BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29750.1
Length=2741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328739 jgi|Araly1|328739|fgenesh1_pm.C_scaffold_7000966 2348 0.0
> Ahg328739 jgi|Araly1|328739|fgenesh1_pm.C_scaffold_7000966
Length=2328
Score = 2348 bits (1271), Expect = 0.0
Identities = 1350/1389 (97%), Gaps = 2/1389 (0%)
Strand=Plus/Plus
Query 1062 TGTAGAGGCAAGGGATTACGTACAAGAGGATGGGAATTACCCGAAGAATGTACCTAAAGA 1121
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 933 TGTAGAGGCAAGGGATTACGTACCTGAGGATGCAAATTACCCCAAGAATGTACCTAAAGA 992
Query 1122 ACAATTATCCGAGCTATGTGAACTGAATGATTTGCTGGACGAGGTTGGTCCAAGGTTTCA 1181
|||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||
Sbjct 993 ACAATTATCCGAGCTATGTGAATTGAATGATTTGTTGGAGGAGCTTGGTCCAAGGTTTCA 1052
Query 1182 TGATTGGACAGGGTGTGCTCCGTTTCCTGTTGATGCAGACTTGCTTCCTGGATACGTTGA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TGATTGGACAGGGTGTGCTCCGTTTCCTGTTGATGCAGACTTGCTTCCTGGATACGTTGA 1112
Query 1242 AGGATATAGGTGTCCGTTTAGGATTCTTCCGCAAGGAGTAAAACCTTGTTTGTCTAACAC 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 AGGATATAGGTGTCCGTTTAGGATTCTTCCGCAAGGAGTAAAACCTTGTTTGTCTAACAC 1172
Query 1302 GGAAATGACAGAAATGCGTCGGCTTGCTAGGACAAGCCCTCCACATTTTGCTCTGGGGAG 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 AGAAATGACAGAAATGCGTCGGCTTGCTAGGACAAGCCCTCCACATTTTGCTCTGGGGAG 1232
Query 1362 GAGCAGAGAGTTACAAGGTCTGGCTAAGGCAATGGTAAAGCTATGGGCAAAAAGTGCGAT 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GAGCAGAGAGTTACAAGGTCTGGCTAAGGCAATGGTAAAGCTATGGGCAAAAAGTGCGAT 1292
Query 1422 CGCCAAAATAGCAATCAAACGCGGTGTAGAAAATACGCGGAATGAGAGAATGGCAGAAGA 1481
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1293 CGCCAAAATAGCAATCAAACGCGGTGTAGAAAATACGCGGAATGAGAGAATGGCGGAAGA 1352
Query 1482 ACTTAAGAGACTTACCCGCGGTGTACTTGTTTCGAGAAACAAGGAGTATATTGTCTTCTA 1541
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 ACTTAAGAGACTTACTCGCGGTGTACTTGTTTCGAGAAACAAGGAGTATATTGTCTTCTA 1412
Query 1542 CAGAGGTAATGACTTCATGCCTCCTGCAGTGGCAGAGGCATTGACCGAGAGGCAAAAGGA 1601
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1413 CAGAGGTAATGACTTCATGCCTCCTGCAGTGGTAGAGGCATTGACCGAGAGGCAAAAGGA 1472
Query 1602 GATAACAGAAGTTCTTCAAGCCAAGGAGGATCAAGCCCGGGAAATGGCTTCAACAAGAGC 1661
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GATAACGGAAGTTCTTCAAATCAAGGAGGATCAAGCCCGGGAAATGGCTTCAACAAGAGT 1532
Query 1662 CACACTCACATCACAAGCCAAATCGCCTAAAACCCAATTACTCGCTGGAACTCTTGCTGA 1721
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1533 CACACTCACATCACAAGCCAAATCGCCTAAAACCCAATTACTCGCTGGAACGCTTGCTGA 1592
Query 1722 GACTATAGCTGCAAGTTCTCGGTGGGCACCAAATGCAAGCAGCGTTGATATTGAGGAGTT 1781
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1593 GACTATAGCTGCAAGTTCTCGGTGGGCACCAGATGCAAGCAGCGTTGATATTGAAGAGTT 1652
