BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29760.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135 1147 0.0
Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720 595 1e-169
Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 366 1e-100
> Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135
Length=843
Score = 1147 bits (621), Expect = 0.0
Identities = 774/848 (91%), Gaps = 10/848 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGCGATTATTACAATCTATGTCAAGGGTGGCTGGCCGATGTCATCCAGATTGC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTGAGCGATTATTACAATCTATGTCAAGGGTGGCTGGCCGTTGTCATCCAGATTGC 60
Query 61 GTAAAAGCAAGTGATGAGCAAGAAGATTACCATGCATCTCAAAATGCAGCTTTGGTAGCT 120
|| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 61 GTGAAAGCAAACAATGAGCAAGAAGATTACGATGCATCTCAGTCTGCAGCTTTGGTAGCT 120
Query 121 GTGAATCTGATTAGCTCTGCAAGGTTAATACTGAAACTCGACGCTGAGTTTACTGAGTAC 180
|||||||||||||||||||||||||| || || ||||||||| |||| ||||| ||||||
Sbjct 121 GTGAATCTGATTAGCTCTGCAAGGTTTATGCTCAAACTCGACACTGAATTTACCGAGTAC 180
Query 181 TCAGCTCAGTTTTTGATGGACAATGCTGGAAAGGAAGACGACCCGGGAGAAGTGGATCAA 240
|||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 181 TCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGACCCGGGAGAAATGGATCAA 240
Query 241 CAACGCAATCAGGTCACGACCGAAAACTGCCTTCGCTACTTGGCCGAAAACGTTTGGACC 300
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CAACGCAGTCAGGTCACTACCGAAAACTGCCTTCGCTACTTGGCGGAAAACGTTTGGACC 300
Query 301 AAGAAGGAAAATGGGCAGGGAGGA-ATGGATCAACAACGCCCTGTGCTCACTGTCAAAGA 359
|||| |||| || ||||| ||| | ||||||||||||||| ||||||||||||||| ||
Sbjct 301 AAGAGGGAAGATCGGCAGAGAG-ACATGGATCAACAACGCTGTGTGCTCACTGTCAAGGA 359
Query 360 CTGC-TTGGAACTTGCTTTTAAAAAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGG 418
|||| ||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 360 CTGCCTTG-AACTTGCTTTTAAAAAGGGGCTACCGAGAAGAGAACATTGGGCACATTTGG 418
Query 419 GATGTACCTTCAAGGCTCCCCCATTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAG 478
||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 419 GATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTCCTCGCGTTCCCGTGAAAGGAG 478
Query 479 AAGTGGTTGAGGTTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTG 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 479 AAGTGGTTGAGGCTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAACCGGTGG 538
Query 539 GAGCAAAACTGCATTTGTTCAGTCCGCAGATTGATAATGTTGGAGAGGG-AGTTTACAAA 597
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
Sbjct 539 GAGCAAAACTGCATTTGTTCAGTCCGCAGATTGATCGTGTTGGAGAGGGGA-TTTACGAT 597
Query 598 GGCCTCACGACAGGTAATGAAACACACTATGTTGGACTTAGAGATGTGCTAATAGCTTCA 657
|||| | ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 598 GGCCCCGCGACAAGTAATGAAACATGCTATGTTGGACTTAGAGATGTGCTTATAGGTTCA 657
Query 658 GTGGAGGAGTTCGAGGGAGATTCTGTTGCTATTGTGAAGATCTGCTACAAGAAGAAGCTT 717
