BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29860.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491772 jgi|Araly1|491772|fgenesh2_kg.7__1205__AT4G29860.1 2065 0.0
Ahg480536 jgi|Araly1|480536|fgenesh2_kg.3__3237__AT2G19350.1 403 2e-111
> Ahg491772 jgi|Araly1|491772|fgenesh2_kg.7__1205__AT4G29860.1
Length=1907
Score = 2065 bits (1118), Expect = 0.0
Identities = 1243/1304 (95%), Gaps = 6/1304 (0%)
Strand=Plus/Plus
Query 42 CTTGGTTTCTCTATTACAAGAG-TTTGGTTTTGTGTAGTAGTTGAATCAGAGATGAGTAA 100
|||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||
Sbjct 1 CTTGGTTTCTCTATTACAAGAGTTTTGGTTTTGTGTAGAAGCTAAATCAGAGATGAGTAA 60
Query 101 GAGACCTCCGCCTGATCCAGTGGCTGTGCTTAGAGGGCACCGTCACTCTGTTATGGATGT 160
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||
Sbjct 61 GAGACCTCCGCCTGATCCGGTTGCTGTGCTTAGAGGACACCGTCACTCTGTTATGGACGT 120
Query 161 TTCCTTCCATCCATCAAAATCTCTGCTTTTCACTGGTTCAGCTGATGGAGAGTTGAGGAT 220
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGTTTCATCCATCAAAATCTCTGCTTTTCACTGGTTCAGCTGATGGAGAGTTGAGGAT 180
Query 221 TTGGGATACTATTCAGCACCGTGCAGTTTCTTCTGCTTGGGCTCATAGTAGAGCAAATGG 280
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGGATACAATTCAGCATCGTGCAGTTTCTTCTGCTTGGGCTCATAGTAGAGCAAATGG 240
Query 281 GGTTTTAGCTGTAGCAGCTAGTCCCTGGTTAGGAGAGGACAAGATTATCAGCCAGGGAAG 340
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 241 GGTTTTAGCTGTAGCAGCTAGTCCATGGTTAGGAGAGAACAAGATTATCAGCCAGGGAAG 300
Query 341 AGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGAGACCCATTACT 400
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGAGATCCATTACT 360
Query 401 AATACTTGAGACATGCGCCTATCATTTTTGCAAGTTCTCTCTTGTTAAGAAGCCTAAGAA 460
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 AATACTTGAGACAAGCGCCTATCATTTTTGCAAGTTCTCTCTGGTTAAGAAGCCTAAGAC 420
Query 461 TTCTCTGCAAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACAC 520
||||||||||||||||| |||||||| || | ||||||||||||||||| |||||||||
Sbjct 421 TTCTCTGCAAGAAGCTGTAAGTCACTTACAGAATTGTGATGAGCAGGATGATGGAGACAC 480
Query 521 ATGTAATGTTCAAATTGCTGATGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCA 580
||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 481 GCGTAGTGTTCAACTTGGAGATGATAGTGAACGATCCGTGGAGGATTCTGGTTTGCTTCA 540
Query 581 GGATAAAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGA 640
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCATGGAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGA 600
Query 641 GGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAGCTTCCTCAAAGTAGCCC 700
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 GGTAGAGATATGGGATATCAATACCGGAGACAAGATCATACAGCTTCCTCAAAGTAGCCC 660
Query 701 TGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGAATGTGTATGGCTGTTCAATTGTT 760
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 TGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGTATGTGTATGGCTGTTCAATTGTT 720
Query 761 TTGCCCTCCTGAATCACAGGGTTTCTTACATGTCTTAGCTGGTTATGAGGATGGTTCAAT 820
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 TTGCCCTCCTGAATCACAGGGTTTCTTACATGTCCTAGCTGGTTATGAGGATGGTTCAAT 780
Query 821 ACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCATTCAGA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCATTCAGA 840
Query 881 GCCAGTTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGA 940
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 GCCAGTTTTAAGTCTAAGTGTTGCATCATCATGTGATGGAGGTATCTCAGGAGGGGCAGA 900
Query 941 TGACAAAATTGTGATGTATAATCTCAACCATTCAACTGGTTCTTGTACAATAAGGAAAGA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 TGACAAAATTGTGATGTATAATCTCAACCATTCAACTGGTTCTTGTACAATGAGGAAAGA 960
Query 1001 GATTACTTTGGAAAGGCCCGGTGTATCGGGCACCTCAATTCGAGTCGATGGGAAAATTGC 1060
|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 961 GATTACTTTGGAAAGGCCCGGTGTATCGGGGACCTCAATTCGACCCGATGGCAAAATTGC 1020
Query 1061 AGCCACGGCTGGTTGGGACCACAGAATACGAGTCTATAATTACCGCAAAGGAAATGCTCT 1120
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1021 AGCAACGGCTGGTTGGGACCACAGAATAAGGGTCTATAATTACCGCAAAGGAAATGCTCT 1080
Query 1121 AGCAATACTAAAGTACCACCGAGCAACGTGCAACGCTGTGTCCTACTCTCCAGACTGTGA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGCAATACTAAAGTACCACCGAGCAACGTGCAACGCTGTGTCCTACTCTCCAGACTGTGA 1140
