BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29800.2
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491780 jgi|Araly1|491780|fgenesh2_kg.7__1213__AT4G29800.1 2523 0.0
> Ahg491780 jgi|Araly1|491780|fgenesh2_kg.7__1213__AT4G29800.1
Length=1608
Score = 2523 bits (1366), Expect = 0.0
Identities = 1534/1615 (95%), Gaps = 11/1615 (1%)
Strand=Plus/Plus
Query 38 ATGAATCGGCGCTACGA-AAAGCCACCGCCATTGTCAGTTTCCTCCAAAGGGAAGAAGAA 96
||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAATCGGCGCTACGATAAA-CCGCCGCCATTGTCAGTTTCCTCCAAGGGGAAGAAGAA 59
Query 97 GCATTTTGTCAATCACACAGCTCCCAACACTCCTGGAAATTACGAGAGGACTCAAACCAG 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCATTTTGTCAATCACACAGCTCCCAACACTCCTGGAAATTACGAGAGGACTCAAACCAG 119
Query 157 TCCAACGTTATCAACGGCTCGATCACACGAACCCGATGATAAGCTCAATTACGAGATCTT 216
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 TCCAACGTTATCAACGACTCGATCTCACGAACCCGATGATAAGCTCAATTACGAGATCTT 179
Query 217 CTCAATTCTCGAAAGCAAATTTCTCTTTGGTTACGAAGACCCAAGGCTACTATGGATTCC 276
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CTCGATTCTCGAAAGCAAATTTCTCTTCGGTTACGAAGACCCAAGGCTACTATGGATTCC 239
Query 277 TCAGAGTCCATTACGACCCGGTGATTCCGAAGCAGGTCCTTCTCCCAGATCACCGTTGAC 336
|| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 240 TCGGAGTCCATTACGACCCGGTGATTCCGAAGCAGGTCCTTCTCCGAGATCTCCGTTGAC 299
Query 337 TCCAAACGGCGTCGTTCTCCCGGGAACACCGTCTTCATC-TTTCAGAAGTCCGAGAGGAA 395
||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||
Sbjct 300 TCCAAACGGCGTCGTTCTCCCAGGAACACCGTCTTCATCGTTT-AGAAGTCCAAGAGGAA 358
Query 396 GAATCTGCGTTTTGAGCATTGACGGTGGCGGTATGAGAGGTCTTTTGGCGGGAAAATCCC 455
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 GAATCTGTGTTTTGAGCATTGACGGTGGCGGAATGAGAGGTCTTTTGGCGGGAAAATCCC 418
Query 456 TAATCTAT-TTAGAGCAAATGCTGAAAGAGAAATCCGGCGATCCAAACGCTCGAATCGCC 514
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAATCTATCTT-GAGCAGATGCTGAAAGAGAAATCCGGCGATCCAAACGCTCGAATCGCA 477
Query 515 GATTACTTCGACGTCGCTGCCGGATCAGGTGTCGGTGGAGTATTCGCTGCGATGATATTT 574
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 478 GATTACTTCGACGTCGCTGCCGGATCAGGAGTCGGCGGAGTCTTCGCGGCGATGATATTC 537
Query 575 GCGACAAGAGACGGCAACCGCCCGATTTTCAAGGCGGAGGACACTTGGAAATTTCTCGTA 634
||||| |||||||| ||||||||||||||||| || || |||||||||||||| |||||
Sbjct 538 GCGACTAGAGACGGTAACCGCCCGATTTTCAAAGCCGAAGACACTTGGAAATTCCTCGTC 597
Query 635 GAGAACGCAGAAGGATTCTACAGATCAGG-GAGCGGAAGTGGAGGAGGAGGAGCAGGAGC 693
|| ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 598 GAAAACGCCGAGGGATTCTACAGATCAGGCG-GCGGAAGTGGAGGAGGAGGAGCAGGAGC 656
Query 694 GGCGATTAAACGGGTCATAAGATCTGGATCCGGATCCGGATCATCTTCAGTAACCGCCGC 753
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGCGATAAAACGGGTCATAAGATCTGGATCCGGATCCGGATCATCTTCAGTAACCGCCGC 716
Query 754 AACGGCGAAGCTAGAAAAAGCAATGAAAGCATCATTCGCCGATCTAACGCTTAAAGACAC 813
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AACGGCAAAGCTAGAAAAAGCAATGAAAGCATCATTCGCCGATCTAACGCTTAAAGACAC 776