|||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 658 GTGGAGAAGTTCGAGGGAGATACTGTTGCTATTGTGAAGATATCCTACAAGAAGAAGCTT 717
Query 718 TCATTTATCAAAGTGTCTTTGAGC-GTTAGGTTTCTCTCAGTAGCACATGATGGTGATAA 776
|||||| ||||||||||| ||| | || | ||||||||||| | ||||| ||||||| |
Sbjct 718 TCATTTGTCAAAGTGTCTCTGACCCGT-ATGTTTCTCTCAGCACCACATAATGGTGACGA 776
Query 777 GTCTAAGTTCATAGCGCCAACAGGTCTGCTTGTTGACTTC-TGTGTCCCGCGCTTATCTA 835
|||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 777 GTCTAAGTTCATAGGGCCAACAGGTCTGCTTGTTGACTTCCT-TGTCCCGCGCTTATCTA 835
Query 836 TCAACTAA 843
||||||||
Sbjct 836 TCAACTAA 843
> Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720
Length=834
Score = 595 bits (322), Expect = 1e-169
Identities = 681/846 (80%), Gaps = 57/846 (7%)
Strand=Plus/Plus
Query 19 CAATCTATGTCA-AGGGTGGCTGGCCGATGTCATCCAGATTGCGTAAAAGCAAGTGATGA 77
||||||||| || || | | ||||| |||||||| |||||||||||||||||| ||||
Sbjct 25 CAATCTATGGCAGAGACTCG-TGGCCTCTGTCATCCGGATTGCGTAAAAGCAAGTAATGA 83
Query 78 GCAAGAAGATTACCATGCATCTCAAAATGCAGCTTTGGTAGCTGTGAATCTGATTAGCTC 137
||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 84 GCAAGAAGATTACGATGCATCTCAACATGCAGCTATGGTAGCAGTGAATCTGATTAGCTC 143
Query 138 TGCA-AGGTTAATACTGAAACTCGACGC--TGAGTTTACTGAGTACTCAGCTCAGTTTTT 194
|||| |||| || || || || ||||| |||| | |||||||||||||||||| |||
Sbjct 144 TGCACGGGTT-ATCCTCAACCTTGACGCTGTGAG-GT-CTGAGTACTCAGCTCAGTATTT 200
Query 195 GATGGACAATGCTGGAAAGGAAGACGACCCGGGAGAAGTGGATCAACAACGCAATCAGGT 254
| |||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||| |
Sbjct 201 GGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCAACAAAGCTCTCAGCT 260
Query 255 CACGACCGAAAAC-TGCCTTC-GCTACT-TGGCCGAAAACGTTTGGACCAAGAAGGAAAA 311
||| ||||||| | ||||| | || | ||| |||||||| |||| ||||| |||| |
Sbjct 261 CACTTTCGAAAACAT-CCTTCAG-TA-TATGGTGGAAAACGTCTGGAACAAGAGGGAAGA 317
Query 312 TGGGCAGGGAGGAATGGATCAACAACGCCCTGTGCTCACTGTCAAAGACTG-CTTGGAAC 370
|| |||||||| || ||| |||| | | ||||| ||||||||||| ||| |||
Sbjct 318 TGTGCAGGGAGAAAGGGAGCAAC-A-------T-CTCACCGTCAAAGACTGCCTT-GAA- 366
Query 371 T-TGCTTTTAAAAAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGGGATGTACCTTC 429
| |||||| || || ||||| |||||||||||||| ||| ||||| |||||||||| |||
Sbjct 367 TGTGCTTTCAAGAATGGGCTACCGAGAAGAGAACATTGGTCACATGTGGGATGTACGTTC 426
Query 430 AAGGCTCCCCCATTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAGAAGTGGTTGAG 489
|||||||| |||||| ||||||| || |||||||| || |||||||||||||| |||||
Sbjct 427 AAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAGAAGTGATTGAG 486
Query 490 GTTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTGGAGCAAAACTG 549
||||| | | ||||||||| | ||||||||| || | ||||| | ||||||| |||
Sbjct 487 ACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGGGAGCAAGACTC 546
Query 550 CATTTGTTCAGTCC-GCAGATTGATAATGTTGGAGA-GGGAGTTTACAAAGGCCTCACGA 607
