BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29970.1

Length=852
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945003 jgi|Araly1|945003|scaffold_701232.1                        259    2e-68
  Ahg928019 jgi|Araly1|928019|scaffold_300476.1                        124    8e-28
  Ahg928020 jgi|Araly1|928020|scaffold_300477.1                       63.9    2e-09


> Ahg945003 jgi|Araly1|945003|scaffold_701232.1
Length=648

 Score =  259 bits (140),  Expect = 2e-68
 Identities = 176/192 (92%), Gaps = 7/192 (4%)
 Strand=Plus/Plus

Query  462  ATCTCTGATAAGCTTCAATCTGAGATCTGAAGAATTCAATGTTATTAAGTTCCCTAAGGA  521
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  173  ATCTCTAATAAGCTTCAATCTGAGATCTGAAGACTTCAATGTTATTAAGTTCCCTAAGGA  232

Query  522  TGTCAAACATATATGGTCTAGTAATCTGGTGAACTACAATGGAAAGATAGCTTTAACGAG  581
            ||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| 
Sbjct  233  TGTCAAATATCTATGGTCTTGTTATCTGGTGAACTACAATGGAAAGATAGCTTTAACGAA  292

Query  582  TTACTCTTGTAACG--G-TACACTTGACTTGTGGGTTATGAAGGATGATGCTAGTAAACA  638
            | ||||||||||||  | |||||||||||||||||||||||||||||   | ||||||||
Sbjct  293  TGACTCTTGTAACGACGGTACACTTGACTTGTGGGTTATGAAGGATGC--C-AGTAAACA  349

Query  639  AGAATGGTTCAA  650
            |||||||| |||
Sbjct  350  AGAATGGT-CAA  360


 Score =  195 bits (105),  Expect = 6e-49
 Identities = 183/218 (84%), Gaps = 15/218 (7%)
 Strand=Plus/Plus

Query  644  GGTTCAAGGATACACTTAGTACCGGGGAGCTTATATTTGCACCGTGCTTTATTACC-GAT  702
            ||||||||| |||| ||||||||||||||||||||||||||||||||  | || ||  | 
Sbjct  415  GGTTCAAGGGTACATTTAGTACCGGGGAGCTTATATTTGCACCGTGCACT-TTCCCTAAC  473

Query  703  CCGTTCTTTTTTATTTGTTACGATCTCAA-GGAAAAAAGTGCCAGAAAAGTTGTGATTGA  761
            |||| |  ||| |  | |||||||||||| |||||||| |||||||||| ||||||||||
Sbjct  474  CCGTAC--TTTGA-ATATTACGATCTCAAGGGAAAAAA-TGCCAGAAAACTTGTGATTGA  529

Query  762  AGGACTTGGGGATGAC-T--AT-G-TT-AATGTCTCTT-TGGATCATGTAGAGAGTCCTA  814
            |||| |||| |||||| |   | | || || |||| || |||||||||||||||||||||
Sbjct  530  AGGAATTGGAGATGACTTGGTTAGTTTCAAAGTCT-TTATGGATCATGTAGAGAGTCCTA  588

Query  815  TGTTTCTACCAAAGGTTTGTTTATCCGATGATGACTAG  852
            |||||||||||||||| |||||||| ||| |||| |||
Sbjct  589  TGTTTCTACCAAAGGTGTGTTTATCGGATAATGATTAG  626


> Ahg928019 jgi|Araly1|928019|scaffold_300476.1
Length=1221

 Score =  124 bits (67),  Expect = 8e-28
 Identities = 148/185 (80%), Gaps = 14/185 (8%)
 Strand=Plus/Plus

Query  647   TCAAGGATACACTTAGTACCGGGGAGCTTATATTTGCACCGTGCTT-T--A-TTACCGAT  702
             ||| || |||||||||||||||||||||||||||| |||||  ||  |  | |||  || 
Sbjct  1004  TCAGGGGTACACTTAGTACCGGGGAGCTTATATTTACACCGA-CTCGTCCAGTTA--GA-  1059

Query  703   CCGTTCTTTTTTATTTGTTACGATCTCAAGGAAAAAAGTGCCAGAAAAGTTGTGATTGAA  762
             ||||||| ||||||  ||| ||||||||||||||| ||||||| |||||||||| |||||
Sbjct  1060  CCGTTCTATTTTATCAGTTTCGATCTCAAGGAAAACAGTGCCAAAAAAGTTGTGGTTGAA  1119

Query  763   GGACTTGGGGATGACTATGTTAATGTC----TCT-TTG-GATCATGTAGAGAGTCCTATG  816
             | | |||| ||| ||| || || | ||    ||| ||  |||||||| ||||||||||||
Sbjct  1120  GAAATTGGAGATAACTTTGCTAGTCTCGAAATCTATTTCGATCATGTGGAGAGTCCTATG  1179

Query  817   TTTCT  821
              ||||
Sbjct  1180  GTTCT  1184


 Score = 86.1 bits (46),  Expect = 4e-16
 Identities = 52/55 (95%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  385  GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAGAATGGAGAATGATTGAAT  439
            |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct  628  GAGGAGCATCAAGTTTTCACTCTAGGAGCTAAACAAAAATGGAGAAGGATCGAAT  682


> Ahg928020 jgi|Araly1|928020|scaffold_300477.1
Length=1202

 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 83/105 (79%), Gaps = 9/105 (9%)
 Strand=Plus/Plus

Query  550  GTGAACTACAATGGAAAGATAGCTTTAACGAGT---TACTCTTG-TAACGGTACACTTGA  605
            ||||||||||||||||||||||||||||||||    ||||||   | | ||| ||||| |
Sbjct  828  GTGAACTACAATGGAAAGATAGCTTTAACGAGACAGTACTCTAAATTA-GGTCCACTTTA  886

Query  606  CTTGTGGGTTATGAAGGATGATGCTAGTAAACAAGAATGGTTCAA  650
            | ||||| || || |  | |||||  | ||||||||||||| |||
Sbjct  887  CCTGTGGATTCTGGA--A-GATGCCCGCAAACAAGAATGGT-CAA  927



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31527652359


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5