BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29910.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889132 jgi|Araly1|889132|Al_scaffold_0007_1118 2362 0.0
> Ahg889132 jgi|Araly1|889132|Al_scaffold_0007_1118
Length=1608
Score = 2362 bits (1279), Expect = 0.0
Identities = 1500/1606 (93%), Gaps = 18/1606 (1%)
Strand=Plus/Plus
Query 142 AAAGAGGAGAGTTCGAAAGTCACTCGAAGAAGCACTAGGTCATCAGCTTCTGTAACTGTT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAAGAGGAGAGTTCGAAAGTCACTCGAAGAAGCACTAGGTCATCAGCTTCTGTAACTGTT 66
Query 202 GAGAACT-CAGAACCTATTGAATCCCACACACCAACCATTGATGATCTCACATTTGGGGA 260
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 67 GAGAA-TCCAGAACCTATTGAATCCCACCCACCAACCATTGATGATCTCACATTTGGGGA 125
Query 261 AGAATCAATCACAATT-GATGCTGTTCTATCTAATTTTCCAGGCAGACGCTCTCAGATTT 319
||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 126 TGAATCAATCAC-TTTGGATGCTGTTCTATCTGATTTTCCTGGCAGACGCTCTCAGATTT 184
Query 320 TCGACTTTATTCGACTTATGGGGCCGTTAGATTGCCCTACTCTTCCAATAATGATCTATG 379
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 185 TCGACTTTATTCGACTTATGGGCCCGTTGGATTGCCCTACTCTTCCAATAATGATCTATG 244
Query 380 GAGGTGCTTCTACGGGAAAAACCAGTGTTGTTCTTCAGGTGCTCAGGCATCTCAATCGTC 439
|||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 245 GAGGCGCATCTACTGGAAAAACCAGTGTTGTTCTTCAGGTGCTCAGGCATCTCAATCGCC 304
Query 440 CCTTTGTTTATTCAAGCTGTCGTACGTGTTACAATCCCCGTATCTTGTTTGAGTCGATTC 499
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 305 CCTTTGTTTATTCAAGCTGTCGTACATGTTACAATCCGCGTATCTTGTTTGAGTCGATCC 364
Query 500 TGAATCAGTCGTTGCTACATAGGAAGTGTTCTTTAAACGGGTATTCTAGTGCGAAACGAT 559
||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 365 TGAATCAGTTGTTGCTACATAGGAAATGTTCTTCAAACGGGTATTCTAGTGCGAAACGAT 424
Query 560 GTGACAAGCCATCTGATTTTGTCAACTTGCTTCGTGAAGCCCTTAGTAGTGTGATAAAGA 619
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 425 GTGACAAGCCATCTGATTTTGTCAACTTGGTTCGTGAAGCCCTTAGTAATGTGATAAAGA 484
Query 620 CTCTCGAGTCTACTTCCGAAACCTCAAGATC-AGATAAGCCGGATGAAAAACCCATGGGG 678
||||||||||| |||||| |||||||||| | | ||||||| ||||||||||||||||||
Sbjct 485 CTCTCGAGTCTCCTTCCGGAACCTCAAGA-CTAAATAAGCCAGATGAAAAACCCATGGGG 543
Query 679 AAGATGGTGTACTTAATACTTGATAATGTGGATCTTATCAGAGACTGGGATAAAGGCACC 738
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 544 AAGATGGTGTACTTAATACTTGATAATGTGGATCTTATCAGAGACTGGGACAAAGGGAGT 603
Query 739 ATCATTCTGCAGTTTCTTTTCAGTTTGTATACTGTTTTGAAGATGCCTCAACTTGGTATA 798
|| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 604 ATGATTCTTCAGTTTCTTTTCAGTTTGGATTCTGTTTTGAAGATGCCTCAACTTGGTATA 663
Query 799 ATACTTATCAGTGGTTTGCCACCAGATGTGTATTACTCAAACATGGGATACACAGATCCT 858
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 664 GTACTTATCAGCGGATTGCCACCAGATGTGTATTACTCAAACATGGGATACACAGACCCT 723
Query 859 ATACCTCTTTATTTTCC-TGAGTATTCTGAAGAGGATCTTCGTCAAATTTTCTTGAGAAA 917
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATACCTCTTC-TTTTCCCTGAGTATTCTGAAGAGGATCTTCGTCAAATTTTCTTGAGAAA 782
