BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29800.2 Length=1696 Score E Sequences producing significant alignments: (Bits) Value Ahg491780 jgi|Araly1|491780|fgenesh2_kg.7__1213__AT4G29800.1 2523 0.0 > Ahg491780 jgi|Araly1|491780|fgenesh2_kg.7__1213__AT4G29800.1 Length=1608 Score = 2523 bits (1366), Expect = 0.0 Identities = 1534/1615 (95%), Gaps = 11/1615 (1%) Strand=Plus/Plus Query 38 ATGAATCGGCGCTACGA-AAAGCCACCGCCATTGTCAGTTTCCTCCAAAGGGAAGAAGAA 96 ||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGAATCGGCGCTACGATAAA-CCGCCGCCATTGTCAGTTTCCTCCAAGGGGAAGAAGAA 59 Query 97 GCATTTTGTCAATCACACAGCTCCCAACACTCCTGGAAATTACGAGAGGACTCAAACCAG 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GCATTTTGTCAATCACACAGCTCCCAACACTCCTGGAAATTACGAGAGGACTCAAACCAG 119 Query 157 TCCAACGTTATCAACGGCTCGATCACACGAACCCGATGATAAGCTCAATTACGAGATCTT 216 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 120 TCCAACGTTATCAACGACTCGATCTCACGAACCCGATGATAAGCTCAATTACGAGATCTT 179 Query 217 CTCAATTCTCGAAAGCAAATTTCTCTTTGGTTACGAAGACCCAAGGCTACTATGGATTCC 276 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 CTCGATTCTCGAAAGCAAATTTCTCTTCGGTTACGAAGACCCAAGGCTACTATGGATTCC 239 Query 277 TCAGAGTCCATTACGACCCGGTGATTCCGAAGCAGGTCCTTCTCCCAGATCACCGTTGAC 336 || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 240 TCGGAGTCCATTACGACCCGGTGATTCCGAAGCAGGTCCTTCTCCGAGATCTCCGTTGAC 299 Query 337 TCCAAACGGCGTCGTTCTCCCGGGAACACCGTCTTCATC-TTTCAGAAGTCCGAGAGGAA 395 ||||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||||| Sbjct 300 TCCAAACGGCGTCGTTCTCCCAGGAACACCGTCTTCATCGTTT-AGAAGTCCAAGAGGAA 358 Query 396 GAATCTGCGTTTTGAGCATTGACGGTGGCGGTATGAGAGGTCTTTTGGCGGGAAAATCCC 455 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 359 GAATCTGTGTTTTGAGCATTGACGGTGGCGGAATGAGAGGTCTTTTGGCGGGAAAATCCC 418 Query 456 TAATCTAT-TTAGAGCAAATGCTGAAAGAGAAATCCGGCGATCCAAACGCTCGAATCGCC 514 |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TAATCTATCTT-GAGCAGATGCTGAAAGAGAAATCCGGCGATCCAAACGCTCGAATCGCA 477 Query 515 GATTACTTCGACGTCGCTGCCGGATCAGGTGTCGGTGGAGTATTCGCTGCGATGATATTT 574 ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 478 GATTACTTCGACGTCGCTGCCGGATCAGGAGTCGGCGGAGTCTTCGCGGCGATGATATTC 537 Query 575 GCGACAAGAGACGGCAACCGCCCGATTTTCAAGGCGGAGGACACTTGGAAATTTCTCGTA 634 ||||| |||||||| ||||||||||||||||| || || |||||||||||||| ||||| Sbjct 538 GCGACTAGAGACGGTAACCGCCCGATTTTCAAAGCCGAAGACACTTGGAAATTCCTCGTC 597 Query 635 GAGAACGCAGAAGGATTCTACAGATCAGG-GAGCGGAAGTGGAGGAGGAGGAGCAGGAGC 693 || ||||| || ||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 598 GAAAACGCCGAGGGATTCTACAGATCAGGCG-GCGGAAGTGGAGGAGGAGGAGCAGGAGC 656 Query 694 GGCGATTAAACGGGTCATAAGATCTGGATCCGGATCCGGATCATCTTCAGTAACCGCCGC 753 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 AGCGATAAAACGGGTCATAAGATCTGGATCCGGATCCGGATCATCTTCAGTAACCGCCGC 716 Query 754 AACGGCGAAGCTAGAAAAAGCAATGAAAGCATCATTCGCCGATCTAACGCTTAAAGACAC 813 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AACGGCAAAGCTAGAAAAAGCAATGAAAGCATCATTCGCCGATCTAACGCTTAAAGACAC 