BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29810.2
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491777 jgi|Araly1|491777|fgenesh2_kg.7__1210__AT4G29810.2 2158 0.0
> Ahg491777 jgi|Araly1|491777|fgenesh2_kg.7__1210__AT4G29810.2
Length=1394
Score = 2158 bits (1168), Expect = 0.0
Identities = 1314/1384 (95%), Gaps = 12/1384 (1%)
Strand=Plus/Plus
Query 25 GACGATGAAGAAAGGTGGATTCAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGA 84
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 13 GACGATGAAGAAAGGTGGATTTAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGA 72
Query 85 GCAATCCATCACCAAATTCCTGAGGAAAGGTTTTGGTTCTCTCTGTAGGACTCAAAGCGG 144
|||||| ||||||||||||||| ||||| ||||| |||||||||||||||| || |||||
Sbjct 73 GCAATCTATCACCAAATTCCTGCGGAAATGTTTTTGTTCTCTCTGTAGGACGCAGAGCGG 132
Query 145 TACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATT 204
|||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 133 TACGTTTAAGGATGGAGATCTACGAGTTAACAAAGATGGAGTTCGAATTATCTCTCAATC 192
Query 205 GGAGCCTGAAGTCCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTT 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 193 GGAGCCTGAAGTCCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCCGATTT 252
Query 265 GGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAA 324
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 253 GGATATGGTTAAAGTCATTGGCAAAGGAAGCAGTGGTGTTGTTCAGTTGGTTCAACACAA 312
Query 325 ATGGACTGGCCAATTTTTCGCCTTGAAGGTCATTCAACTAAATATTGATGAAGCAATTCG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 ATGGACTGGCCAATTTTTCGCCTTGAAGGTCATTCAACTAAATATTGATGAAGCAATTCG 372
Query 385 CAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCGTCACAGTGTCCAAATCTTGTTAC 444
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 373 CAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCCTCACAGTGTCCAAATCTTGTTAC 432
Query 445 CTCGTACCAGTCATTTTATGACAATGGCGCAATCTCACTAATCTTGGAGTACATGGACGG 504
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 433 CTCGTACCAGTCATTTTATGACAATGGTGCAATCTCACTAATCTTGGAGTACATGGATGG 492
Query 505 AGGATCTCTAGCAGACTTTCTCAAGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGC 564
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 493 AGGATCTCTAGCAGACTTTCTCAAATCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGC 552
Query 565 CATCTTTAGACAAGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCA 624
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 553 CATCTTTAGACAAGTGCTTCAAGGATTGATCTATCTTCATCACGATAGGCATATCATCCA 612
Query 625 TCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAATAACTGA 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAATAACTGA 672
Query 685 CTTTGGTGTGAGTACCGTTATGACAAACACCGCAGGTTTAGCAAACACATTTGTGGGGAC 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CTTTGGTGTGAGTACCGTTATGACAAACACCGCAGGTTTAGCAAACACATTTGTGGGGAC 732
Query 745 TTACAATTATATGTCTCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATAT 804
|||||||||||||||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct 733 TTACAATTATATGTCTCCAGAGCGAATCGTTGGAAACAAGTACAGTAACAAAAGTGATAT 792
Query 805 ATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCACCTCC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 ATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCACCTCC 852
Query 865 GAATCAAGAGGAAACATGGACCAGTGTTTTCGAGTTGATGGAAGCCATTGTTGACCAACC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GAATCAAGAGGAAACATGGACCAGTGTTTTCGAGTTGATGGAAGCCATTGTTGACCAACC 912
Query 925 GCCACCCGCTCTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GCCACCCGCTCTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATG 972
Query 985 TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGGAACATCCTTTCTT 1044
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 973 TTTGCAAAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTAATGGAACATCCTTTCTT 1032
Query 1045 GAACAAATACGACTACTCGGGGATCAATCTCGCGTCCTACTTCACAGATGCAGGATCGCC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GAACAAATACGACTACTCGGGGATCAATCTCGCGTCCTACTTCACAGATGCAGGATCGCC 1092
Query 1105 ACTTGCAACACTTGGGAACCTGTCTGGTACGTTCTCCGTGTAAACTACAAGGGAGACATA 1164
|||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||
Sbjct 1093 ACTTGCAACACTTGGGAATCTGTCCGGTACGTTCTCGGTTTAAACTACAAGGGATACATA 1152
Query 1165 ATATCACCATCTGGTTCCTGTTATCATCT----GAAGATTTCTTGTTTT-ACCTTCCAGT 1219
|||||||||| || |||||||||||||| | |||||||||||||| || ||||||
Sbjct 1153 GTATCACCATCGGGCTCCTGTTATCATCTATCTGCAGATTTCTTGTTTTTAC-TTCCAGA 1211
Query 1220 GATAAAATGATCTTT-ATAATACATATAGATATATTAAATTGCTGTATTTTAAGATTATA 1278
|| |||||||||||| || | | ||||||||||||| | || ||||||| |||||||||
Sbjct 1212 GAAAAAATGATCTTTGATTACATATATAGATATATTTATTTACTGTATTG-AAGATTATA 1270
Query 1279 GATATATAAGGTACATGAGAGTGTTTATTTaaaaaaaTT-CACTTGGAATTCATGTTTTG 1337
|||||||||| ||||| ||||||||||| | | | || ||||||||| |||| |||||
Sbjct 1271 GATATATAAGCAACATGTGAGTGTTTATTGAGAGATTTTTCACTTGGAACTCATATTTTG 1330
Query 1338 TGATACGTTAGATTGGAATCCATTTGGGAAAA-GAAGAATCA--TCTGTTCTTATGTCTC 1394
|||||| ||||||||||||||||||||||||| | ||||||| |||||||| |||||||
Sbjct 1331 TGATACTTTAGATTGGAATCCATTTGGGAAAAAGGAGAATCAGCTCTGTTCTAATGTCTC 1390
Query 1395 AAAT 1398
||||
Sbjct 1391 AAAT 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5