BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29770.2
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1 1351 0.0
Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135 671 0.0
Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 383 2e-105
> Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1
Length=1050
Score = 1351 bits (731), Expect = 0.0
Identities = 956/1062 (90%), Gaps = 26/1062 (2%)
Strand=Plus/Plus
Query 108 TGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGGAGTTCATCGCAGATGGAGTCATT 167
|||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 TGAGTTTTCTCTACGCGACGGCGATCTGTGTCTCCGGAGTTAATCGCTGATGGAGTCATT 60
Query 168 GTTAGAATGTTTTGCAA-TCACGGATGGCAAATGTCATCCCGATTGCTTAAAAGCAAACA 226
||| || ||||| || |||| |||| ||||||||| |||||| | ||||||| ||
Sbjct 61 ATTACAAACTTTTG-AAGAAACGGCTGGCTTATGTCATCCAGATTGCGTGAAAGCAAGCA 119
Query 227 ATGAGCAAGAAGATTACGATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTA 286
|||||||||||||||||||||||| |||||||||||||||| |||| | |||| ||||||
Sbjct 120 ATGAGCAAGAAGATTACGATGCATCTCAATCTGCAGCTTTGATAGCGGCGAGTCTGATTA 179
Query 287 GCTCTGCACGTGTTATCTTCAAGATCGACTCTAAGTATACTGAGTACTCACCTCAGTATT 346
|||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 180 GCTCTGCACGGGTTATCTTCAAGCTCGACTCTGAGTATACTGAGTACTCAGCTCAGTATT 239
Query 347 TGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCAACCAAGCTGTCAGT 406
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCAACAAAGCTGTCAGT 299
Query 407 ACACTGTCGGAAACCTCCTTAGTTACTTGGTGGAAAACGTTTGGACCAAGAAGGAAGTTA 466
||||||| | |||||||||| | ||||||||||| |||||||||| ||||||||||| |
Sbjct 300 ACACTGTTGAAAACCTCCTTCGGTACTTGGTGGAGAACGTTTGGATCAAGAAGGAAGATG 359
Query 467 GGCAGAGAGAAATGGATCAACAACGCCGTGAGTTCACTGTCAAAGACTGCTTTGAATTTG 526
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GGCAGGGAGAAATGGATCAACAACGCCGTGAGTTCACTGTGAAAGACTGCTTTGAATTTG 419
Query 527 CTTTTAAAAAAGGGCTTCCAAGAAATG-GACATTGGGCGCATGTGGGATGTATATTCCCG 585
|||||||||||||||||||||||| || | |||||||||||||||||||| | ||| |
Sbjct 420 CTTTTAAAAAAGGGCTTCCAAGAAGTGTG-CATTGGGCGCATGTGGGATGCACGTTCAAG 478
Query 586 GTTCCTCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCT 645
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCTCCCCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCT 538
Query 646 GCAAATGTGAGTGAAGCGTTGAAGCTGGGTATGCAACAACCAGCGGCAGCAAGGCTGCAT 705
|| || || ||||||| ||||||||||||||||||||||||| || ||||||| |||||
Sbjct 539 ACAGATTTGGGTGAAGCATTGAAGCTGGGTATGCAACAACCAGTGGGAGCAAGGTTGCAT 598
Query 706 TTGTTCAGTCCAGAGTTTGATCTTGTTGGAGAGGGTATTTACGATGGCCCGTCAGGTAAT 765
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 599 GTGTTCAGTCCAGAGTTTGATAGTGTTGGAGAGGGAATTTACGATGGGCCGTCAGGTAAT 658
Query 766 GAAACACGATATGTTGGACTTAGAGATGTGCTCATGGTTGAGGCGGAGAAGATCAAGGGA 825
| |||| | |||||||| |||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 659 GGAACAAGCTATGTTGGCCTTAGAGATGTGATCATGGTTGAAGCGGAGAGGATCAAGGGA 718
Query 826 GAAACTGTTTTTACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 885
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAAACTGTTGTGACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 778
