BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29905.1

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491767 jgi|Araly1|491767|fgenesh2_kg.7__1200__AT4G29905.1         324    6e-88


> Ahg491767 jgi|Araly1|491767|fgenesh2_kg.7__1200__AT4G29905.1
Length=299

 Score =  324 bits (175),  Expect = 6e-88
 Identities = 198/209 (95%), Gaps = 1/209 (0%)
 Strand=Plus/Plus

Query  202  ATGTGTTTGGAAGTTGTGTATCATGAAGAGAAGACGGAGCTTGGTCGGCAACAAGCACCA  261
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  1    ATGTGTTTGGAAGTTGTGTATCATGAAGAGAAGACGGAGCTAGGTCGGCAACAAGCACCG  60

Query  262  GGGATGTGTCCTTATTGCGGCGGAAAAGTATCGGCGGTGGATATAGAGACGAAGTGGTTG  321
            ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  61   GGGATGTGTCCATATTGCGGCGGAAAAGTATCGGCGGTTGATATAGAGACAAAGTGGTTG  120

Query  322  TTCTGTTTCTTACCACTTTGTTTCAAGGTCAAACGCAAATACTCATGTTCTTCGTGCGAG  381
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| 
Sbjct  121  TTCTGTTTCTTACCACTTTGTTTCAAGGTCAAACGCAAGTACTCTTGTTCTTCCTGCGAC  180

Query  382  CGTCATCTCGTCTTGTATTATTGAAGAAA  410
            |||| |||||||||||||||||||| |||
Sbjct  181  CGTCGTCTCGTCTTGTATTATTGAA-AAA  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26152321062


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5