BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29880.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353815 jgi|Araly1|353815|fgenesh1_pg.C_scaffold_7000988 1740 0.0
Ahg343262 jgi|Araly1|343262|fgenesh1_pg.C_scaffold_3003025 848 0.0
> Ahg353815 jgi|Araly1|353815|fgenesh1_pg.C_scaffold_7000988
Length=1110
Score = 1740 bits (942), Expect = 0.0
Identities = 1066/1124 (95%), Gaps = 16/1124 (1%)
Strand=Plus/Plus
Query 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60
Query 61 ACAATGATGATGATGGACTTGAGTACATCACCACCATCATCA-CCACTTTCACCATCCTT 119
||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |
Sbjct 61 ACAATGATGATGATGGACTTGAGCACATCACCACCCTCATCACCCA-TTTCACCAT-C-- 116
Query 120 ATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACTAGAGGTTGTGAATTT 179
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 117 -T--------TCACCATCATACAATAACAACGAGGAAGATAGACTTGAGGTTGTGAATTT 167
Query 180 GAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAA 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAGTGGCATGGCATTGCAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAA 227
Query 240 GCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCAAGATTACT 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 228 GCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCGAGATTACT 287
Query 300 CAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTCTTCCAAACTCCATTGG 359
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 288 CAACTTGATAGCATTAGATATTCACTCTAACCAGATCAAAGCTCTTCCAAACTCCATTGG 347
Query 360 TTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCA 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTGTCTCTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCA 407
Query 420 AACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAG 467
Query 480 ATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAAAAGCTCTGTGTCAACTCAAA 539
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 468 ATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAGGAAGCTCTGTGTCAACTCAAA 527
Query 540 CAAGCTCATTAGCCTACCAGCCACCATCACCTGCCTCACTTCCCTGCGTGTCCTCGATGC 599
||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct 528 CAAGCTCATTAGCCTACCAACCACCATCACCTACCTCACTTCCCTACGTGTCCTCGATGC 587
Query 600 TCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGAGAACCTCATCAACCTCGAAAT 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 588 TCGTCTCAATTGCCTTATGATCCTCCCGGAGGACCTCGAGAACCTCATCAACCTCGAGAT 647
Query 660 CCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCT 707
Query 720 CCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCTAT 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 708 CCTGAACCTCCTCGAGCTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCCAT 767
Query 780 TGGATGCATGAGGCGCCT-ACGAAAACTGAGCGCGGAAGGAAACCCACTCGTCTCCCCAC 838
||||||||||||||| || | |||| |||||||| || |||||||||||||| |||||||
Sbjct 768 TGGATGCATGAGGCGGCTGAGGAAA-CTGAGCGCAGAGGGAAACCCACTCGTGTCCCCAC 826
Query 839 CCATTGAGGTTGTGGAACAGAGCTTGCATGCGGTGCGAGAGTATCTGAGCCAAAAGATGA 898
|||||||||||||||| ||||||||||| || ||| |||||||||| |||||||||||||
Sbjct 827 CCATTGAGGTTGTGGAGCAGAGCTTGCAGGCAGTGAGAGAGTATCTAAGCCAAAAGATGA 886
Query 899 ATGGTAAACTGGTGAACACCGCAGCAAAGAAGAAGACATGGGGTTTCCGTAAACTAGTCA 958
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 887 ATGGTAAACTGGTGAACAGCGCGGCAAAGAAGAAGACATGGGGTTTCCGTAAACTGGTCA 946
Query 959 AGTACGGGACATTCAATGGCAGATCAAGGGTTTGGACCAGGGAAGAGCGAGAAGGGCTCA 1018
|||| ||||||||||||||||||||||| | ||||||||| |||||| ||||||| ||||
Sbjct 947 AGTATGGGACATTCAATGGCAGATCAAGAGCTTGGACCAGAGAAGAGAGAGAAGGTCTCA 1006
Query 1019 TCATGCCTGAGTACCGTCCCATTGATATCCTAACTTCCACCAAGTTTCCTGTGACGTGCT 1078
||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 1007 TCATGCCCGAGTACCGTCCCATTGATATCCTAACTTCGACCAAGTTTCCTGTAATGTGCT 1066
Query 1079 CACCTCGACGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA 1122
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1067 CACCTCGGCGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA 1110
> Ahg343262 jgi|Araly1|343262|fgenesh1_pg.C_scaffold_3003025
Length=1134
Score = 848 bits (459), Expect = 0.0
Identities = 933/1156 (81%), Gaps = 56/1156 (5%)
Strand=Plus/Plus
Query 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60