Query 886 ACGAGAAGTATGATTCTCCCGCTTAATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCA 945
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 779 ACGAGAAGTATGATTCTCCCGCTTAACGGTGACGACGAGTCTCAGGTCAGAGAGCCAACA 838
Query 946 TGTCTACTTGTTGACTTCTGTATCCCACGTTTTTCTATCAACTAACCAAGTGAGCTGAGA 1005
||||| |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||
Sbjct 839 TGTCTGCTTGTTGACTTCTGTATCCCACGTTTCTCTATTAACTAAACAAGAGAGCTGAGA 898
Query 1006 TCTTGGTAAGTATCTGGAGAAGTTTATGCTAGTT-TGT--C--GTT-------CCTATAT 1053
||||||||||||||||||||| |||||| ||||| || | ||| |||||||
Sbjct 899 TCTTGGTAAGTATCTGGAGAACTTTATGGTAGTTGTGGAACCTGTTTGTTAGTCCTATAT 958
Query 1054 TAAGAATGTTTTATCAGACTTATATTTTATGTTTAAGAAGTGAAGTATCTTGAAAACCGT 1113
||||||||||||||||||||||| ||| |||||||| | | | |||||||||| |
Sbjct 959 TAAGAATGTTTTATCAGACTTAT-TTTC-TGTTTAAG---T-A--T--CTTGAAAACCTT 1008
Query 1114 ATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAATTAAGATT 1155
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAATTAAGATT 1050
> Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135
Length=843
Score = 671 bits (363), Expect = 0.0
Identities = 672/816 (82%), Gaps = 42/816 (5%)
Strand=Plus/Plus
Query 199 TGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGATGCATGTCAATCT 258
|||||||| |||||| | |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 46 TGTCATCCAGATTGCGTGAAAGCAAACAATGAGCAAGAAGATTACGATGCATCTCAGTCT 105
Query 259 GCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACGTGTT-AT-CTTCAAGA-TCGAC 315
||||||||||||||||||| | |||||||||||||| | ||| || || ||| | |||||
Sbjct 106 GCAGCTTTGGTAGCTGTGAATCTGATTAGCTCTGCAAG-GTTTATGCT-CAA-ACTCGAC 162
Query 316 TCT-AAGTATACTGAGTACTCACCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGAAGT 374
|| || | ||| ||||||||| |||||| |||| ||||||||| ||| |||||||| |
Sbjct 163 ACTGAATT-TACCGAGTACTCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGA 221
Query 375 TGAGGGAGAAATGGATCAACCAA-GCTGTCAG-TACACTGTCGGAAACCT-CCTTAGTTA 431
||||||||||||||||| || || ||||| | |||| || |||| | |||| | ||
Sbjct 222 CCCGGGAGAAATGGATCAAC-AACGCAGTCAGGT-CACTACCGAAAAC-TGCCTTCGCTA 278
Query 432 CTTGGTGGAAAACGTTTGGACCAAGAAGGAAGTTAGGCAGAGAGAAATGGATCAACAACG 491
||||| |||||||||||||||||||| ||||| | |||||||||| ||||||||||||||
Sbjct 279 CTTGGCGGAAAACGTTTGGACCAAGAGGGAAGATCGGCAGAGAGACATGGATCAACAACG 338
Query 492 CCGTGAGTTCACTGTCAAAGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAA- 550
| ||| | |||||||||| |||||| ||||| ||||||||||||| ||||| || ||||
Sbjct 339 CTGTGTGCTCACTGTCAAGGACTGCCTTGAACTTGCTTTTAAAAAGGGGCTACCGAGAAG 398
Query 551 ATGGACATTGGGCGCATGTGGGATGTATATTCCCGGTTCCTCCATTTGCTTGTCAAATAC 610
| | ||||||||| ||| ||||||||| ||| || ||| ||||||||||||||||| |
Sbjct 399 A-GAACATTGGGCACATTTGGGATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTC 457
Query 611 CTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTGCAA-A-TGT-GAGTGAAGCGTTGA 667
||||||||||| |||||||||||||| |||||||| || | | | || |||||| || |
Sbjct 458 CTCGCGTTCCCGTGAAAGGAGAAGTGGTTGAGGCT--AAGACTTTTGA-TGAAGCATTCA 514
Query 668 AGCTG--GGTATGCAACAACCAGCGGCAGCAAGGCTGCATTTGTTCAGTCCAG-AGTTTG 724
