BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29940.1
Length=2811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945006 jgi|Araly1|945006|scaffold_701235.1 3210 0.0
> Ahg945006 jgi|Araly1|945006|scaffold_701235.1
Length=2388
Score = 3210 bits (1738), Expect = 0.0
Identities = 2052/2196 (93%), Gaps = 51/2196 (2%)
Strand=Plus/Plus
Query 191 TCTCGGTGATCGGGGAATTCGATATGGAGGAGAGTGAAACAAAGGGGAGAATCAGTCAAG 250
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TCTCGGTGATC-GGGAATTCGATATGGAGGAGAGTGAAACAAAGGGGAGAATCAATCAAG 59
Query 251 AAACTGATAAGGCTTGTGTTTCAGTTGAGAGAATTGGGTCTACTTTACTCTCATCATTTG 310
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAACTGAAAAGGCTTGTGTTTCAGTTGAGAGAATTGGGTCTACTTTACTCTCATCATTTG 119
Query 311 TGAAGAAAGGTAAAGAAGTATCAAATAAGAGAAA-TTCTAAGCAGAATAAGCG-AAAAGC 368
|||||||||||||||||||| ||||||||||||| || ||||| ||||||||| |||| |
Sbjct 120 TGAAGAAAGGTAAAGAAGTACCAAATAAGAGAAACTT-TAAGCCGAATAAGCGTAAAA-C 177
Query 369 GGAAGAAGA-ACTCTGTTCGAAATCAAGAACCAAGAAGTACTCTCGGGGATGGGTCCGTT 427
||||||||| | ||||||||||||| |||| ||||||||| ||||| |||||||| ||||
Sbjct 178 GGAAGAAGATA-TCTGTTCGAAATCCAGAAACAAGAAGTATTCTCGAGGATGGGTTCGTT 236
Query 428 GTGAGGAAATGGAGGAGGAGAAGGTTAAGAAAACAAGAAAGAGGAAAAGTAAGAGACAGC 487
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 237 GTGAGGAAATGGAGGAGGTGAGGGTTAAGAAAACAAGGAAGAGGAAAAGTAAGAGACAGC 296
Query 488 AAAAGGATAATAAGGTTGAGGTTGATGATTCTTTAAGGTTGCAAAGGAGGACAAGGTATT 547
|||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||
Sbjct 297 AAAAGGATAATAAGGTTGAGGTAGATGATTCGCTAAGGTTGCAGAGGCGGACAAGGTATT 356
Query 548 TGCTCATTAAGATGAAGATGCAGCAGAATCTTATCGATGCATACGCAACTGAAGGTTGGA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGCTCATTAAGATGAAGATGCAGCAGAATCTTATCGATGCATACGCAACTGAAGGTTGGA 416
Query 608 AAGGTCAGAGCCGGGAAAAGATAAGACCAGACAAGGAGCTTGAGAGAGCCCGGAAAGAGA 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 AAGGTCAGAGCCGGGAAAAGATAAGACCAGACAAGGAGCTTGAGAGAGCCCGGAAACAGA 476
Query 668 TCTTAAACTGCAAGCTTGGACTACGCGACGCCATTCGCCAACTGGATCTGCTTAGTTCTG 727
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 477 TCTTAAACTGCAAGCTTGGACTACGCGACGCCATTTGCCAGCTGGATCTGCTTAGTTCTG 536
Query 728 TGGGAAGCATGGAAGAGAAAGTGATAGCTTCAGATGGATCTATTCATCATGATCATATAT 787
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 537 TGGGAAGCATGGAAGAGAAAGTGATAGCTCCAGATGGATCTATTCATCATGACCATATAT 596
Query 788 TTTGTGCAGAATGCAATTCTCGAGAAGCTTTTCCAGACAATGATATAATACTTTGTGATG 847
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTTGTGCGGTATGTAATTCTCGAGAAGCTTTTCCAGACAATGATATAATACTTTGTGATG 656
Query 848 GAACGTGTAATCGAGCATTTCACCAGAAATGCCTTGACCCTCCTTTGGAAACAGAAAGCA 907
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 GAACGTGTAATCGAGCATTTCACCAGAAGTGCCTTGACCCTCCTTTGGAAACAGAAAGCA 716
Query 908 TACCTCCCGGAGATCAGGGCTGGTTTTGCAAATTTTGTGATTGCAAAATTGAAATTATCG 967
||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 717 TACCTCCCGGAGATCTGGGTTGGTTTTGCAAATTTTGTGATTGCAAAATGGAAATCATCG 776
Query 968 ACACAATGAATGCACAAATTGGAACTCATTTCCCTGTGGACAGCAACTGGCAGGATATCT 1027
