BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29880.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg353815 jgi|Araly1|353815|fgenesh1_pg.C_scaffold_7000988 1740 0.0 Ahg343262 jgi|Araly1|343262|fgenesh1_pg.C_scaffold_3003025 848 0.0 > Ahg353815 jgi|Araly1|353815|fgenesh1_pg.C_scaffold_7000988 Length=1110 Score = 1740 bits (942), Expect = 0.0 Identities = 1066/1124 (95%), Gaps = 16/1124 (1%) Strand=Plus/Plus Query 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60 Query 61 ACAATGATGATGATGGACTTGAGTACATCACCACCATCATCA-CCACTTTCACCATCCTT 119 ||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| | Sbjct 61 ACAATGATGATGATGGACTTGAGCACATCACCACCCTCATCACCCA-TTTCACCAT-C-- 116 Query 120 ATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACTAGAGGTTGTGAATTT 179 | ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 117 -T--------TCACCATCATACAATAACAACGAGGAAGATAGACTTGAGGTTGTGAATTT 167 Query 180 GAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAA 239 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GAGTGGCATGGCATTGCAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAA 227 Query 240 GCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCAAGATTACT 299 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 228 GCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCGAGATTACT 287 Query 300 CAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTCTTCCAAACTCCATTGG 359 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 288 CAACTTGATAGCATTAGATATTCACTCTAACCAGATCAAAGCTCTTCCAAACTCCATTGG 347 Query 360 TTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCA 419 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 TTGTCTCTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCA 407 Query 420 AACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 AACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAG 467 Query 480 ATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAAAAGCTCTGTGTCAACTCAAA 539 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 468 ATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAGGAAGCTCTGTGTCAACTCAAA 527 Query 540 CAAGCTCATTAGCCTACCAGCCACCATCACCTGCCTCACTTCCCTGCGTGTCCTCGATGC 599 ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| Sbjct 528 CAAGCTCATTAGCCTACCAACCACCATCACCTACCTCACTTCCCTACGTGTCCTCGATGC 587 Query 600 TCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGAGAACCTCATCAACCTCGAAAT 659 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 588 TCGTCTCAATTGCCTTATGATCCTCCCGGAGGACCTCGAGAACCTCATCAACCTCGAGAT 647 Query 660 CCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 CCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCT 707 Query 720 CCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCTAT 779 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 708 CCTGAACCTCCTCGAGCTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCCAT 767 Query 780 TGGATGCATGAGGCGCCT-ACGAAAACTGAGCGCGGAAGGAAACCCACTCGTCTCCCCAC 838 ||||||||||||||| || | |||| |||||||| || |||||||||||||| ||||||| Sbjct 768 TGGATGCATGAGGCGGCTGAGGAAA-CTGAGCGCAGAGGGAAACCCACTCGTGTCCCCAC 826 Query 839 CCATTGAGGTTGTGGAACAGAGCTTGCATGCGGTGCGAGAGTATCTGAGCCAAAAGATGA 898 |||||||||||||||| ||||||||||| || ||| |||||||||| ||||||||||||| Sbjct 827 CCATTGAGGTTGTGGAGCAGAGCTTGCAGGCAGTGAGAGAGTATCTAAGCCAAAAGATGA 886 Query 899 ATGGTAAACTGGTGAACACCGCAGCAAAGAAGAAGACATGGGGTTTCCGTAAACTAGTCA 958 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| Sbjct 887 ATGGTAAACTGGTGAACAGCGCGGCAAAGAAGAAGACATGGGGTTTCCGTAAACTGGTCA 946 Query 959 AGTACGGGACATTCAATGGCAGATCAAGGGTTTGGACCAGGGAAGAGCGAGAAGGGCTCA 1018 |||| ||||||||||||||||||||||| | ||||||||| |||||| ||||||| |||| Sbjct 947 AGTATGGGACATTCAATGGCAGATCAAGAGCTTGGACCAGAGAAGAGAGAGAAGGTCTCA 1006 Query 1019 TCATGCCTGAGTACCGTCCCATTGATATCCTAACTTCCACCAAGTTTCCTGTGACGTGCT 1078 ||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct 1007 TCATGCCCGAGTACCGTCCCATTGATATCCTAACTTCGACCAAGTTTCCTGTAATGTGCT 1066 Query 1079 CACCTCGACGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA 1122 ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1067 CACCTCGGCGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA 1110 > Ahg343262 jgi|Araly1|343262|fgenesh1_pg.C_scaffold_3003025 Length=1134 Score = 848 bits (459), Expect = 0.0 Identities = 933/1156 (81%), Gaps = 56/1156 (5%) Strand=Plus/Plus Query 