Query 1782 AAAGAGAGAATCAGCTTCCATCAAAAGAGCTGCATTGATTAGAGATCTCGAGCTAAGGCT 1841
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1653 AAAGAGAGAATCAGCTTCCATCAAAAGAGCTGCATTGATTAGAGATCTTGAGCTAAGGCT 1712
Query 1842 TCTTTATGGAAAGCAAAAGTTGAGAAGAGCTGAGAGAGATTTAGCTAAAGTGCAGAAGGA 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TCTTTATGGAAAGCAAAAGTTGAGAAGAGCTGAGAGAGATTTAGCTAAAGTGCAGAAGGA 1772
Query 1902 TCTTGACCCATCGGAACTCCCAACTGATTCAGAAATAATCACAGAAGAAGAGAGACTTCT 1961
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 TCTTGACCCATCAGAACTCCCAACTGATTCAGAAATAATCACAGAAGAAGAGAGACTTCT 1832
Query 1962 TTACCGCAAAATTGGTTTGAGTATGGATCCGTTTCTTCTCTTAGGAAGACGAGAGGTGTA 2021
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1833 TTACCGCAAAATTGGTTTGAGTATGGATCCGTTTCTTCTCTTAGGAAGACGAGAAGTGTA 1892
Query 2022 TGATGGTACCATAGAGAACATGCATTTACACTGGAAACATCGGGAGCTTGTAAAAGTGAT 2081
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1893 TGATGGTACCATAGAGAACATGCATCTACACTGGAAACATCGGGAGCTTGTAAAAGTGAT 1952
Query 2082 AGTTAGAGGCAAATCTCTTCCACAAGTCAAACATATCGCCATCTCTTTGGAGGCTGAGAG 2141
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 1953 AGTTAGAGGCAAATCTCTTCCGCAAGTCAAACATATCTCTATCTCTTTGGAGGCTGAGAG 2012
Query 2142 TGGAGGAGTATTGGTATCCGTTGATAAAACCATGAAAGGCTATGCGATTATACTCTATCG 2201
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2013 TGGCGGAGTATTGGTATCCGTTGATAAAACTATAAAAGGCTATGCGATTATACTCTATCG 2072
Query 2202 CGGAAAGAATTATCAGATGCCATTTCGGCTTAGGCCTTCAAACTTATTGACGAGAAAAAA 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CGGAAAGAATTATCAGATGCCATTTCGGCTTAGGCCTTCAAACTTATTGACGAGAAAAAA 2132
Query 2262 GGCTTTTGCTCGATCCATTGAGCTTCAAAGAAGAGAAGCACTGAAGTATCATGTTGCAGA 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 GGCTTTTGCTCGATCCATTGAGCTTCAAAGAAGAGAAGCACTGAAGTATCATGTTGCAGA 2192
Query 2322 CCTAGAGGAACGGATTGAGCTGTTGAAGACCGGACAGGACGACGATATGGAAACCCG-CA 2380
||||||||||||||| |||||| |||||||||||||||| ||||||| |||| |||| ||
Sbjct 2193 CCTAGAGGAACGGATAGAGCTGCTGAAGACCGGACAGGATGACGATAGGGAA-CCCGGCA 2251
Query 2381 ACAAAAGTGATGAAGAGGAAGAGAACTTGTATTTGAGAGTCGATGAATCTGATTTTTCTT 2440
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2252 AGAAAAGTGATGGAGAGGAAGAAAACTTGTATTTGAGAGTCGATGAATCTGATTTTTCTT 2311
Query 2441 CTGACGAGG 2449
|||||||||
Sbjct 2312 CTGACGAGG 2320
Score = 1378 bits (746), Expect = 0.0
Identities = 871/929 (94%), Gaps = 18/929 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCTTTGTCAATTCCCACTGAATCTTCACACTATCTCCTCATCAACATCTTCATCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGCTGTGTCAATTCCCACTGAATCTTCACACTATCTCCTCATCAACATCTTCGTCT 60
Query 61 CCTCGATTCCGTCGTCTTCAACCTCTAGA-TACCTCTACAAAGCCCAATTTTCTTATTCG 119
|||| |||||||||||||||||||||||| | |||||| |||||| ||||| ||||||||
Sbjct 61 CCTCAATTCCGTCGTCTTCAACCTCTAGAGT-CCTCTATAAAGCCTAATTTCCTTATTCG 119
Query 120 TAGACTCAGATTTCATAGCTTCAATCACCCAGTTCGGTTTCACACCCGAGAATTGAGTGT 179