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 777 ACACAATGAATGCGCAAATTGGTACCCATTTCCCTGTGGACAGCAACTGGCAGGATATCT 836
Query 1028 TCAATGAAGAAGCTAGTCTTCCTATTGGATCTGAAGCTACAGTTAACAATGAAGCAGATT 1087
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 837 TCAATGAAGAAGCTAGTCTTCCTATTGGATCTGAAGCTACACTTAACAATGAAGCAGATT 896
Query 1088 GGCCTTCGGATGACTCCAAGGATGATGATTATGACCCTGAAATGAGGGAAAACGGTGGAG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 GGCCTTCGGATGACTCCAAGGATGATGATTATGACCCTGAAATGAGGGAAACCGGTGGAG 956
Query 1148 GAAACAGCAGCAACGTTAGTGGTGATGGTGGTGGTGATAACGA---------TG---A-- 1193
|||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 957 GAAATAGCAGCAACGTTAGTGGTGATGGTGGTGGTGATAATGATGGTGGTGGTGATAATG 1016
Query 1194 A----GAAAGCATTTCAACTAGCTTGAGCTTATCATCTGATGGTGTTGCCCTTTCAACGG 1249
| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1017 ATGGTGAAAGCATTTCAACCAGTTTGAGCTTATCTTCTGATGGTGTTGCCCTTTCAACGG 1076
Query 1250 GATCATGGGAAGGCCATAGACTCAGCAATATGGTGGAGCAGTGCGAAACAAGTAATGAAG 1309
|||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||
Sbjct 1077 GATCATGGGAAGGCCATAGACTCAGCAATATGTTGGAACAATGTGAAACAAGTAATGAAG 1136
Query 1310 AAACTGTATGTGGGCCAAGACAGCGAAGGACTGTTGACTATACACAGTTGTACTATGAAA 1369
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1137 AAACTGTATGTGGGCCAAGACAGCGAAGGACTGTTGACTATACAAAGTTGTACTATGAAA 1196
Query 1370 TGTTTGGAAAGGATGCAGTTTTGCAAGAGCAAGGTAGTGAAGATGAAGACTGGGGTCCGA 1429
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 TGTTTGGAAAGGATGCAGTTTTGCAAGAACAAGGTAGTGAAGATGAAGACTGGGGTCCGA 1256
Query 1430 ATGACAGAAGGAAGAGAAAAAGGGAATCTGATGCAGGAAGCACACTTGTAACTATGTGTG 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATGACAGAAGGAAGAGAAAAAGGGAATCTGATGCAGGAAGCACACTTGTAACTATGTGTG 1316
Query 1490 AAAGCAGTAAGAAAGATCAAGATGTTGTAGAAACGCTAGAACAGAGTGAGAGAGATTCTG 1549
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1317 AAAGCAGTAAGAAAGATCAAGATGTTGTAGAAACACTGGAACAGAGTGAGAGAGATTCTG 1376
Query 1550 TCTCTGTGGAAAATAAAGGAGGTCGAAGGCGGATGTTCAGACTCCCAAGAA-ATGCAGTT 1608
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1377 TCTCTGTGGAAAATAAAGGAGGTCGAAGGCCGATGTTCAGACTCCCAA-AATATGCAGTT 1435
Query 1609 GAGAAGCTACGTCAAGTATTTGCAGAGACTGAGCTTCCCT-CAAAAGCTGTGAGGGATCG 1667
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1436 GAGAAGCTACGTCAAGTATTTGCAGAGACTGAGCTTCC-TACAAAAGCTGTGAGGGATCG 1494
Query 1668 TCTTGCAAAAGAGCTGAGTCTTGATCCAGAGAAGGTCAATAAATGGTTTAAAAATACTCG 1727
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1495 TCTTTCAAAAGAGCTGAGTCTTGATCCAGAGAAGGTCAATAAATGGTTCAAAAATACACG 1554
Query 1728 GTATATGGCACTGCGGAATAGGAAGACTGAGAGCGTGAAACAACCTGGGGATTCTAAGAC 1787
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1555 GTATATGGCACTGAGGAATAGGAAGACTGGGAGCGTGAAACAACCTGGGGATTCTAAGAC 1614
Query 1788 AGTCTCTGGAGGAGATTCTGGACCAGAAGCAGTCATGGAGAACAACACTGAAACAAATGA 1847
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1615 AGTCTCTGGAGGAGAATCTGGACCAGAAGCAGTCATGGAGAACAACACTGAAACTAATCA 1674
Query 1848 AGTTCAAGATACTTTGGAT--GACACTGTTCCACCCGGATTT---GA--C-GCTACAAAT 1899