|||||||||||||| ||||||| |||||||| || ||||||||| || ||||||
Sbjct 1 ATGATATGCGAAGAGGCATATC---ATCAGCAACCGCAAATACAAAAGGAACAAATGATG 57
Query 61 ACAATGATGATGATGGA-C-TTG-AGT-A-CATC-AC-CACCATCATCACCACT-T--TC 110
|| |||||||||||||| | | ||| | |||| || | | ||||||| | | ||
Sbjct 58 ACTATGATGATGATGGATCAACGTAGTAATCATCAACGGA-AAAAATCACCATTATCGTC 116
Query 111 ACCATC--CT---T-ATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACT 164
||||| || | ||| ||||| |||||||||| |||||| || ||||||||||| ||
Sbjct 117 GCCATCATCTCCATCATCACCAAAATCACCATCATTCAATAATAATGAGGAAGAGAGGCT 176
Query 165 AGAGGTTGTGAATTTGAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTT 224
||||||||||||||||||||| |||||||| | |||||||| |||||||| ||||||||
Sbjct 177 AGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAATCCTTCACTCAATTT 236
Query 225 GGCAAATATTTGCAAGCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATC-TC 283
|| | |||||||||||||||||||||||||||||| || ||| ||||||||||| |
Sbjct 237 AGCTCAGATTTGCAAGCTTGATCTCTCCAACAATCATCTCCAGACTATACCAGAATCAT- 295
Query 284 TAACAGCAAGATTACTCAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTC 343
||||||| ||| ||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 296 TAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAATCAGATCAAAGCTC 355
Query 344 TTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGA-TCCTTAATGTCTCCGGCAACTTT 402
|||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||
Sbjct 356 TTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTC-TCAATGTCTCCGGCAACTTT 414
Query 403 CTCGTTTCCCTCCCCCAAA-CTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAA 461
|| || ||| ||||| ||| |||| ||| |||||||||| || ||||||||||| || ||
Sbjct 415 CTTGTATCCTTCCCC-AAATCTATCCAACATTGCAGGTCTCTGGAAGAACTAAATGCAAA 473
Query 462 CTTCAACGAGCTGATTAGATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAA-A 520
||||||| | || || |||||||||||| ||| || || ||||| |||||||| || |
Sbjct 474 CTTCAACAAACTCATCAGATTACCAGACTCCATTGGATTTGAACTCACCAATCT-AAGGA 532
Query 521 AGCTCTGTGTCAACTCAAACAAGCTCATTAGCCTACCAGC-CACCATCAC-CTGCCTCAC 578
|||||| | ||||||| |||||||| ||||| || ||| | | |||| || | ||||||
Sbjct 533 AGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCA-CTCTCCATTACTCA-CCTCAC 590
Query 579 TTCCCTGCGTGTCCTCGATGCTCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGA 638
|| || ||||||||||| ||||||||||| ||||| ||||| ||||| || || |||||
Sbjct 591 ATCTCTCCGTGTCCTCGACGCTCGTCTCAACTGCCTCATGATTCTCCCAGATGATCTCGA 650
Query 639 GAACCTCATCAACCTCGAAATCCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCT 698
||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| |||||
Sbjct 651 GAATCTCATCAACCTCGAGATTCTCAATGTCAGCCAGAATTTCCAGTATCTTTCCGCTCT 710
Query 699 TCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGAT 758
||||||||| || || ||| | |||||||| | || || ||| ||||||||||||||||
Sbjct 711 TCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTACAACAAGAT 770
Query 759 AACAGTGTTGCCTGAGTCTATTGGATGCATGAGGCGCCTACGAAAACTGAGCGCGGAAGG 818
|| || || |||||||| ||||| |||||||| | || | || ||||| | |||||
Sbjct 771 CACTGTATTACCTGAGTCCATTGGCTGCATGAGAAGGTTAAGGAAGCTGAGTGTTGAAGG 830
Query 819 AAACCCACTCGTCTCCCCACCCATTGAGGTTG-TGGAACAGAG-CTTGCATGCGGTGCGA 876
|||||| ||||| ||||| ||||| ||||| | |||| |||| || ||| | |||| ||
Sbjct 831 AAACCCGCTCGTGTCCCCGCCCATCGAGGT-GATGGAGCAGAATCT-GCAGGTGGTGAGA 888
Query 877 GAGTATCTGAGC-CAAAAGATGAATGGTAAACTGGTGAAC-AC-CGCA-GCAAAGAAGAA 932
|||||||||| | |||||||||||||| | || || | | || ||||| |||||
Sbjct 889 GAGTATCTGA-CACAAAAGATGAATGG-AGGCTCACCAAGGAGTC-CAAGCAAA-AAGAA 944
Query 933 GACATGGGGTTTCCGTAAACTAGTCAAGTACGGGACATTCAATGGCAGATCAAGG-GTTT 991
| | ||||| ||| ||||| | || ||||| ||||| ||||||||| ||||||| | |
Sbjct 945 GTCTTGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAGCT- 1003
Query 992 GGACCAGGGAAGAGCGAGAAGGGCTCATCATGCCTGAGTACCGTC-CCATTGATA-TCCT 1049
||| || || ||| | |||||| | ||||||||||||||||| | |||| || | || |
Sbjct 1004 GGAATAGAGAGGAGAGGGAAGGGTTTATCATGCCTGAGTACCG-CGCCATCGACAGTCTT 1062
Query 1050 AACTTCCACCAAG-T-TTCCTGTGAC-GTGCTCACCTCGACGTCTCTTCTCCCCAAGAAC 1106
|||| || || | ||| || || || ||| || || |||||||| || ||||||||
Sbjct 1063 G-CTTCG-CCTAGGTATTC-TG-GAATGTTCTCTCCACGCCGTCTCTTTTCTCCAAGAAC 1118
Query 1107 CTATTTCAGCAGATAA 1122
||||||||||||||||
Sbjct 1119 CTATTTCAGCAGATAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5