BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29930.3
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491763 jgi|Araly1|491763|fgenesh2_kg.7__1196__AT4G29930.1 1149 0.0
> Ahg491763 jgi|Araly1|491763|fgenesh2_kg.7__1196__AT4G29930.1
Length=922
Score = 1149 bits (622), Expect = 0.0
Identities = 733/785 (93%), Gaps = 13/785 (2%)
Strand=Plus/Plus
Query 1 AGTACACTCAATagaaagacacaaagaaagaaagaaagga-caa-acagaa-ataacaaa 57
|||||||||||||||||||||| |||||||||||||||| ||| | | || | ||||||
Sbjct 1 AGTACACTCAATAGAAAGACAC--AGAAAGAAAGAAAGGACCAACAAAAAACAAAACAAA 58
Query 58 accttccatttcaagaaagCATCATCTTTGTGTGTCCGAAAAATGGAAGATCTCGACCAT 117
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 59 ACCTTCCATTTCAAGAAAGCATCGTCTTTGTGTGTCCGAAAAATGGATGATCTAGACCAT 118
Query 118 GAGTACAAGAATTACTGGGAAACCACAATGTTCTTCCAGAATCAAGAACTCGAATTTGAC 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 GAGTACAAGAATTACTGGGAAACCACAATGTTCTTCCAAAATCAAGAACTCGAATTTGAC 178
Query 178 AGTTGGCCGATGGAGGAAGCGTTTTCGGGTTCCGGCGAGTCGAGTTCGCCAGACGGAGCG 237
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 179 AGTTGGCCGATGGAGGAAGCGTTTTCGGGTTCCGGCGACTCGAGTTCGCCTGACGGAGCA 238
Query 238 GCAACGTCGCCGGCTTCTTCGAAGAACGTTGTCTCCGAGAGAAACAGACGGCAAAAGCTT 297
||||||||||| || |||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 239 GCAACGTCGCCAGCATCTTCGAAAAACGTTGTATCTGAGAGAAACAGACGACAAAAGCTT 298
Query 298 AATCAGAGACTTTTTGCTCTCCGGTCAGTTGTTCCCAATATAAGCAAGTTGGACAAGGCA 357
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 299 AATCAGAGACTTTTTGCTCTCCGATCAGTCGTTCCCAATATAAGCAAGTTGGACAAGGCA 358
Query 358 TCTGTCATCAAAGATTCTATCGACTATATGCAAGAACTTATTGATCAAGAGAAGACTCTA 417
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||
Sbjct 359 TCTGTCATCAAAGATTCAATCGACTACATGCAAGAGCTTATTGATCAAGAGAAGAGGCTA 418
Query 418 GAAGCAGAGATCAGAGAGCTAGAATCACGGTCAACATTGCTAGAAAATCCGGTAAGAGAT 477
||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 419 GAAGCAGAGATCAGAGAGCTAGAATCACGATCATTATTGCTAGAAAATCCGATAAGAGAT 478
Query 478 TACGATT--G-C---AATTTTGCGGAAACTCATCTGCAAGATTTCTCAGACAATAATGAC 531
||||||| | | |||||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct 479 TACGATTGCGCCAATAATTTTGCTGAAAATCAGCTGCAAGATTTCTCAGACAATAATGGC 538
Query 532 ATGAGATCAAAAAAGTTTAAGCAGATGGATTACAG-TACTAGAGTACAACACTACCCCAT 590
|||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 539 CTGAGATCAAAAAAGTTCAAGCATATGGATTAC-GATACTAGAGTACAACACTACCCCAT 597
Query 591 TGAAGTTCTCGAAATGAAAGTGACATGGATGGGAGAGAAGACGGTAGTGGTATGCATAAC 650
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 TGAAGTTCTCGAAATGAAGGTGACATGGATGGGAGAGAAGACAGTAGTGGTATGCATAAC 657
Query 651 ATGTAGCAAGAAAAGAGAGACAATGGTGCAGCTTTGTAAAGTGTTGGAGTCTTTGAATCT 710
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 ATGTAGCAAGAAAAGAGAAACAATGTTGCAGCTTTGTAAAGTGTTGGAGTCTTTGAATCT 717
Query 711 CAACATTCTCACTACTAActtctcttccttcacctctcgtctctccaccaccctcttcct 770
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 CAACATTCTCACTACTAACTTCTCTTCCTTCACCTCTCGTCTCTCCACCACTCTCTTCCT 777
Query 771 ccagg 775
|||||
Sbjct 778 CCAGG 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5