BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29890.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889135 jgi|Araly1|889135|Al_scaffold_0007_1121 1873 0.0
Ahg491768 jgi|Araly1|491768|fgenesh2_kg.7__1201__AT4G29900.1 134 2e-30
> Ahg889135 jgi|Araly1|889135|Al_scaffold_0007_1121
Length=1269
Score = 1873 bits (1014), Expect = 0.0
Identities = 1187/1272 (93%), Gaps = 6/1272 (0%)
Strand=Plus/Plus
Query 36 ATGATGACCACGTTAACGGCGACAGTGCCGGAATTTCTACCCCCGTCGCTAAAATCCACC 95
||| ||||||| |||| |||| | ||||||||||| | | | |||||||||||| |||||
Sbjct 1 ATGGTGACCACATTAAGGGCGTCGGTGCCGGAATTCCCATCACCGTCGCTAAAAACCACC 60
Query 96 AGAGGATATTTCAATTCTCATAGTGAATTTGGCGTTTCAATCTCTAAATTTAGTCGGAGA 155
||||||||||||||||||||| |||| |||||||||||| | ||| ||||| ||||||||
Sbjct 61 AGAGGATATTTCAATTCTCATGGTGATTTTGGCGTTTCAGTGTCTCAATTTGGTCGGAGA 120
Query 156 AGATTTCACAATCCGACCAGAGTCTTCGCCGTTTCAGATATCAGTAAGC-TCGTGACGGA 214
||||||| ||| |||| |||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 121 AGATTTCTCAACCCGAGCAGAGTCTTCGCCGTTTCAGATATCAATAAGCAT-GTGACGGA 179
Query 215 GTTTGATCCGAAGATTCCATTGGAGAGAGCATCTACTCCGCCGAGCTCGTGGTACACTGA 274
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTGATCCGAAGATTCCGTTGGAGAGAGCATCTACTCCGCCGAGCTCGTGGTACACTGA 239
Query 275 TCCTCAATTCTACAGTTTCGAGCTCGATCGTGTCTTCTATGGAGGATGGCAAGCCGTAGG 334
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTAAATTCTACAGTTTCGAGCTTGATCGTGTCTTCTATGGAGGATGGCAAGCCGTAGG 299
Query 335 CTACTCTGATCAGATTAAGGAGAGTCGTGACTTTTTCACCGGGAGGCTTGGAGATGTAGA 394
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 300 TTACTCTGATCAGATCAAGGAGAGTCGTGACTTTTTCACCGGGAGGCTTGGGGACGTAGA 359
Query 395 TTTTGTTGTGTGTAGAGATGAGAATGGAAAGATACATGCTTTCCATAATGTATGCTCTCA 454
| ||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||
Sbjct 360 GTATGTTGTGTGTAGAGAGGATAATGGAAAGATTCATGCTTTCCATAATGTATGTTCTCA 419
Query 455 CCATGCCTCGATCTTGGCTTCTGGAAATGGGAGAAAGTCTTGTTTTGTTTGCCTTTATCA 514
|||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 420 CCATGCTTCTATCTTGGCTTCTGGAAATGGGAGGAAGTCTTGTTTTGTTTGCCCTTATCA 479
Query 515 TGGATGGACTTATAGCTTGAGTGGATCGCTTGTCAAAGCTACTAGAATGAGTGGGATACA 574
||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 480 TGGATGGACGTATAGTTTGAGTGGATCGCTTGTCAAAGCTACTAGAATGAATGGGATAGA 539
Query 575 GAATTTTTCTTTAAGTGAAATGGGACTGAAACCTCTAAGAGTGGCTGTGTGGGGACCTTT 634
||| ||| | ||||||||||||||||| |||||||||| ||| ||||| |||||||||||
Sbjct 540 GAACTTTGCATTAAGTGAAATGGGACTCAAACCTCTAAAAGTAGCTGTATGGGGACCTTT 599
Query 635 TGTGCTTCTCAAGGTGACTGC-AGCCACATCGAGGAAGGGAGAAGTTGAGACCGATGAAT 693
||| ||||||||||||||| | ||||||||||||| | |||||||||||||| |||| ||
Sbjct 600 TGTTCTTCTCAAGGTGACT-CAAGCCACATCGAGGGACGGAGAAGTTGAGACTGATGGAT 658
