BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29830.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945018 jgi|Araly1|945018|scaffold_701247.1 1628 0.0
Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1 89.8 4e-17
> Ahg945018 jgi|Araly1|945018|scaffold_701247.1
Length=1008
Score = 1628 bits (881), Expect = 0.0
Identities = 959/998 (96%), Gaps = 0/998 (0%)
Strand=Plus/Plus
Query 51 AAAAACCTAAAAAGAGAATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCTCACGAAG 110
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAAACCTAAAAAGAGGATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCTCACGAAG 63
Query 111 ATTCCGTTTGGGCAGCGACGTGGGTTCCGGCGACGGAAGATCGACCGGCGTTGCTTCTGA 170
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 64 ATTCCGTTTGGGCGGCGACGTGGGTTCCAGCGACGGAAGATCGACCGGCGTTGCTTCTGA 123
Query 171 CTGGATCTCTTGACGAGACGGTGAAGTTATGGCGACCGGACGAGCTGGATCTTGTGCGGA 230
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTGGATCTCTAGACGAGACGGTGAAGTTATGGCGACCGGACGAGCTGGATCTTGTGCGGA 183
Query 231 CTAATACTGGACACTCTTTGGGAGTAGCAGCTTTGGCTGCGCATCCTTCTGGGATTATTG 290
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 184 CTAATACTGGACACTCATTGGGAGTAGCAGCTTTGGCGGCGCATCCTTCTGGGATCATTG 243
Query 291 CAGCATCTTCTTCGATTGATAGCTTTGTCCGTGTGTTTGATGTTGATACTAATGCTACGA 350
|||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 244 CAGCTTCTTCTTCGCTTGATAGCTTCGTCCGTGTGTTTGATGTTGATACTAATGCTACAA 303
Query 351 TTGCTGTTTTGGAAGCTCCTCCTTCTGAGGTTTGGGGAATGCAATTTGAACCTAAGGGTA 410
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 304 TTGCTGTTTTGGAAGCTCCTCCTTCTGAGGTTTGGGGAATGCAGTTTGAGCCTAAGGGTA 363
Query 411 CGATCCTTGCTGTTGCAGGTGGAAGTAGTGCCTCAGTCAAGCTTTGGGACACTGCAAGCT 470
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 364 CAATCCTTGCTGTTGCAGGTGGAAGTAGTGCCTCAGTCAAGCTTTGGGACACTTCAAGCT 423
Query 471 GGAGATTAATCTCAACTCTATCAATCCCACGCCCAGATGCACCAAAACCTTCCGATAAAA 530
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 424 GGAGATTAATCTCAACTCTATCAATCCCACGCCCAGAAGCACCAAAACCTTCTGAGAAAA 483
Query 531 CCAGCAGCAAGAAATTCGTTCTCTCGGTGGCTTGGTCTCCTAATGGGAAACGACTTGCTT 590
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 484 CCAGCAGCAAGAAATTCGTTCTCTCAGTGGCTTGGTCTCCTAATGGGAAACGGCTTGCTT 543
Query 591 GTGGTTCAATGGATGGTACGATCTGTGTTTTTGATGTTGACCGCTCAAAGCTACTTCACC 650
|||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 544 GTGGTTCAATGGATGGCACGATCTGTGTCTTTGATGTTGACCGTTCAAAGCTTCTTCATC 603
Query 651 AGCTAGAAGGTCACAATATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGACCCGAGAG 710
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 604 AGCTAGAAGGTCACAACATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGATCCGAGAA 663
Query 711 TCCTCTTCTCTGGATCAGATGATGGGCATGTGAACATGCACGATGCAGAAGGGAAAACGC 770
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 664 TCCTCTTCTCCGGATCAGATGATGGGCATGTGAACATGCACGATGCAGAAGGGAAAACAC 723
Query 771 TGTTGGGGTCCATGTCAGGGCACACGAGTTGGGTGCTGAGCGTTGATGCTAGCCCAGACG 830
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 724 TGTTGGGGTCCATGTCGGGGCACACGAGCTGGGTGCTTAGCGTTGATGCTAGCCCAGACG 783
Query 831 GTGGAGCCATAGCAACCGGCTCAAGCGATAGAACTGTGAGGCTATGGGATCTTAAAATGA 890
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GTGGAGCCATAGCAACTGGCTCAAGCGATAGAACTGTGAGGCTATGGGATCTTAAAATGA 843
Query 891 GAGCTGCGATTCAGACAATGAGCAACCACAATGACCAGGTTTGGTCTGTGGCCTTTAGAC 950
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 844 GAGCTGCGATTCAGACAATGAGCAACCACAATGACCAGGTTTGGTCTGTGGCGTTTAGAC 903
Query 951 CACCAGGTGGAACCGGTGTCCGGGCTGGTCGACTTGCTAGTGTCTCTGATGACAAGAGTG 1010
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CACCAGGTGGAACTGGTGTCCGGGCTGGTCGACTTGCTAGTGTCTCTGATGACAAGAGTG 963
Query 1011 TATCGCTCTATGATTACTCATGAACAATTCGGtttttt 1048
|||||||||| |||||||||||||||||| | ||||||
Sbjct 964 TATCGCTCTACGATTACTCATGAACAATTTGTTTTTTT 1001
> Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1
Length=1798
Score = 89.8 bits (48), Expect = 4e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 1092 ACAATATAATCTGCAACAGGTTGATTTTGACCGGAGTCTTTAGATTTATCGCTTACA 1148
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1798 ACAATGTAATCTGCAACAGGTTGATTTTGACCGGAAACTTTAGATTTATCGCTTACA 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5