Query 918 TCAACCTAACCGAAAATTGTACTCTGCATTCCTTGACGTTGTGTTGAAACCATTCTGTAG 977
|||| |||||| |||| |||||||||||||||| |||| |||||||| | ||||||||||
Sbjct 783 TCAAGCTAACCCAAAACTGTACTCTGCATTCCTCGACGCTGTGTTGAGATCATTCTGTAG 842
Query 978 AGTCACCAGGAGAGTTGAGGAACTGTCTACTACCTTCTCATTATTGTTCAGAAAGTTTTG 1037
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||
Sbjct 843 AGTCACCAGGAGAGTTGAGGAACTTTCCACTACCTTCTCATCATTGTTCAGAAAGTATTG 902
Query 1038 TGAGCCACTTGATGATTTAGGGATTTCACCAAATGAAGACATGAAGAGAAGGCTATATAG 1097
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 903 CGAACCGCTTGATGATTTAGGGATTTCACCTAATGAAGACATGAAGAGAAGGCTGTATAG 962
Query 1098 CCATCTTAAGCCGCTTATTGCTCATTGTTTAAATGA-GATATTCAGGGTCTCTAGTCACC 1156
|||||||| ||| |||| |||| |||||||||||| | ||||||||||||| | |||||
Sbjct 963 TCATCTTAAACCGTTTATAGCTCCTTGTTTAAATGATG-TATTCAGGGTCTCCACTCACC 1021
Query 1157 CTCATGATGGCGAAACCAGAGGCGAGAGAAGGCAGAAAGCCAGCTACAGTTCTGAAAACC 1216
|||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1022 CTCATGATGGTGAAACCAGAGGCGAGAGAAGGCAGAAAGTCAGCTTCAGCTCTGAAAACC 1081
Query 1217 GTGAAGAACTTGAAATATTGGACTTCCATATGTCTACTTCAGCAAAGTTTCTTCTTCTTT 1276
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1082 GTGAAGAACTTAAAATATTGGACTTCCATATGTCTACTTCAGCAAAGTATCTTCTTATTG 1141
Query 1277 CGGCATTTCTCGCTTCGAGAAACCCAGCAACGCTAGACGCGTCAATGTTTGACTCCACAG 1336
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1142 CGGCATTTCTTGCTTCGAGAAACCCAGCAACGCTAGACGCGTCGATGTTTGACTCCACAG 1201
Query 1337 GGGGAATGGATAATCGTAAAAGAAAGCGGAAGGCCTCTGAGAAATCAATGGAAAAGAAGG 1396
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GAGGCATGGATAATCGTAAAAGAAAGCGGAAGGCCTCTGAGAAATCAATGGAAAAGAAGG 1261
Query 1397 AAATTGCAGAGCAGGAAGCAGTCATGAAAGGACCTGGAAGCTTTCCACTGGAAAGACTAT 1456
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1262 AAATTGCAGAACAGGAAGCAGTCATGAAAGGACCTGGAAGCTTTCCGCTGGAAAGATTAA 1321
Query 1457 TGGCGATATTCCAATGTATTGCCTCCGTTGGAGATTCTTCATTTGGCGAAGAGGACGAAG 1516
||||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 1322 TGGCGATATTCCAGTGTATTGCCTCTGTTGGAGATTCTTCATTTGGGGAAGAGAACGAAG 1381
Query 1517 -A-A-GAAGAA-AACAC--AACGGGTTACGACAA-AGAGAATAACAATCTGATGTCTGAT 1569
| | |||||| || || |||||||||||| || |||||||||||||||||||||||||
Sbjct 1382 GAGAAGAAGAAGAAGACGCAACGGGTTACGA-AAGAGAGAATAACAATCTGATGTCTGAT 1440
Query 1570 ATTCTGCTGCAAGTGTCAAGTCTATGTGATGCTAACTTTTTAATCAAAAGCGGAAGCTGC 1629
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1441 ATTCTGCTGCAAGTGTCAAGTCTTTGTGATGCAAACTTTTTAATCAAAAGCGGAAGCTGC 1500
Query 1630 CCATTAGAAGGTTCTATTAGGTACCGTTCTATGGTCTCTGAAGATCTGGCTCAGAAGGTT 1689
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1501 CCATTAGAAGGTTCTATTAGGTACCGTTCTATGGTCTCTGAATATCTGGCTCTGAAGGTT 1560
Query 1690 GCAAAAAGTCTTAGCTTTCCACTATCCAAATACTTGTACAGAAGAT 1735
|| ||||| || |||||||||||| |||||||||||||||||||||
Sbjct 1561 GCGAAAAGCCTCAGCTTTCCACTAGCCAAATACTTGTACAGAAGAT 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5