Query 694 TAGTGGCATCAGAATGGCTTGGTACTTCCGTGGGGAGGTTGAGCCAAGGTGGAGTTGATT 753
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TAGTGGCATCAGAATGGCTTGGTACTTCTGTGGGGAGGTTGAGCCAAGGTGGAGTTGATT 718
Query 754 CCCCGCTTAGTTATATATGCAGACGTGAATACACCATTGATTGTAATTGGAAGGTGTTCT 813
|||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 CCCCACTTAGTTACATATGCAGACGTGAATACACCATTCATTGTAATTGGAAGGTGTTCT 778
Query 814 GTGATAACTACTTAGATGGTGGCTATCATGTACCTTATGCACATAAAGGTTTGATGTCGG 873
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGATAACTACTTAGATGGCGGCTATCATGTACCTTATGCACATAAAGGTTTGATGTCGG 838
Query 874 GACTTGATCTCGAAACCTATTCTACAACGATATTCGAAAAGGTTAGTATCCAAGAATGTG 933
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCCTTGATCTCGAAACCTATTCTACAACGATATTCGAAAAGGTTAGTATCCAAGAATGTG 898
Query 934 GAGGTGGTTCAAAGGTTGGCGAAGACGGTTTTGATAGGCTTGGATCTGAAGCTCTATACG 993
|||||||||| |||||| | ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 899 GAGGTGGTTCCAAGGTTTGTGAAGACGGTTTCGATAGGCTTGGGTCTCAAGCTCTATACG 958
Query 994 CGTTT-GTCTACCCAAATTTCATGATAAATAGGTATGGACCTTGGATGGACACCAATCTA 1052
| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 959 C-TTTCGTCTACCCAAATTTCATGATAAATAGGTATGGACCTTGGATGGACACGAATTTA 1017
Query 1053 GTGCTACCTTTAGGACCAAGGAAATGTAAAGTTGTCTTCGATTATTTTCTTGATCCTTCT 1112
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 GTGCGACCATTAGGACCAAGGAAATGTAAAGTTGTCTTCGATTATTTTCTTGATCCTACA 1077
Query 1113 TTAAAGGATGATGAAGCTTTCATCAAGAGAAGTTTGGAAGAAAGCGATAGAGTTCAGATG 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1078 TTAAAGGATGATGAAGCTTTCATCAAGAGAAGTTTGGAAGAAAGCGATAGAGTTCAGGTG 1137
Query 1173 GAAGATGTTATGTTGTGTGAGAGTGTTCAGAGGGGTCTCGAATCTCAAGCCTATGACAAA 1232
||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 1138 GAAGATGTTGTGTTGTGTGAGAGTGTTCAAAGGGGTATCGAATCTCAGGCCTATGACAAA 1197
Query 1233 GGAAGATATGCTCTTGTGGAGAAACCAATGCATCACTTCCATTGTTTGCTACATCACAAT 1292
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1198 GGAAGATATGCTCTTGTGGAGGAACCAATGCACCACTTCCATTGTTTGCTACATCACAAT 1257
Query 1293 CTCAAACTGTGA 1304
|| |||||||||
Sbjct 1258 CTTAAACTGTGA 1269
> Ahg491768 jgi|Araly1|491768|fgenesh2_kg.7__1201__AT4G29900.1
Length=3560
Score = 134 bits (72), Expect = 2e-30
Identities = 92/101 (91%), Gaps = 4/101 (4%)
Strand=Plus/Minus
Query 1283 ACATCACAATCTCAAACTGTGAACATA--T--ATGTATGTATTTATGTGAATATTCTACA 1338
||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||
Sbjct 3560 ACATCACAATCTCAAACTGTGAAAATATTTGCATATATGTATTTATGTGAATATTCTACA 3501
Query 1339 GTTCTACTCTCTCTGCACCAAACATAAAATGAAGCCTCTTT 1379
|||||| | |||||||||||| |||||||||||||||||||
Sbjct 3500 GTTCTATTATCTCTGCACCAAGCATAAAATGAAGCCTCTTT 3460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5