BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29840.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1 2647 0.0
Ahg316241 jgi|Araly1|316241|fgenesh1_pm.C_scaffold_2001274 841 0.0
> Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1
Length=1798
Score = 2647 bits (1433), Expect = 0.0
Identities = 1632/1726 (95%), Gaps = 21/1726 (1%)
Strand=Plus/Plus
Query 17 TCTCAC-TTCTCATTCTCTAGAAAAAATGGCTTCGTCTTGTCTCTTCAATGCCTCTGTAT 75
|||| | ||| || ||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 33 TCTCTCTTTC-CAATCTCT--AAAAAATGGCTTCCTCTTGTCTCTTCAACGCCTCTGTAT 89
Query 76 CGTCCTTAAACCCTAAACAAGACCCCATCCGCCGCCACCGGTCAACCTCTCTCCTCCGCC 135
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 90 CTTCCTTAAACCCTAAACAAGACCCCATCCGCCGCCACCGCTCAGCCTCTCTCCTCCGCC 149
Query 136 ACCGCCCCGTCGTCATCTCCTGTACCGCCGATGGCAACAACATCAAAGCCCCGATCGAGA 195
|||| ||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 150 ACCGTCCCGTCGTCGTCTCCTGTACCGCCGATGGAAACAACAACAAAGCTCCGATCGAGA 209
Query 196 CAGCGGTCAAGCCTCCTCACCGTACCGAGGATAACATTCGAGATGAGGCTCGTCGTAATC 255
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 210 CAGCTGTCAAGCCTCCTCACCGTACCGAGGATAACATTCGAGATGAGGCTCGTCGCAACC 269
Query 256 GTTCCAACGCCGTGAATCCATTTTCAGCTAAATACGTTCCGTTTAATGCAGCTCCTGGAT 315
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 270 GTTCCACCGGCGTGAACCCATTTTCAGCTAAATACGTTCCGTTCAATGCAGCTCCTGGAT 329
Query 316 CCACGGAGTCTTACTCTCTCGACGAGATCGTGTACCGTAGCCGCTCCGGTGGTTTGCTTG 375
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CCACTGAGTCTTACTCTCTCGACGAGATCGTGTACCGTAGCCGCTCCGGTGGTTTGCTTG 389
Query 376 ATGTCGAACACGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTATTGGCGTGATCTCT 435
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 390 ATGTTGAGCACGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTATTGGCGAGATCTCT 449
Query 436 TCGATTCGCGTGTTGGTAAAAGCACATGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TCGATTCGCGTGTTGGTAAAAGCACATGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAG 509
Query 496 AGTGGGTTCTTCCTGAGATCGATGACGACGACATCGTTTCAGCTTTTGAAGGAAACTCGA 555
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 510 AGTGGGTTCTTCCTGAGATCGATGACGACGACATCGTTTCGGCTTTTGAAGGAAACTCGA 569
Query 556 ATCTGTTCTGGGCAGAGAGATTTGGTAAGCAGTTTCTAGGTATGAATGATCTGTGGGTGA 615
|| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 570 ATTTGTTCTGGGCTGAGAGATTTGGTAAACAGTTTCTAGGAATGAATGATCTGTGGGTGA 629
Query 616 AACACTGTGGGATTAGTCATACAGGAAGTTTCAAGGATCTTGGAATGACTGTTTTGGTTA 675
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 630 AACACTGTGGGATTAGTCATACTGGAAGTTTCAAGGATCTTGGAATGACTGTTTTGGTTA 689
Query 676 GTCAAGTTAATCGTCTGAGAAAGATGAAACGACCTGTGGTTGGTGTCGGATGTGCTTCCA 735
||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 690 GTCAAGTCAATCGTCTGAGAAAAATGAAACGACCTGTTGTTGGTGTTGGATGTGCTTCCA 749
Query 736 CCGGAGATACTTCTGCTGCTCTATCTGCTTACTGCGCCTCCGCTGGAATCCCATCGATTG 795