776 Query 814 ACTCAAACCAATTCTCATCTCTTGCTACGATCTCTCAAGCACGGCTCCGTTTCTATTCTC 873 |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 777 ACTCAAACCAATCCTCATCTCTTGCTACGATCTCTCAAGTACGGCGCCGTTTCTATTCTC 836 Query 874 ACGCGCCGACGCGTTAGAAAGCGACAGTTTCGATTTTCGTCTCCGAGATATTTGCCGTGC 933 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 837 ACGCGCCGACGCGTTAGAAAGCGACAGTTTCGATTTCCGTCTCCGAGATATTTGCCGCGC 896 Query 934 CACATGGGCGGAGCCGGGGACGTTTGATCCGGTTCGCACGTGTTCCGTCGACGGGAAAAC 993 ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 897 CACGTGGGCAGAGCCGGGGACGTTTGATCCGGTTCGCACGTGTTCCGTTGACGGGAAAAC 956 Query 994 GCGGTGCGTTGCGGTGGGGGGTGGATTAGCGATGAGTAATCCGACGGCGGCGGCGATAAC 1053 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 957 GCGGTGCGTTGCGGTGGGAGGTGGATTAGCGATGAGTAATCCGACGGCGGCGGCGATAAC 1016 Query 1054 GCACGTGTTTCATAACAAACAGGAGTTCCCGGCGGTGAAAGGAGTGGAGGATTTGTTGGT 1113 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1017 GCACGTGTTTCATAACAAACAGGAGTTTCCGGCGGTGAAAGGAGTGGAGGATTTGTTGGT 1076 Query 1114 GTTGTCGCTTGGGACTGGTCAGCTTTTTGAAGTGAATTATGATTATGAACAGGTTAAGAA 1173 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1077 GTTGTCGCTTGGAACTGGTCAGCTTTTTGAAGTGAATTATGATTATGAGCAGGTTAAGAA 1136 Query 1174 TTGGCGCGTTAAGGAATGGGCTCGGCCCATGGCGAGAATCTCTGGTGATGGGTCTGCTGA 1233 |||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1137 TTGGCGGGTTAAAGAATGGGCTCGGCCCATGGCGAGGATCTCTGGTGATGGATCTGCTGA 1196 Query 1234 GTTTGTTGATCAAGCTGTTGCTATGGGCTTTGGGCCTTACCGAAGTAGTAATTACGTTCG 1293 |||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1197 GTTTGTTGATCAGGCTGTTGCTATGGGCTTTGGGCCTTATCGGAGTAGTAATTACGTTCG 1256 Query 1294 CATTCAGCAGGCAAATGGATCGCGATTAGGAGCTTGTGGACCGAACGTGGACACGGATCC 1353 ||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1257 CATTCAG--G-CAAATGGATCGCGATTAGGAGCATGTGGACCGAACGTGGACACAGATCC 1313 Query 1354 AAGAGCAGAGAATGTGAAGAAACTGACGGAGATAGCTGATGAGATGTTGAAGCAAAACAA 1413 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1314 AAGAGCAGAGAATGTGAAGAAACTGACGGAGATCGCTGATGAGATGTTGAAGCAAAACAA 1373 Query 1414 TGTGGAGTCGGTTTTGTTCGGAAGCAAAAGGATAGGAGAAATGAGCAATTCAGAGAAAAT 1473 |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| | Sbjct 1374 TGTGGAATCGGTTTTGTTCGGAAGCAAAAGGATCGGAGAAATGAGTAATTCAGAGAAACT 1433 Query 1474 AGAGTGGTTTGCGAGCGAGCTTGTCATTGAGCAGCAGCGACGAAGTGTTAGAGCGTCTCC 1533 ||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1434 AGAGTGGTTCGCGAGTGAGCTGGTCATTGAGCAGCAGCGACGAAGTGTCAGAGCGTCTCC 1493 Query 1534 AACCGTAACGCTAAAGCAAGCTGTGTCCAAAACTAACCGCAATGCTATAAACGCAACTCT 1593 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 1494 AACCGTAACGCTAAAGCAAGCTGTGTCCAAAACCAACCGCAACGCTATAAACGCTACTCT 1553 Query 1594 CACTCTCATATCTAAAGATAGATGAAAACACCTGTTTTTGGTGCTTCCTATTGGT 1648 |||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| Sbjct 1554 CACTCTCATATCTAAAGAAAGATGAAAACATCTTTTTTTAGTGCTTCCTATTGGT 1608 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63610709150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5