BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29870.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491771 jgi|Araly1|491771|fgenesh2_kg.7__1204__AT4G29870.1 848 0.0
> Ahg491771 jgi|Araly1|491771|fgenesh2_kg.7__1204__AT4G29870.1
Length=652
Score = 848 bits (459), Expect = 0.0
Identities = 608/674 (90%), Gaps = 34/674 (5%)
Strand=Plus/Plus
Query 1 ATCCGACGAAAATGGCTCCGAGATCAGATTCACAAACCCTAGCCACCGGCTCCG--ACGA 58
|||||||||||||||| |||||||| |||||||||||||||||||| ||||||| || |
Sbjct 1 ATCCGACGAAAATGGCACCGAGATCCGATTCACAAACCCTAGCCACTGGCTCCGTCAC-A 59
Query 59 --AAATGAATCCTCAATCGATCCGATCTTCCACATTCTCCGTATCATCCCTTTCTCCTTC 116
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 TCCGATGAATCCTCAATCGATCCGATCTTCCACATTCTCCGTACCATCCCTTTCTCCTTT 119
Query 117 CTCCGACCACCACGTCTTCGTCTCAAGCTCCCTTCCTTCACTCTCCCATCTCCAATGACT 176
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 CTCCGACCACCGCGTCTCCGTCTCAAGCTCCCTTCCTTCACACTCCCATCTCCAATGACT 179
Query 177 GTCTTCTCACTGATTCTCCTCACTTACTTCCTCGTCGTCTCCGGTTTCGTCTACGACGTG 236
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 GTCTTCTCTTTGATTCTCCTCACTTACTTCCTCGTCGTCTCCGGCTTCGTCTACGACGTG 239
Query 237 ATTGTCGAGCCTCCAGGTATCGGATCGACACAGGATCCAATCACCGGGTCAGTAAGACCC 296
||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||
Sbjct 240 ATTGTCGAGCCTCCAGGTATCGGATCGACTCAAGACCCAATCACCGGGTCAGTACGACCC 299
Query 297 GTCGTGTTTATGTCGGGTCGGGTCAATGGTCAATACATCATTGAAGGTCTTTCTTCCGGA 356
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 300 GTAGTGTTCATGTCGGGTCGGGTCAATGGTCAATACATCATAGAAGGTCTTTCTTCGGGA 359
Query 357 TTCATGTTCGTACTCGGTGGGATTGGAATCATAATGTTGGATCTGGCATTGGATAAGAAT 416
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TTCATGTTCGTGCTCGGTGGGATTGGGATCATAATGTTGGATCTGGCATTGGATAAGAAT 419
Query 417 CGAGCTAAGAGTGTTAAAGCATCTTATGCAACAGCTGGAGTCTCCTCCATTGTGATTGCT 476
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 420 CGAGCTAAGAGTGTTAAAGCATCTTATGCTACAGCTGGAATCTCCTCCATTGTGATTGCT 479
Query 477 TATGTTATGAGTATGCTCTTCATTCGCATTAAGATCCCTGGTTATCTCCGTTAGAGGGTT 536
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 480 TATGTTATGAGTATGCTCTTCATTCGTATTAAGATCCCTGGTTATCTCCATTAGAGG-TT 538
Query 537 AGATCACTTTTGGCTTCAATTCTGTAATTGGATCTTTAGTAT-AAGATCGATCATTAGAA 595
| | | | | ||||||||||||||||| | ||||||||||| |||||
Sbjct 539 ---T-A-----G-----A-T---GTAATTGGATCTTTAGTTTTAAGATCGATCACTAGAA 580
Query 596 A-AAA-----TGTGACtttttgttt-tgtttgtttgCTAAAGCTTATGTGTTTCTTGTTT 648
| ||| |||||| |||| ||| ||| ||||| |||| |||||||||||||||||||
Sbjct 581 AGAAAAAAAATGTGACCTTTT-TTTGTGTGTGTTTTCTAA-GCTTATGTGTTTCTTGTTT 638
Query 649 GATAATGAGAATTT 662
||||||||||||||
Sbjct 639 GATAATGAGAATTT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5