|||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 750 CCGGAGATACTTCTGCGGCTCTATCCGCTTATTGTGCCTCTGCTGGAATCCCATCGATTG 809
Query 796 TGTTTTTACCGGCGAACAAGATCTCTATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTG 855
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 810 TGTTCTTACCGGCGAATAAGATCTCAATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTG 869
Query 856 CGTTTGTTTTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGAGATAA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CGTTTGTTTTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGAGATAA 929
Query 916 CTGCGGAATTGCCGATTTATTTGGCGAATTCGTTGAATAGTTTGAGGTTAGAAGGGCAGA 975
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 930 CAGCGGAATTGCCGATTTATTTGGCTAATTCGTTGAATAGTTTGAGGTTAGAAGGGCAGA 989
Query 976 AAACTGCAGCTATTGAGATTTTGCAGCAGTTTGATTGGCAAGTTCCTGATTGGGTGATTG 1035
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 990 AAACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAAGTTCCGGATTGGGTGATTG 1049
Query 1036 TTCCTGGAGGTAACCTAGGAAACATCTATGCCTTTTACAAAGGGTTTAAGATGTGTCAAG 1095
|||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1050 TTCCTGGAGGCAATCTAGGAAACATCTATGCTTTTTACAAAGGATTCAAGATGTGTCAAG 1109
Query 1096 AACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTAATC 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 AACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTAATC 1169
Query 1156 CTCTTTACTTGCACTACAAGTCTGGTTGGAAGGACTTCAAGCCCATGACTGCAAGTACCA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1170 CTCTTTACTTGCACTACAAGTCTGGTTGGAAGGACTTCAAGCCCATGACTGCAAGCACCA 1229
Query 1216 CTTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGTGTACGCTC 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CTTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGTGTACGCTC 1289
Query 1276 TCAAGAAGTGCAATGGTATTGTAGAAGAAGCCACAGAGGAGGAGCTGATGGATGCGATGG 1335
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1290 TCAAGAAGTGCAACGGTATTGTAGAAGAAGCCACTGAGGAGGAGCTGATGGATGCAATGG 1349
Query 1336 CTCAAGCGGATTCGACAGGAATGTTTATCTGTCCTCATACAGGTGTTGCTCTAACTGCTC 1395
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1350 CTCAAGCAGATTCGACGGGAATGTTTATCTGTCCACATACAGGTGTAGCTCTAACTGCTC 1409
Query 1396 TGTTCAAGCTGAGGAATCAAGGAGTGATTGCACCGACTGATCGAACTGTGGTAGTGAGTA 1455
|||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1410 TGTTCAAGCTGAGGAACCAAGGAGTGATTGCTCCGACTGATCGAACCGTGGTTGTGAGTA 1469
Query 1456 CTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATAGATTATCACTCCAATGCCATCCCTG 1515
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1470 CTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATCGATTACCACTCCAATGCCATCCCTG 1529
Query 1516 ACATGGCTTGCAGATTCTCCAATCCTCCTGTTGATGTGAAAGCAGATTTCGGAGCTGTCA 1575
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1530 ACATGGCCTGCAGATTCTCCAATCCTCCTGTTGATGTAAAAGCAGATTTCGGAGCTGTCA 1589
Query 1576 TGGATGTTCTCAAGAGTTACTTAGGAAGTAATACACTTACGTCATAAGAGACAAGACCAT 1635