||||||||||||||||||| |||| ||||||||||||||| || | |||||||||
Sbjct 1675 AGTTCAAGATACTTTGGATATGACA--GTTCCACCCGGATTTAATGATTCCGCTACAAAT 1732
Query 1900 CA-AAACATACTCTC-CCCATGTAATAACAACCAGGAGGAATTTCAACAGGAAAATGTCT 1957
|| ||| || ||||| ||| |||| |||||||||||||||| ||||||||| |||||||
Sbjct 1733 CAGAAA-ATTCTCTCTCCC-TGTACTAACAACCAGGAGGAAATTCAACAGGCCAATGTCT 1790
Query 1958 CTTTTCCTTCACCCACAGATGAAAGTCAACAGTATCTGGAACAAAACGATTCTTCTTTCG 2017
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1791 CCTTTCCTTCACCCACAGATGAAAGTCAACATTATCTGGAACAAAACGACTCTTCTTTCG 1850
Query 2018 TTCTAGTGCCACATGAAAAGCAAAGCAGCGAAATTAGCTTAAAGACGGCTGTAGAGGAGA 2077
|||||||||||||||| ||| |||||| ||||| |||||||||||||| ||||||||||
Sbjct 1851 CTCTAGTGCCACATGAAGAGCTAAGCAGTGAAATGAGCTTAAAGACGGCCGTAGAGGAGA 1910
Query 2078 ATGAGACAGAAAGCAAGATGATGAAAGAGCCACATGAAGAGCTAAGCAGTGAAATGAGCC 2137
| |||||||| |||||||||| | ||||||||||||||||||||||||| ||||||| |
Sbjct 1911 AGGAGACAGAGAGCAAGATGACGGAAGAGCCACATGAAGAGCTAAGCAGCGAAATGATCT 1970
Query 2138 TAAAGACGGCTGCT-GAGGAGAAGGAGACAGAGAGCAAGATGATAGAAGAGCCACATGAA 2196
||||||| || | | ||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 1971 TAAAGACAGCGG-TAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGTGCCACAGGAA 2029
Query 2197 GAGCTAAGCA-GAGAAATGAGCTTAAAGACGGCTGTAGAGGAGAAGGAGACAGAGAGCAA 2255
|||||||| | | |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2030 GAGCTAAG-ATGTGAAACGAGCTTAAAGACAGCTGTAGAGGAGAAGGAGACAGAGAGCAA 2088
Query 2256 GATGATGGAAGAGCCACATGATGAGCTAAACAGCGAAATGAGCTTAA-GTACAGCGGTAG 2314
||||| ||||||| ||||||| ||||||| || |||||||||||||| | ||||| ||||
Sbjct 2089 GATGACGGAAGAGTCACATGAAGAGCTAAGCAACGAAATGAGCTTAAAG-ACAGCTGTAG 2147
Query 2315 AGGAGAAGGAGACAGG-GAGCAAGATGACGGAAGAG 2349
||||||||||||| || ||| |||||||||||||||
Sbjct 2148 AGGAGAAGGAGAC-GGAGAGAAAGATGACGGAAGAG 2182
Score = 697 bits (377), Expect = 0.0
Identities = 479/525 (91%), Gaps = 20/525 (4%)
Strand=Plus/Plus
Query 2106 GCCACATGAAGAGCTAAGCAGTGAAATGAGCCTAAAGACGGCTGCT-GAGGAGAAGGAGA 2164
||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 1858 GCCACATGAAGAGCTAAGCAGTGAAATGAGCTTAAAGACGGCCG-TAGAGGAGAAGGAGA 1916
Query 2165 CAGAGAGCAAGATGATAGAAGAGCCACATGAAGAGCTAAGCAGAGAAATGAGCTTAAAGA 2224
||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1917 CAGAGAGCAAGATGACGGAAGAGCCACATGAAGAGCTAAGCAGCGAAATGATCTTAAAGA 1976
Query 2225 CGGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGAGCCACATGATGAGCTAA 2284
| || ||||||||||||||||||||||||||||||||||||| |||||| || ||||| |
Sbjct 1977 CAGCGGTAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGTGCCACAGGAAGAGCT-A 2035
Query 2285 ACA-GCGAAATGAGCTT-AAGTACAGCGGTAGAGGAGAAGGAGACAGGGAGCAAGATGAC 2342
| | | |||| |||||| ||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 2036 AGATGTGAAACGAGCTTAAAG-ACAGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGAC 2094
Query 2343 GGAAGAGTCACATGAAGAGCTAAGCAACGAAATGAGCTTA--GA-AG----AGA--AG-- 2391
|||||||||||||||||||||||||||||||||||||||| || || ||| ||
