BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29930.3 Length=891 Score E Sequences producing significant alignments: (Bits) Value Ahg491763 jgi|Araly1|491763|fgenesh2_kg.7__1196__AT4G29930.1 1149 0.0 > Ahg491763 jgi|Araly1|491763|fgenesh2_kg.7__1196__AT4G29930.1 Length=922 Score = 1149 bits (622), Expect = 0.0 Identities = 733/785 (93%), Gaps = 13/785 (2%) Strand=Plus/Plus Query 1 AGTACACTCAATagaaagacacaaagaaagaaagaaagga-caa-acagaa-ataacaaa 57 |||||||||||||||||||||| |||||||||||||||| ||| | | || | |||||| Sbjct 1 AGTACACTCAATAGAAAGACAC--AGAAAGAAAGAAAGGACCAACAAAAAACAAAACAAA 58 Query 58 accttccatttcaagaaagCATCATCTTTGTGTGTCCGAAAAATGGAAGATCTCGACCAT 117 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 59 ACCTTCCATTTCAAGAAAGCATCGTCTTTGTGTGTCCGAAAAATGGATGATCTAGACCAT 118 Query 118 GAGTACAAGAATTACTGGGAAACCACAATGTTCTTCCAGAATCAAGAACTCGAATTTGAC 177 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 119 GAGTACAAGAATTACTGGGAAACCACAATGTTCTTCCAAAATCAAGAACTCGAATTTGAC 178 Query 178 AGTTGGCCGATGGAGGAAGCGTTTTCGGGTTCCGGCGAGTCGAGTTCGCCAGACGGAGCG 237 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 179 AGTTGGCCGATGGAGGAAGCGTTTTCGGGTTCCGGCGACTCGAGTTCGCCTGACGGAGCA 238 Query 238 GCAACGTCGCCGGCTTCTTCGAAGAACGTTGTCTCCGAGAGAAACAGACGGCAAAAGCTT 297 ||||||||||| || |||||||| |||||||| || |||||||||||||| ||||||||| Sbjct 239 GCAACGTCGCCAGCATCTTCGAAAAACGTTGTATCTGAGAGAAACAGACGACAAAAGCTT 298 Query 298 AATCAGAGACTTTTTGCTCTCCGGTCAGTTGTTCCCAATATAAGCAAGTTGGACAAGGCA 357 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 299 AATCAGAGACTTTTTGCTCTCCGATCAGTCGTTCCCAATATAAGCAAGTTGGACAAGGCA 358 Query 358 TCTGTCATCAAAGATTCTATCGACTATATGCAAGAACTTATTGATCAAGAGAAGACTCTA 417 ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| Sbjct 359 TCTGTCATCAAAGATTCAATCGACTACATGCAAGAGCTTATTGATCAAGAGAAGAGGCTA 418 Query 418 GAAGCAGAGATCAGAGAGCTAGAATCACGGTCAACATTGCTAGAAAATCCGGTAAGAGAT 477 ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| Sbjct 419 GAAGCAGAGATCAGAGAGCTAGAATCACGATCATTATTGCTAGAAAATCCGATAAGAGAT 478 Query 478 TACGATT--G-C---AATTTTGCGGAAACTCATCTGCAAGATTTCTCAGACAATAATGAC 531 ||||||| | | |||||||| |||| ||| ||||||||||||||||||||||||| | Sbjct 479 TACGATTGCGCCAATAATTTTGCTGAAAATCAGCTGCAAGATTTCTCAGACAATAATGGC 538 Query 532 ATGAGATCAAAAAAGTTTAAGCAGATGGATTACAG-TACTAGAGTACAACACTACCCCAT 590 |||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||| Sbjct 539 CTGAGATCAAAAAAGTTCAAGCATATGGATTAC-GATACTAGAGTACAACACTACCCCAT 597 Query 591 TGAAGTTCTCGAAATGAAAGTGACATGGATGGGAGAGAAGACGGTAGTGGTATGCATAAC 650 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 598 TGAAGTTCTCGAAATGAAGGTGACATGGATGGGAGAGAAGACAGTAGTGGTATGCATAAC 657 Query 651 ATGTAGCAAGAAAAGAGAGACAATGGTGCAGCTTTGTAAAGTGTTGGAGTCTTTGAATCT 710 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 658 ATGTAGCAAGAAAAGAGAAACAATGTTGCAGCTTTGTAAAGTGTTGGAGTCTTTGAATCT 717 Query 711 CAACATTCTCACTACTAActtctcttccttcacctctcgtctctccaccaccctcttcct 770 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 718 CAACATTCTCACTACTAACTTCTCTTCCTTCACCTCTCGTCTCTCCACCACTCTCTTCCT 777 Query 771 ccagg 775 ||||| Sbjct 778 CCAGG 782 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33014446122 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5