Query 814 ACTCAAACCAATTCTCATCTCTTGCTACGATCTCTCAAGCACGGCTCCGTTTCTATTCTC 873
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 777 ACTCAAACCAATCCTCATCTCTTGCTACGATCTCTCAAGTACGGCGCCGTTTCTATTCTC 836
Query 874 ACGCGCCGACGCGTTAGAAAGCGACAGTTTCGATTTTCGTCTCCGAGATATTTGCCGTGC 933
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 837 ACGCGCCGACGCGTTAGAAAGCGACAGTTTCGATTTCCGTCTCCGAGATATTTGCCGCGC 896
Query 934 CACATGGGCGGAGCCGGGGACGTTTGATCCGGTTCGCACGTGTTCCGTCGACGGGAAAAC 993
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 897 CACGTGGGCAGAGCCGGGGACGTTTGATCCGGTTCGCACGTGTTCCGTTGACGGGAAAAC 956
Query 994 GCGGTGCGTTGCGGTGGGGGGTGGATTAGCGATGAGTAATCCGACGGCGGCGGCGATAAC 1053
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCGGTGCGTTGCGGTGGGAGGTGGATTAGCGATGAGTAATCCGACGGCGGCGGCGATAAC 1016
Query 1054 GCACGTGTTTCATAACAAACAGGAGTTCCCGGCGGTGAAAGGAGTGGAGGATTTGTTGGT 1113
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 GCACGTGTTTCATAACAAACAGGAGTTTCCGGCGGTGAAAGGAGTGGAGGATTTGTTGGT 1076
Query 1114 GTTGTCGCTTGGGACTGGTCAGCTTTTTGAAGTGAATTATGATTATGAACAGGTTAAGAA 1173
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1077 GTTGTCGCTTGGAACTGGTCAGCTTTTTGAAGTGAATTATGATTATGAGCAGGTTAAGAA 1136
Query 1174 TTGGCGCGTTAAGGAATGGGCTCGGCCCATGGCGAGAATCTCTGGTGATGGGTCTGCTGA 1233
|||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1137 TTGGCGGGTTAAAGAATGGGCTCGGCCCATGGCGAGGATCTCTGGTGATGGATCTGCTGA 1196
Query 1234 GTTTGTTGATCAAGCTGTTGCTATGGGCTTTGGGCCTTACCGAAGTAGTAATTACGTTCG 1293
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1197 GTTTGTTGATCAGGCTGTTGCTATGGGCTTTGGGCCTTATCGGAGTAGTAATTACGTTCG 1256
Query 1294 CATTCAGCAGGCAAATGGATCGCGATTAGGAGCTTGTGGACCGAACGTGGACACGGATCC 1353
||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1257 CATTCAG--G-CAAATGGATCGCGATTAGGAGCATGTGGACCGAACGTGGACACAGATCC 1313
Query 1354 AAGAGCAGAGAATGTGAAGAAACTGACGGAGATAGCTGATGAGATGTTGAAGCAAAACAA 1413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1314 AAGAGCAGAGAATGTGAAGAAACTGACGGAGATCGCTGATGAGATGTTGAAGCAAAACAA 1373
Query 1414 TGTGGAGTCGGTTTTGTTCGGAAGCAAAAGGATAGGAGAAATGAGCAATTCAGAGAAAAT 1473
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 1374 TGTGGAATCGGTTTTGTTCGGAAGCAAAAGGATCGGAGAAATGAGTAATTCAGAGAAACT 1433
Query 1474 AGAGTGGTTTGCGAGCGAGCTTGTCATTGAGCAGCAGCGACGAAGTGTTAGAGCGTCTCC 1533
||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1434 AGAGTGGTTCGCGAGTGAGCTGGTCATTGAGCAGCAGCGACGAAGTGTCAGAGCGTCTCC 1493
Query 1534 AACCGTAACGCTAAAGCAAGCTGTGTCCAAAACTAACCGCAATGCTATAAACGCAACTCT 1593
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1494 AACCGTAACGCTAAAGCAAGCTGTGTCCAAAACCAACCGCAACGCTATAAACGCTACTCT 1553
Query 1594 CACTCTCATATCTAAAGATAGATGAAAACACCTGTTTTTGGTGCTTCCTATTGGT 1648
|||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 1554 CACTCTCATATCTAAAGAAAGATGAAAACATCTTTTTTTAGTGCTTCCTATTGGT 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63610709150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5