATAAATGGTCTTCACGTATCAGCCCTAAAACCGA 299 Query 300 GAAATTGCCATGGCAGAAGCAAGAAGAGCAAATTCAACATCACGAAGACGAAGAAGATGA 359 ||||||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct 300 GAAATTGCCATGGCAGAAGCAAGAAGAGCAAATTCAACATCAC----A--AAGACGAT-- 351 Query 360 GGAAGGAGATGAATCAAGTTCAAATCTTTCTTCTGGGAATGGTTTATCTGATAAGAGAAC 419 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 352 ----GGAGATGAATCAAGATCAAATCTTTCTTCTGGGTATGGTTTATCTGATAAGAGAAC 407 Query 420 CGATTCCAATCGTCTCTATTCGGCGAATGAGCCGTGGAGTTTCCCAAGACCAAGCGGATA 479 |||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 408 CGATTCCAATCGCCTCTATTCAGCGAATGAGCCGTCGACTTTCCCAAGACCAAGCGGATA 467 Query 480 CATGTCTGCTCCATGGGTTAACAATGGTGGGTCTAAAGGTGTTAACTTTACGACTAGCTC 539 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 CATGTCTGCTCCATGGGTTAACAATGGTGGGTCTAAAGGTGTTAACTTTACGACTAGCTT 527 Query 540 CGAGCAAGGAATTCAAAGTTCGAGTTTTCACGATGTTACTACTGTAGATAGATATAGAAG 599 |||||||||| || |||||||||||||| | ||||||| ||| ||||||||||||||||| Sbjct 528 CGAGCAAGGAGTTGAAAGTTCGAGTTTTGATGATGTTATTACGGTAGATAGATATAGAAG 587 Query 600 GGATAACGATTCTAGCGATAGAGCTGTAGATTCAGATTTAGATGATGGTGAAAGAGGGAT 659 ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 588 GGATAACGATTCTAGTAATAGAGGTGTAGATTCAGATTTAGATGATGGTGAAAGAGGGAT 647 Query 660 GATAGATTCAGGGAATA-ATAAGGGAATATGGAGAACGAGGAAGAGTAATACAGTAGAAG 718 ||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||||||| Sbjct 648 GATAGATTCAGGGAA-AGATAAGGGAATATGGAGAACGAGGAGGAGTAATACGGTAGAAG 706 Query 719 CTGAGAGGATTGTACCAGAACATGAGCTGAAAAGGTTGAGGAATGTAGCTTTGAGAATGG 778 |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 707 CTGAGAGGGTTGTACCGGAACATGAGCTGAGAAGGTTGAGGAATGTAGCTTTGAGAATGG 766 Query 779 TTGAGAGAGTAAAAGTAGGTTCTGCAGGAATTACGCAGGCGCTT-GTTGAAGCTATTCAT 837 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 767 TTGAGAGAGTAAAAGTAGGTTCTGCAGGAATTACGCAGGCG-TTAGTTGAAGCTATTCAT 825 Query 838 GAGAAATGGGAGGTTGATGAAGTTGTGAAGTTGAAATTTAGTGAGCCTTATTCTCTTAAT 897 ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 826 GAGAAATGGGAGGTTGATGAAGTTGTGAAGTTGAAATTTGGAGAGCCTTTTTCTCTTAAT 885 Query 898 ATGAAGAGAACTCATGAAGTTTTGGAGAA 926 ||||||||||||||||||||||||||||| Sbjct 886 ATGAAGAGAACTCATGAAGTTTTGGAGAA 914 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103415015175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5