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60 |||||||||||||| ||||||| |||||||| || ||||||||| || |||||| Sbjct 1 ATGATATGCGAAGAGGCATATC---ATCAGCAACCGCAAATACAAAAGGAACAAATGATG 57 Query 61 ACAATGATGATGATGGA-C-TTG-AGT-A-CATC-AC-CACCATCATCACCACT-T--TC 110 || |||||||||||||| | | ||| | |||| || | | ||||||| | | || Sbjct 58 ACTATGATGATGATGGATCAACGTAGTAATCATCAACGGA-AAAAATCACCATTATCGTC 116 Query 111 ACCATC--CT---T-ATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACT 164 ||||| || | ||| ||||| |||||||||| |||||| || ||||||||||| || Sbjct 117 GCCATCATCTCCATCATCACCAAAATCACCATCATTCAATAATAATGAGGAAGAGAGGCT 176 Query 165 AGAGGTTGTGAATTTGAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTT 224 ||||||||||||||||||||| |||||||| | |||||||| |||||||| |||||||| Sbjct 177 AGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAATCCTTCACTCAATTT 236 Query 225 GGCAAATATTTGCAAGCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATC-TC 283 || | |||||||||||||||||||||||||||||| || ||| ||||||||||| | Sbjct 237 AGCTCAGATTTGCAAGCTTGATCTCTCCAACAATCATCTCCAGACTATACCAGAATCAT- 295 Query 284 TAACAGCAAGATTACTCAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTC 343 ||||||| ||| ||||||||||||||||||| ||| |||||||||| ||||||||||||| Sbjct 296 TAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAATCAGATCAAAGCTC 355 Query 344 TTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGA-TCCTTAATGTCTCCGGCAACTTT 402 |||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| Sbjct 356 TTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTC-TCAATGTCTCCGGCAACTTT 414 Query 403 CTCGTTTCCCTCCCCCAAA-CTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAA 461 || || ||| ||||| ||| |||| ||| |||||||||| || ||||||||||| || || Sbjct 415 CTTGTATCCTTCCCC-AAATCTATCCAACATTGCAGGTCTCTGGAAGAACTAAATGCAAA 473 Query 462 CTTCAACGAGCTGATTAGATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAA-A 520 ||||||| | || || |||||||||||| ||| || || ||||| |||||||| || | Sbjct 474 CTTCAACAAACTCATCAGATTACCAGACTCCATTGGATTTGAACTCACCAATCT-AAGGA 532 Query 521 AGCTCTGTGTCAACTCAAACAAGCTCATTAGCCTACCAGC-CACCATCAC-CTGCCTCAC 578 |||||| | ||||||| |||||||| ||||| || ||| | | |||| || | |||||| Sbjct 533 AGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCA-CTCTCCATTACTCA-CCTCAC 590 Query 579 TTCCCTGCGTGTCCTCGATGCTCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGA 638 || || ||||||||||| ||||||||||| ||||| ||||| ||||| || || ||||| Sbjct 591 ATCTCTCCGTGTCCTCGACGCTCGTCTCAACTGCCTCATGATTCTCCCAGATGATCTCGA 650 Query 639 GAACCTCATCAACCTCGAAATCCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCT 698 ||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| Sbjct 651 GAATCTCATCAACCTCGAGATTCTCAATGTCAGCCAGAATTTCCAGTATCTTTCCGCTCT 710 Query 699 TCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGAT 758 ||||||||| || || ||| | |||||||| | || || ||| |||||||||||||||| Sbjct 711 TCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTACAACAAGAT 770 Query 759 AACAGTGTTGCCTGAGTCTATTGGATGCATGAGGCGCCTACGAAAACTGAGCGCGGAAGG 818 || || || |||||||| ||||| |||||||| | || | || ||||| | ||||| Sbjct 771 CACTGTATTACCTGAGTCCATTGGCTGCATGAGAAGGTTAAGGAAGCTGAGTGTTGAAGG 830 Query 819 AAACCCACTCGTCTCCCCACCCATTGAGGTTG-TGGAACAGAG-CTTGCATGCGGTGCGA 876 |||||| ||||| ||||| ||||| ||||| | |||| |||| || ||| | |||| || Sbjct 831 AAACCCGCTCGTGTCCCCGCCCATCGAGGT-GATGGAGCAGAATCT-GCAGGTGGTGAGA 888 Query 877 GAGTATCTGAGC-CAAAAGATGAATGGTAAACTGGTGAAC-AC-CGCA-GCAAAGAAGAA 932 |||||||||| | |||||||||||||| | || || | | || ||||| ||||| Sbjct 889 GAGTATCTGA-CACAAAAGATGAATGG-AGGCTCACCAAGGAGTC-CAAGCAAA-AAGAA 944 Query 933 GACATGGGGTTTCCGTAAACTAGTCAAGTACGGGACATTCAATGGCAGATCAAGG-GTTT 991 | | ||||| ||| ||||| | || ||||| ||||| ||||||||| ||||||| | | Sbjct 945 GTCTTGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAGCT- 1003 Query 992 GGACCAGGGAAGAGCGAGAAGGGCTCATCATGCCTGAGTACCGTC-CCATTGATA-TCCT 1049 ||| || || ||| | |||||| | ||||||||||||||||| | |||| || | || | Sbjct 1004 GGAATAGAGAGGAGAGGGAAGGGTTTATCATGCCTGAGTACCG-CGCCATCGACAGTCTT 1062 Query 1050 AACTTCCACCAAG-T-TTCCTGTGAC-GTGCTCACCTCGACGTCTCTTCTCCCCAAGAAC 1106 |||| || || | ||| || || || ||| || || |||||||| || |||||||| Sbjct 1063 G-CTTCG-CCTAGGTATTC-TG-GAATGTTCTCTCCACGCCGTCTCTTTTCTCCAAGAAC 1118 Query 1107 CTATTTCAGCAGATAA 1122 |||||||||||||||| Sbjct 1119 CTATTTCAGCAGATAA 1134 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5