||||| |||||||| | |||||||| ||||||||| |||| ||||| | || | | ||
Sbjct 547 CATTTATTCAGTCCAG-AGATTGATCGTGTTGGAGAGGGGA-TTTACGATGG-C-C-CGT 601
Query 608 CAGGTAATGAAACACA-CTATGTTGGACTTAGAGATGTGC-TAATAGCTT-CAGTGGAGG 664
|| |||||| | || | |||||||||||||||||||| | | |||| || |||||||
Sbjct 602 CAAGTAATGGATCA-AGCTATGTTGGACTTAGAGATGC-CATGATAG-TTGCAGTGGATA 658
Query 665 AGTTCGAGGGAGA-TTCTGTTGCT-ATTGTGAAGATCTGCTACAAGAAGAAG-CTTTCAT 721
||| ||||| | | || ||||| | | ||| ||||||| |||||||||||| | | |||
Sbjct 659 AGTCCGAGGAAAAATT-TGTTG-TGAAAGTGCAGATCTGTTACAAGAAGAAGACAT-CAT 715
Query 722 TTATCAAAGTGTCTTTGAG-CGTTAGGTTTCTCTCAGTAGCACATGATGGTGAT-A--AG 777
|| ||||||||| | |||| ||| | |||| || ||| | |||||||||| | ||
Sbjct 716 TTGTCAAAGTGTGTATGAGGCGT-ATGTTTGTC-CAG---CT--TGATGGTGATGAGGAG 768
Query 778 TCTAAGTTCATAGCGCCAACAGGTCTGCTTGTTGACTTCTGTGTCCCGCGCTTATCTATC 837
||| || | | || |||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 769 TCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTC 828
Query 838 AACTAA 843
||||||
Sbjct 829 AACTAA 834
> Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721
Length=774
Score = 366 bits (198), Expect = 1e-100
Identities = 387/474 (82%), Gaps = 30/474 (6%)
Strand=Plus/Plus
Query 382 AAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGGGATGTACCTTCAAGGCTCCCCCA 441
|||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378
Query 442 TTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAGAAGTGGTTGAGGTTAAGACTTTT 501
||||||||||| || |||||||| ||| |||||||||||||| ||||| ||||| |||
Sbjct 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438
Query 502 GATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTGGAGCAAAACTGCATTTGTTCAGT 561
||||||||||| ||||||||| ||| ||||| | ||||||| ||| ||||| ||||||
Sbjct 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498
Query 562 CC-GCAGATTGATAATGTTGGAGA-GGGAGTTTACAAAGGCCTCACGACAGGTAATGAAA 619
|| | |||||||| ||||||||| |||| ||||| | || | | || || | |||| |
Sbjct 499 CCAG-AGATTGATCGTGTTGGAGAGGGGA-TTTACGATGG-C-C-CGTCAAGCAATGGAT 553
Query 620 CACA-CTATGTTGGACTTAGAGATGTGC-TAATAGCTT-CAGTGGAGGAGT-TCGAGGGA 675
|| | |||||||||||||||||||| | | |||| || ||||||| ||| | ||||||
Sbjct 554 CA-AGCTATGTTGGACTTAGAGATGC-CATCATAG-TTGCAGTGGATAAGTCT-GAGGGA 609
Query 676 GA-TTCTGTTGCTATTGTGAAGATCTGCTACAAGAAGAAG-CTTTCATTTATCAAAGTGT 733
| || |||||| | ||||||||||| |||||||||||| ||| ||||| |||||||||
Sbjct 610 AAGTT-TGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTT-CATTTGTCAAAGTGT 667
Query 734 CTTTGAG-CGTTAGGTTTCTCTCAGTAGCACATGATGGTGAT-A--AGTCTAAGTTCATA 789
| |||| ||| | |||| || ||| | ||||||||| | ||||| || | | |
Sbjct 668 GTATGAGGCGT-ATGTTTGTC-CAG---CT--TGATGGTGACGAGGAGTCTCAGGTGAAA 720
Query 790 GCGCCAACAGGTCTGCTTGTTGACTTCTGTGTCCCGCGCTTATCTATCAACTAA 843
| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 721 GAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5