BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29820.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491776 jgi|Araly1|491776|fgenesh2_kg.7__1209__AT4G29820.1 1585 0.0
> Ahg491776 jgi|Araly1|491776|fgenesh2_kg.7__1209__AT4G29820.1
Length=1065
Score = 1585 bits (858), Expect = 0.0
Identities = 989/1050 (94%), Gaps = 17/1050 (2%)
Strand=Plus/Plus
Query 1 GCGGAGAAGTACTCTCTGGAGCCGCCACGTCTCAGTGATCCGACTACGACACctttcttc 60
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGGAGAAGGACTCTCTGAAGCCGCCACGTCTCAGTGATCCGACTACGACACCTTTCTTC 60
Query 61 actcttcttcttgcgtcttctctgc-tctcgtggtctctctGTTATTTAATTTTAATCGA 119
||||||||||||||||||||||||| | | | |||||||||||||||||||||||||| |
Sbjct 61 ACTCTTCTTCTTGCGTCTTCTCTGCTTTTAG-GGTCTCTCTGTTATTTAATTTTAATCCA 119
Query 120 TTGAGATCGCTTTTAGCTCTC-GTCTTTGAATTTTACGGG--CAGAAAATGGGTGAAGAA 176
| ||||||||||||||||||| |||||||||||| |||| | |||||||| ||||||
Sbjct 120 TCGAGATCGCTTTTAGCTCTCTATCTTTGAATTTTCCGGGAAAAAAAAATGGGAGAAGAA 179
Query 177 GCTCGAGCGTTAGATATGGAGGAGATCAGTG-ACA-A-CACGACGAGACGAAACGATGTC 233
|||||||| |||||||||||||||| ||||| | | | |||||||||| ||||| |||||
Sbjct 180 GCTCGAGCTTTAGATATGGAGGAGACCAGTGAAGAGAGCACGACGAGAAGAAACCATGTC 239
Query 234 GTTCATGACTTGATGGTTGATTTATACCCGCTTAGCAGCTACTACTTCGGTTCAAAAGAA 293
||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 240 GTTCATGACTTTATGGTTGATTTATACCCGCTTAGCAGCTACTACTTCAGTTCAAGAGAC 299
Query 294 GCTCTTCGCGTCAAGGACGAGATTATCTCTGATCGAGTCATCAGATTGAAATCCAATTAT 353
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 300 GCTCTTCGCGTCAAGGACGAGATTATCTCTGATCGGGTCGTCAGATTGAAATCCAATTAT 359
Query 354 GCTGCTCATGGATTGAGAACTTGCGTTGAAGCTGTTCTTCTGGTTGAGTTGTTCAAGCAT 413
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 GCTGCTCATGGATTGAGAACTTGCGTTGAAGCTGTTCTTCTGGTTGAGTTATTCAAGCAT 419
Query 414 CCTCATGTTTTGCTTCTTCAATATAGAAACTCCATTTTCAAGCTTCCTGGTGGTCGTTTG 473
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CCTCATGTTTTGCTTCTTCAATATAGAAACTCTATTTTCAAGCTTCCTGGTGGTCGTTTA 479
Query 474 AGACCTGGAGAATCAGATATTGAAGGTCTAAAACGGAAACTAGCATCAAAGCTATCGGTT 533
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 480 AGACCTGGAGAATCAGATATTGAAGGTGTACAACGGAAACTAGCATCAAAGCTATCGGTT 539
Query 534 AACGAAAATGTGGGTGTTTCGGG-TTATGAGGTAGGAGAATGTATTGGGATGTGGTGGAG 592
||||||||||| | |||| |||| ||| |||||||| |||||||||||||||||||||||
Sbjct 540 AACGAAAATGTCGTTGTTCCGGGTTTA-GAGGTAGGGGAATGTATTGGGATGTGGTGGAG 598
Query 593 ACCCAACTTTGAGACATTGATGTATCCTTTCTTGCCACCTAATATTAAACACCCAAAGGA 652
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 599 ACCCAACTTTGAGACATTGATGTATCCTTTCTTGCCACCTAATGTAAAACACCCAAAGGA 658
Query 653 ATGCACAAAGCTTTTTCTTGTGAGATTACCGGTACATCAACAGTTTGTTGTGCCTAAGAA 712
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 659 ATGCACAAAGCTTTTTCTTGTGAGATTACCGGTACATCAACAGTTTGTCGTACCTAAGAA 718
Query 713 CTTCAAACTCCTCGCTGTTCCATTGTGTCAACTCCATGAAAATGAAAAGACTTATGGGCC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTTCAAACTCCTCGCTGTTCCATTGTGTCAACTCCATGAAAATGAAAAGACTTATGGGCC 778
Query 773 GATCATGTCGCAAATTCCTAAGCTTCTTTCGAAATTCTCCTTCAACATGATGGAGATATG 832
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 GATCATATCGCAAATTCCCAAGCTTCTTTCAAAATTCTCCTTCAACATGATGGAGATATG 838
Query 833 AACGAACCTCATGATCATTGCCTCTAGTAGCTCTTGCCCCCCGCAATTTGTGATAGGATT 892
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 AACGAACCTCATAATCATTGCCTCTAGTAGCTCTTGCCC---GCAATTTGTGATAGGATT 895
Query 893 ATGT-TT-GGGGAAATCGTTTGTGGAGCCTCTCTGAGTCTGTGACTATATAA-TGTATAT 949
|| | || |||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 896 ATATGTTCGGGGAAATCGTTTGTGGAGCCTCTGTGAGTCTGTGACTATGTAAATGTATAT 955
Query 950 AGGGCTTATAATATATAGACAATGTTGAAGAATAGCATGTTCTTGTTGGTTATAGAGACT 1009
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGGCTTACAATATATAGACAATGTTGAAGAATAGCATGTTCTTGTTGGTTATAGAGACT 1015
Query 1010 AGACATGAAGTAT-ACTGATAGATAGATTA 1038
||||||||||||| | ||||||||||||||
Sbjct 1016 AGACATGAAGTATGATTGATAGATAGATTA 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5