|||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1590 TGGATGTTCTCAAGAGCTACTTAGGAAGTAATACACTTACGTCATAAGAAACA-GAGCAT 1648
Query 1636 AATCTTTAGCTGTTTTGT-TTTTT--GAAAACTTTTAGACGTTTGTTTGCGTTACTCTTC 1692
|| ||||||||||||||| ||||| ||||||| |||| ||||||||||| | |
Sbjct 1649 AAGCTTTAGCTGTTTTGTCTTTTTTTGAAAACTGTTAGCCGTTTGTTTGC-T--C----- 1700
Query 1693 AACTCATCTCTCTGTGATCTTTATCTGTTTCTCAGTTTTCCAATAA 1738
| || | | ||||||||||||||||||||||||||||||||||||
Sbjct 1701 A--TC-T-T-TCTGTGATCTTTATCTGTTTCTCAGTTTTCCAATAA 1741
Score = 89.8 bits (48), Expect = 7e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1784 TGTAAGCGATAAATCTAAAGACTCCGGTCAAAATCAACCTGTTGCAGATTATATTGT 1840
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1742 TGTAAGCGATAAATCTAAAGTTTCCGGTCAAAATCAACCTGTTGCAGATTACATTGT 1798
> Ahg316241 jgi|Araly1|316241|fgenesh1_pm.C_scaffold_2001274
Length=1560
Score = 841 bits (455), Expect = 0.0
Identities = 1025/1296 (79%), Gaps = 56/1296 (4%)
Strand=Plus/Plus
Query 327 TACTCTCTCGACGAGATCGTGTACCGTAGC-CGCTCCGGTGGTTTGCTTGATGTCGAACA 385
||||| ||||||||||| || |||||| | | ||||||||| | || |||||| ||||
Sbjct 268 TACTCCCTCGACGAGATTGTCTACCGT-TCACAATCCGGTGGTCTCCTCGATGTCCAACA 326
Query 386 CGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTAT-TGGCGTGATCTCTTCGATTCGC 444
|||| | | || ||||| || | ||| || | | | |||||| | ||||||||||| |
Sbjct 327 CGATTTCGCCGCCTTGAAACGCTACGACGGAGAAT-TCTGGCGTAACCTCTTCGATTCTC 385
Query 445 GTGTTGGTAAAAGCACA-TGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAGAGTGGGTT 503
| || ||||||| || | ||||| || ||||| || ||||||||||||||||||||||||
Sbjct 386 GCGTCGGTAAAACCA-ATTGGCCGTACGGATCAGGCGTTTGGTCGAAGAAAGAGTGGGTT 444
Query 504 CTTCCTGAGATCGATGACGACGACATCGTTTCAGCTTTTGAAGGAAACTCGAATCTGTTC 563
|||||||||||| | || |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 445 CTTCCTGAGATCAACGATGACGACATCGTTTCTGCTTTTGAAGGAAACTCGAATTTGTTC 504
Query 564 TGGGCAGAGAGATTTGGTAAGCAGTTTCTAGGTA-TGAATGATCTGTGGGTGAAACACTG 622
||||| |||||||||||||| |||| ||| | | |||| ||||| ||||||||||| ||
Sbjct 505 TGGGCTGAGAGATTTGGTAACCAGTATCT-GCAAATGAACGATCTTTGGGTGAAACATTG 563
Query 623 TGGGATTAGTCATACAGGAA-GTTTCAAGGATCTTGGAATGACTGTT-TTGGTTAGTCAA 680
||| ||||| || || || |||| ||| |||| || ||||||||| ||| || |||
Sbjct 564 TGGAATTAGCCACACTGGTTCGTTTAAAG-ATCTGGGCATGACTGTTCTTGTTTC-TCAG 621
Query 681 GTTAATCGTCTGAG-AAAGATGAAACGA-CCTGTGGTTGGTGTCGGATGTGCTTCCACCG 738
|| |||||||| | ||| ||||| | | || || | || || ||||| ||||| || |
Sbjct 622 GTGAATCGTCTCCGGAAA-ATGAA-CAAACCAGTCATCGGAGTTGGATGCGCTTCTACTG 679
Query 739 GAGATACTTCTGCTGCTCTATCTGCTTACTGCGCCTCCGCTGGAATCCCATCGATTGTGT 798
||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| || |
Sbjct 680 GAGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGCTGGAATCCCGTCGATCGT-T 738
Query 799 TT-TTACCGGCGAACAAGATCTCTATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTGCG 857
|| ||||||||| | || ||||| ||||||||||| || ||||| || |||||||| ||