Sbjct 2095 GGAAGAGTCACATGAAGAGCTAAGCAACGAAATGAGCTTAAAGACAGCTGTAGAGGAGAA 2154
Query 2392 G-AGACGGGGAGAAAGATGACGGAAGAGGAAGAATTGGAAGCAGTAATGGAGATGCTTTG 2450
| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2155 GGAGACGGAGAGAAAGATGACGGAAGAGGAAGAATTTGAAGTAGTAATGGAGATGCTTTG 2214
Query 2451 TAGAACAGAAAACAAGTTACTGGACGTGACGCAGAGGCTTGATAGATTTAAAACACCAAA 2510
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 2215 TAGAACAGAAAACAAGTTACTTGACGTGACGCAGAGGCTTGAGAGATTTAAAACACCGAA 2274
Query 2511 AGGCCGAAAAAAGTTAGGCAATTCTTCTTCTCCTTTA-CTTGAAGAAGACTCAGTAGTGT 2569
|||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||
Sbjct 2275 AGGCCGGAAAAAGTTAGGCAAGTCTTCTTCTTCTTTAACT-GAAGAAGACTCAGTAGTGT 2333
Query 2570 ATGTTCCAATAGCAGAGATCAAGGAGAAAAGGTAACAatatatat 2614
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2334 ATGTTCCAATAGCAGAGATCAAGGAGAAAAGGTAAAAATATATAT 2378
Score = 302 bits (163), Expect = 1e-80
Identities = 220/247 (89%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 2025 GCCACATGAAAAGCAAAGCAGCGAAATTAGCTTAAAGACGGCTGTAGAGGAGAATGAGAC 2084
|||||||||| ||| |||||||||||| | ||||||||| || ||||||||||| |||||
Sbjct 1939 GCCACATGAAGAGCTAAGCAGCGAAATGATCTTAAAGACAGCGGTAGAGGAGAAGGAGAC 1998
Query 2085 AGAAAGCAAGATGATGAAAGAGCCACATGAAGAGCTAAGCA-GTGAAATGAGCCTAAAGA 2143
||| |||||||||||| ||| |||||| ||||||||||| | |||||| |||| ||||||
Sbjct 1999 AGAGAGCAAGATGATGGAAGTGCCACAGGAAGAGCTAAG-ATGTGAAACGAGCTTAAAGA 2057
Query 2144 CGGCTGCT-GAGGAGAAGGAGACAGAGAGCAAGATGATAGAAGAGCCACATGAAGAGCTA 2202
| |||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2058 CAGCTG-TAGAGGAGAAGGAGACAGAGAGCAAGATGACGGAAGAGTCACATGAAGAGCTA 2116
Query 2203 AGCAGA-GAAATGAGCTTAAAGACGGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGAT 2261
|||| | ||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 2117 AGCA-ACGAAATGAGCTTAAAGACAGCTGTAGAGGAGAAGGAGACGGAGAGAAAGATGAC 2175
Query 2262 GGAAGAG 2268
|||||||
Sbjct 2176 GGAAGAG 2182
Score = 268 bits (145), Expect = 1e-70
Identities = 214/245 (87%), Gaps = 14/245 (6%)
Strand=Plus/Plus
Query 2187 GCCACATGAAGAGCTAAGCAGAGAAATGAGCTTAAAGACGGCTGTAGAGGAGAAGGAGAC 2246
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1858 GCCACATGAAGAGCTAAGCAGTGAAATGAGCTTAAAGACGGCCGTAGAGGAGAAGGAGAC 1917
Query 2247 AGAGAGCAAGATGATGGAAGAGCCACATGATGAGCTAAACAGCGAAATGAGCTTAA-GTA 2305
|||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||| | |
Sbjct 1918 AGAGAGCAAGATGACGGAAGAGCCACATGAAGAGCTAAGCAGCGAAATGATCTTAAAG-A 1976
Query 2306 CAGCGGTAGAGGAGAAGGAGACAGGGAGCAAGATGACGGAAGAGTCACATGAAGAGCTAA 2365
|||||||||||||||||||||||| ||||||||||| ||||| | |||| ||||||||||
Sbjct 1977 CAGCGGTAGAGGAGAAGGAGACAGAGAGCAAGATGATGGAAGTGCCACAGGAAGAGCTAA 2036
Query 2366 GC----AA-CGA----AATGA--GCT-TAGAAGAGAAGGAGACGGGGAGAAAGATGACGG 2413
| || ||| || || ||| |||| ||||||||||| | ||| ||||||||||
Sbjct 2037 GATGTGAAACGAGCTTAAAGACAGCTGTAGAGGAGAAGGAGACAGAGAGCAAGATGACGG 2096
Query 2414 AAGAG 2418
|||||
Sbjct 2097 AAGAG 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106081332325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5