Query 1181 GCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTATATCCTCCCCA 1240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 GCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTCTATCCTCCCCA 1200
Query 1241 TAAATCTCTCTGATCTT-TAT--GGTTCGGTTTTGGTTTGATTTCTTGACCTGAATCTCT 1297
|||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1201 TAAATCTCAATGATCTTCTATATGGTTCGGTTTTGGTTTGATTTCTTGACCTGAATCCCT 1260
Query 1298 TGAATTGGTAAATATACATGATGTCATCATCaaaaaaaCAAATG 1341
|||||| ||||||| ||| ||||||||||||||| ||||||||
Sbjct 1261 TGAATTTGTAAATA--CATTATGTCATCATCAAAAGAACAAATG 1302
Score = 828 bits (448), Expect = 0.0
Identities = 526/561 (94%), Gaps = 16/561 (3%)
Strand=Plus/Plus
Query 1392 TTGATTTGTTCAAACTCGCACGTTCTGCCGTTTTCGGAGAAAAGAATAATCAAACGACGC 1451
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1313 TTGATTTGTTCAAACTCGCACGTTCTGCCGTTTTCCTAGAAAAGAAAAATCAAACGACGC 1372
Query 1452 GTAGTTTGAATCATAGTACGTTGAGTAGATTTCACGACCAAAAGAAATTGCATTTGCACC 1511
|||||||| |||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 1373 GTAGTTTGCATCACCGTACGTTGAGTAGATTTCACGACCAAAAG-AA----A-TTGCACC 1426
Query 1512 AAACTAATCCGTCACCGTCGTAGGAGACTCAT-AACATCTGAAGACCTAAAATTCAAAC- 1569
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1427 AAACTAATCCGTCACCGTCGCAGGAGACTCATAAACATCTGAAGACCTAAAA-TCAAACA 1485
Query 1570 A-CTGTGTAAAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGA 1628
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 AGCTGTGT-AAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGA 1544
Query 1629 TTGAGACTTCATACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGG 1688
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TTGAGACTTCTTACACAGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGG 1604
Query 1689 CTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGAG 1748
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1605 CTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGCTTCTTCATGGCTTATAATCTAG 1664
Query 1749 TTGGCGGTGATCGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATTC 1808
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1665 TTGGCGGTGATCGAGGCCACGGTATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCAT-C 1723
Query 1809 CC-GGGTTTTACTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCC 1867
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1724 CCTGGGTTTTACTATACACGGATCGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCC 1783
Query 1868 TTCTCAAACATACCGCCCGTTTAGGTGTCCCCTTTTGAATCTCTCCTACTCAAAATGTAT 1927
|||||||||||||||||||||||| || ||||| ||| ||||||||||||| |||||
Sbjct 1784 TTCTCAAACATACCGCCCGTTTAGCC-TCGCCTTTCGAACCTCTCCTACTCAA--TGTAT 1840
Query 1928 AGAGATGTTTTATTACTCTAT 1948
|||||||||||||| ||||||
Sbjct 1841 AGAGATGTTTTATTGCTCTAT 1861
> Ahg480536 jgi|Araly1|480536|fgenesh2_kg.3__3237__AT2G19350.1
Length=630
Score = 403 bits (218), Expect = 2e-111
Identities = 281/312 (90%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 1580 ATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGATTGAGACTTCA 1639
||||| |||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||
Sbjct 100 ATGGCTTACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCG 159
Query 1640 TACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGGCTTTACTCGTG 1699
|||||||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 160 TACACCGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGCTCTACTCGTA 219
Query 1700 TTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGAGTTGGCGGTGAT 1759
||||||||||||||||| || || |||||||||||||| ||||| |||||||| ||||||
Sbjct 220 TTCGGAACCCTAGGAATCGTTTCAGGTTTCTTCATGGCGTATAACCGAGTTGGTGGTGAT 279
Query 1760 CGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATTCCC-GGGTTTTA 1818
||||| ||||||||||||||||| || ||||| ||||||||||| | |||| ||||||||
Sbjct 280 CGAGGTCACGGGATTTTCTTCATTGTACTCGGATGTCTTCTGTTTA-TCCCGGGGTTTTA 338
Query 1819 CTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAACAT 1878
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 339 CTATACACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAATAT 398
Query 1879 ACCGCCCGTTTA 1890
||| |||||||
Sbjct 399 ACCATCCGTTTA 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5