||||| ||| ||| ||||| | || ||||| ||||||||||||||||| | || |||
Sbjct 515 AGCTGTTGGT--GCATCAACCGGTGGGAGCAAAACTGCATTTGTTCAGTCC-GCAGATTG 571
Query 725 ATCTTGTTGGAGAGGGTATTTACGATGGCCC-GT--CAGGTAATGAAACACGATATGTTG 781
||| |||||||||||| |||||||||||||| | || ||||||||||| | |||||||
Sbjct 572 ATCGTGTTGGAGAGGGGATTTACGATGGCCCCGCGACAAGTAATGAAACATGCTATGTTG 631
Query 782 GACTTAGAGATGTGCTCAT-GGTTGAGGCGGAGAAGATCAAGGGAGAAACTGTTTTTACT 840
|||||||||||||||| || |||| || ||||||| || ||||||| |||||| || |
Sbjct 632 GACTTAGAGATGTGCTTATAGGTTCAGT-GGAGAAGTTCGAGGGAGATACTGTTGCTATT 690
Query 841 GTGCAGATATGCTACAAGAAGAAGACTT-CATTTGTCAAAGTGTCTAC-GAGAAGTATGA 898
||| |||||| ||||||||||||| ||| ||||||||||||||||| | || |||||
Sbjct 691 GTGAAGATATCCTACAAGAAGAAG-CTTTCATTTGTCAAAGTGTCT-CTGACCCGTATGT 748
Query 899 TTCTCCC-GCTT-A-ATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCATGTCTACTTG 955
||||| | || | || || ||||||||| || ||| || |||| || |||| ||||
Sbjct 749 TTCTCTCAGCACCACATAATGGTGACGAGTCTAAGTTCATAGGGCCAACAGGTCTGCTTG 808
Query 956 TTGACTTC-TGTATCCCACGTTTTTCTATCAACTAA 990
|||||||| | | |||| || || ||||||||||||
Sbjct 809 TTGACTTCCT-TGTCCCGCGCTTATCTATCAACTAA 843
> Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721
Length=774
Score = 383 bits (207), Expect = 2e-105
Identities = 382/465 (82%), Gaps = 18/465 (4%)
Strand=Plus/Plus
Query 535 AAAGGGCTTCCAAGAA-ATGGACATTGGGCGCATGTGGGATGTATATTCCCGGTTCCTCC 593
|||||||| || |||| | | ||||||||| ||||||||||||| ||| || ||| ||
Sbjct 319 AAAGGGCTACCGAGAAGA-GAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACC 377
Query 594 ATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTGCAA-A-T 651
|||||||||||| || |||||||| || ||||||||||||||||||||| || || | |
Sbjct 378 ATTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACT--AAGAGT 435
Query 652 GT-GAGTGAAGCGTTGAAGCTGGGT-ATGCAACAACCAGCGGCAGCAAGGCTGCATTTGT 709
| || |||||| |||||||| | | | ||||||||| | || |||||| || ||||| |
Sbjct 436 TTGGA-TGAAGCATTGAAGCT-GTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTAT 493
Query 710 TCAGTCCAGAGTTTGATCTTGTTGGAGAGGGTATTTACGATGGCCCGTCAGGTAATGAAA 769
||||||||||| |||||| |||||||||||| |||||||||||||||||| | |||| |
Sbjct 494 TCAGTCCAGAGATTGATCGTGTTGGAGAGGGGATTTACGATGGCCCGTCAAGCAATGGAT 553
Query 770 CACGATATGTTGGACTTAGAGATGTGC-TCATGGTTG-AGGCGGAGAAGATC-AAGGGAG 826
|| | ||||||||||||||||||| | |||| |||| | | ||| ||| || |||||
Sbjct 554 CAAGCTATGTTGGACTTAGAGATG-CCATCATAGTTGCA-GTGGATAAG-TCTGAGGGA- 609
Query 827 AA-ACTGTTTTTACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 885
|| |||| || ||| |||| || ||||||||||||||||||||||||||||||| |
Sbjct 610 AAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGTGT 669
Query 886 ACGAGAAGTATGATTCTCCCGCTTAATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCA 945
| ||| ||||| || ||| |||| |||||||||| ||||||||||| | ||||||| ||
Sbjct 670 ATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAACA 729
Query 946 TGTCTACTTGTTGACTTCTGTATCCCACGTTTTTCTATCAACTAA 990
|||| ||||||||||||||||||||||| || ||| ||||||||
Sbjct 730 GGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5