BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29960.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491758 jgi|Araly1|491758|fgenesh2_kg.7__1191__AT4G29960.1 1677 0.0
> Ahg491758 jgi|Araly1|491758|fgenesh2_kg.7__1191__AT4G29960.1
Length=1151
Score = 1677 bits (908), Expect = 0.0
Identities = 1105/1192 (93%), Gaps = 45/1192 (4%)
Strand=Plus/Plus
Query 3 AAAATTTCACCTCCAAAGaaaaaaaTTATCAGACTTTCAGAAGAAGAAAAAACGAAGGAG 62
|||| ||||||||| |||||||||||||||||||| || ||||||||| ||||
Sbjct 1 AAAAATTCACCTCCTAAGAAAAAAATTATCAGACTCTC------AGAAAAAAC---GGAG 51
Query 63 AAGAAGAACAATTTCGCGGATTCAAGAGACAGAGAGCTTCTTCTGCGTAAAGTTTGATCC 122
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 52 AAGAAGAACAATTTCGCGGATTCAAGAGACAGAGAG-------AGCGTAAAGTTTGACCC 104
Query 123 TTTGAAAATGACGGAAGAACCAGAGAAGGTGTCTTCTTCAGTATTACATCAACCTTCTGG 182
|||||||||| | |||||||||||||||||| || | | |||||||
Sbjct 105 TTTGAAAATGGCTGAAGAACCAGAGAAGGTG------TC-----T---T----CTTCTGG 146
Query 183 TGATAAGAAACCTGAAGATGTTGGGATCAAACCTCAGGATCCAGCGTCTTCTTCTGGGTT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 TGATAAGAAACCTGAAGATGTTGGGATCAAACCTCAGGATCCAGCGTCTTCTTCTGGGTT 206
Query 243 TCGAGCTTATCCTAATGGTGATTCTCCAATGTACCCGGTTTTTTATCCGGGTCTTGTTCC 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 207 TCGAGCTTATCCTAATGGTGATTCTCCAATGTATCCGGTTTTTTATCCGGGTCTTGTTCC 266
Query 303 CGGATCCAATCCTGTACAGTACGAGGAACAAATGAACCGTGGAGCTGGGATCTATGCGGT 362
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 CGGATCGAATCCTGTACCGTACGAGGAACAAATGAACCGTGGAGCTGGGATCTATGCGGT 326
Query 363 TCCTGTTCATCAATTTGGAGGACATGTCGCTGGTCTTCCCTCAAATTATCTTATCCCTCT 422
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 327 TCCTGTGCATCAATTTGGTGGACATGTCGCTGGTCTTCCCTCAAATTATCTTATTCCTCT 386
Query 423 CACTTACAATGTTCCAACGACTAGACCAAATAATGAAGCTGAGACTGGGGGAGAGAATCA 482
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 387 CACTTACAATGTTCCAACTACTAGACCAAATAATGAGGCTGAGACTGGGGGAGAGAATCA 446
Query 483 AGCGCAAGCTGGGCAGGGTCAGCAGCAGCAGCTACCTGCAAATCAAAGGCATGTTGTGGA 542
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 447 AGCGCAAGCTGGGCAGGGTCAGCAGCAGCAGCAACCTGCAAATCAAAGGCATGTCGTGGA 506
Query 543 AAGGAGATTTCAGATCGCGTTTCAGCTTGATTTGTTTCTCATACTCAAGCTTGCTGCTGT 602
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 507 AAGGAGATTTCAGATCGCGTTTCAGCTTGATTTGTTCCTCATACTCAAGCTTGCTGCTGT 566
Query 603 TATCTTTTTGTTCAACCAAGATGGATCAAGACAAAGGCTTGCTGTTCTTGTGATTTTCGC 662
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 567 TATCTTTTTGTTCAACCAAGATGGATCAAGGCAAAGGCTCGCTGTGCTTGTGATTTTCGC 626
Query 663 TACCATAATTTACTTATACCAAACTGGAGCTCTTGCACCGTTTGTGCGATGGCTCTCACA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TACCATAATTTACTTATACCAAACTGGAGCTCTTGCACCGTTTGTGCGATGGCTCTCACA 686
Query 723 AGGTATGCATAGAGCAGCAGTACCACCTGCTCGACCACATAGACCTGCTGTTAGAGCTGA 782
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 687 AGGTATGCATAGAGCAGCAGTACCACCACCTCGACCACATAGACCTGCTGCGAGAGCTGA 746
Query 783 TAATGATCCCGCAGCTGCAGTTCCACTAAACGAAAATGCTGTTCTCGAGGGAGAAGAGAA 842
||||||| | ||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 747 TAATGATGCTGCAGCTGCAGTTCCACTAAACGAAAATGCAGTTCCCGAGGGACAAGAGAA 806
Query 843 TGAAGCTGATAACGGTAACCGAGCAAGAGCAAATGCAAATGAAAATGAAAACGTTGACGC 902
||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 807 TGAAGGTGATAATGGTAACCGAGCAA-A-----TGCAAATGAAAATGAAAACGTCGACGC 860
Query 903 AGGAAACCAAGGGAATCAATGGTGGGGGATAGTGAAAGAGATTCAGATGATAGTGTTCGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 AGGAAACCAAGGGAATCAATGGTGGGGGATAGTGAAAGAGATTCAGATGATAGTGTTCGG 920
Query 963 CTTCATAACTTCATTACTCCCTGGTTTTCACAACATAGAGTAGAAGTAGACTCTTTT-CT 1021
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 921 CTTTATAACTTCACTACTCCCTGGTTTTCACAACATAGAGTAGAAGTAGACTCTTTTTCT 980
Query 1022 GCATACTTTCATCTTCTGCAACTCaaaaaaaG---TGTTGTGTTCTACTTTTAGTCTCCT 1078
||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||
Sbjct 981 GCATACTTTCATCTTCTTCAACTCAAAAAAAGAAGTGTTGTGTTCTACTTT-AGTCTTCT 1039
Query 1079 TCGATCTAATGTGTAAGTACAGAAAATTTTACCCTTCAGACTCCAAAACTTAATGTATGT 1138
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TCGATCTAAAGTGCAAGTACAGAAAATTTTACCCTTCAGACTCCAAAACTTAATGTATGT 1099
Query 1139 GAGCCGCAATTTTTATGCTTTTGCCTCTAATGTTCAAAGCAGAGGATCTCAG 1190
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1100 GAGCAGCAATCTTTATGCTTTTGCCTCTAATGTTCAAAGCAGAGGAACTCAG 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5