Sbjct 739 TTCTTACCGGCGGATAAAATCTCCATGGCTCAGCTTGTGCAGCCAATTGCTAATGGGGCT 798
Query 858 TTTGTT-TTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGA-GATAA 915
||||| || |||||||| |||||||| || || |||||| | |||| ||||| | |||
Sbjct 799 TTTGTGCTT-AGTATTGATACTGATTTCGACGGATGTATGCATTTGATCAGAGAAG-TAA 856
Query 916 CTGCGGAA-TTGCCGATTTATTTGGCGAATTCGT-TGAATAGTTTGAGGT-TAGAAGGGC 972
| ||||| || |||||||| || ||||| || | | || || | | | | ||||| |
Sbjct 857 CGGCGGAGCTT-CCGATTTACTTAGCGAACTC-TCTCAACAGCCTCCG-TCTCGAAGGAC 913
Query 973 AGAAA-ACTGCAGCTATTGAGATTTTGCAGCAGTTTGATTGGCAAGTTCCTGATTGGGTG 1031
| ||| || || || ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 914 A-AAAGACGGCGGCGGTTGAGATATTGCAGCAGTTTAATTGGCAAGTTCCTGATTGGGTC 972
Query 1032 ATTGTTCCTGGAGGTAACCTAGGAAACATCTATGCCTTTTACAAAGGGTTTAAGATGTGT 1091
|||||||||||||| || || || ||||||||||| ||||||||||||||| | ||||||
Sbjct 973 ATTGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAGGGTTTCATATGTGT 1032
Query 1092 CAAGAACTGGGACTTGTCGATAGGATCCCGAGGA-TGGTCTGTGCACAAGCAGCTAATGC 1150
|||| | || ||||| ||||| ||||| || | | || ||||| ||||| ||||| ||
Sbjct 1033 AAAGAGTTAGGTCTTGTTGATAGAATCCCTAG-ACTTGTGTGTGCTCAAGCTGCTAACGC 1091
Query 1151 TAATCCTCTTTACTTGCACTACAAGTCTGG-TTGGAAG--GACTTCAAGCCCAT-GACTG 1206
|||||| ||||||||||||||||| ||||| || ||| || ||||| || || || |
Sbjct 1092 TAATCCACTTTACTTGCACTACAAATCTGGGTTTAAAGAAGATTTCAATCC-ATTGAAAG 1150
Query 1207 CAAGTACCAC-TTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCT 1265
||| || || ||| || ||||||||||||||||| |||||||| || || |||||||||
Sbjct 1151 CAAACACTACATTT-GCTTCTGCGATTCAGATCGGCGACCCTGTTTCGATTGATAGAGCT 1209
Query 1266 GTGTACGC-TCTCAAGAAGTGC-AATGGTATTGTAGAAGAAGCCACAGAGGAGGAGCTGA 1323
||||| || | | ||||| | | ||||| ||||| || ||||| || || || ||| |||
Sbjct 1210 GTGTATGCGT-TGAAGAAAT-CTAATGGCATTGTTGAGGAAGCTACTGAAGAAGAGTTGA 1267
Query 1324 TGGATGCGATGGCTCAAGCGGATTCGACAGGAATGTTTATCTGTCCTCATACAGGTGTTG 1383
||||||| | |||| || ||||| || || |||||||| ||||| |||||||||||||
Sbjct 1268 TGGATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATACAGGTGTTG 1327
Query 1384 C-TCTAACTGC-TCTGTTCAAGCTGAGGAA-TCAAGGAGTGATTGCACCGACTGATCGAA 1440
| | | || || | || | ||||||||||| || ||||| || | | ||| |||||| |
Sbjct 1328 CAT-TGACGGCGT-TGATAAAGCTGAGGAAGTCT-GGAGTTATCGAAGCGAATGATCGGA 1384
Query 1441 CTGTGGTAGTGAGTACTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATAGATTATCACT 1500
||||||| |||||||| |||||||| ||||||||||| ||| |||||| |||||||| |
Sbjct 1385 CTGTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACGCAGAGTAAGATTGATTATCATT 1444
Query 1501 CCAATGCC-ATCCCTGACATGGCTTGCAGATTCTCCAATCCTCCTGTTGATG-TGAAAGC 1558
| || | || || |||||||| ||||| | ||||| || || || | | || ||
Sbjct 1445 CTAA-GAATATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCGGT-GAAGGTTAAGGC 1502
Query 1559 AGA-TTTCGGAGCTGTCATGGATGTTCTCAAG-AGT 1592
| | ||| || | || ||||||||||||||| |||
Sbjct 1503 AAAGTTT-GGTTCAGTTATGGATGTTCTCAAGGAGT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5