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 120 TAGACTCAGATTTCGTAGCTTCAATCACCCAATTCGGTTTCACACCCTTGAATTGAGTGT 179
Query 180 CATCACAGCCACCATTGACATCGACACTCACCAGAGGAAGAAGACGAAGAGAAAACCTAA 239
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATCAGAGCCACCATTGATATCGACACTCACCAGAGGAAGAAGACGAAGAGAAAACCTAA 239
Query 240 ACCAGGTTTTTTCGAAGAAATTAGTGATAAATGGTCTTCACGTATCAGCCCCAAAACCGA 299
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 240 ACCGGGTTTTTTCGAAGAAATTAGCGATAAATGGTCTTCACGTATCAGCCCTAAAACCGA 299
Query 300 GAAATTGCCATGGCAGAAGCAAGAAGAGCAAATTCAACATCACGAAGACGAAGAAGATGA 359
||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 300 GAAATTGCCATGGCAGAAGCAAGAAGAGCAAATTCAACATCAC----A--AAGACGAT-- 351
Query 360 GGAAGGAGATGAATCAAGTTCAAATCTTTCTTCTGGGAATGGTTTATCTGATAAGAGAAC 419
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 352 ----GGAGATGAATCAAGATCAAATCTTTCTTCTGGGTATGGTTTATCTGATAAGAGAAC 407
Query 420 CGATTCCAATCGTCTCTATTCGGCGAATGAGCCGTGGAGTTTCCCAAGACCAAGCGGATA 479
|||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 408 CGATTCCAATCGCCTCTATTCAGCGAATGAGCCGTCGACTTTCCCAAGACCAAGCGGATA 467
Query 480 CATGTCTGCTCCATGGGTTAACAATGGTGGGTCTAAAGGTGTTAACTTTACGACTAGCTC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CATGTCTGCTCCATGGGTTAACAATGGTGGGTCTAAAGGTGTTAACTTTACGACTAGCTT 527
Query 540 CGAGCAAGGAATTCAAAGTTCGAGTTTTCACGATGTTACTACTGTAGATAGATATAGAAG 599
|||||||||| || |||||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 528 CGAGCAAGGAGTTGAAAGTTCGAGTTTTGATGATGTTATTACGGTAGATAGATATAGAAG 587
Query 600 GGATAACGATTCTAGCGATAGAGCTGTAGATTCAGATTTAGATGATGGTGAAAGAGGGAT 659
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 588 GGATAACGATTCTAGTAATAGAGGTGTAGATTCAGATTTAGATGATGGTGAAAGAGGGAT 647
Query 660 GATAGATTCAGGGAATA-ATAAGGGAATATGGAGAACGAGGAAGAGTAATACAGTAGAAG 718
||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 648 GATAGATTCAGGGAA-AGATAAGGGAATATGGAGAACGAGGAGGAGTAATACGGTAGAAG 706
Query 719 CTGAGAGGATTGTACCAGAACATGAGCTGAAAAGGTTGAGGAATGTAGCTTTGAGAATGG 778
|||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 707 CTGAGAGGGTTGTACCGGAACATGAGCTGAGAAGGTTGAGGAATGTAGCTTTGAGAATGG 766
Query 779 TTGAGAGAGTAAAAGTAGGTTCTGCAGGAATTACGCAGGCGCTT-GTTGAAGCTATTCAT 837
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 767 TTGAGAGAGTAAAAGTAGGTTCTGCAGGAATTACGCAGGCG-TTAGTTGAAGCTATTCAT 825
Query 838 GAGAAATGGGAGGTTGATGAAGTTGTGAAGTTGAAATTTAGTGAGCCTTATTCTCTTAAT 897
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 826 GAGAAATGGGAGGTTGATGAAGTTGTGAAGTTGAAATTTGGAGAGCCTTTTTCTCTTAAT 885
Query 898 ATGAAGAGAACTCATGAAGTTTTGGAGAA 926
|||||||||||||||||||||||||||||
Sbjct 886 ATGAAGAGAACTCATGAAGTTTTGGAGAA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103415015175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5