BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29980.1
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491757 jgi|Araly1|491757|fgenesh2_kg.7__1190__AT4G29980.1 841 0.0
> Ahg491757 jgi|Araly1|491757|fgenesh2_kg.7__1190__AT4G29980.1
Length=526
Score = 841 bits (455), Expect = 0.0
Identities = 503/526 (96%), Gaps = 3/526 (1%)
Strand=Plus/Plus
Query 32 TCTTCCATGGCAACCACCAAGCA---CCTCCTCCTCTTCCTCCTCATCATCGCTATCATC 88
|||||||||||||||||||| || |||||||||||||||||||||| || |||| |||
Sbjct 1 TCTTCCATGGCAACCACCAAACACCTCCTCCTCCTCTTCCTCCTCATCCTCACTATGATC 60
Query 89 ACCATTACATCTTCCACTTCACTTCCATTTCTCACGACGGAGCAAAACCAAATCGCAACC 148
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCATTACATCCTCCACTTCGCTTCCATTTCTCACGACGGAGCAAAACCAAATCGCAACC 120
Query 149 AAAATCATAGACGCAATGGTCTCAAGTGGCTCTTTCGAAGATTGGAGCGGAGCGTTCCTC 208
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAAATCATAGACGCAATGATCTCAAGCGGCTCTTTCGAAGATTGGAGCGGAGCGTTCCTC 180
Query 209 AACAACAACGACGAATTAAACGGTCCAGTCCTAACTTCAACTCTCTTCCTCCCCAAAACA 268
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AACAACAACGACGAATTAAACGGTCCAGTCCTCACTTCAACTCTCTTCCTCCCCAAAACA 240
Query 269 TCCGTGGAAGGAATCAACGCCACGTCACCACTAGTTGCTTCTTACCATATTGTTCCACAA 328
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 241 TCCGTAGAAGGAATCAACGCCACGTCACCACTCGTTGCTTCTTACCACATTGTTCCACAA 300
Query 329 TGGCTTGACTTCTCCGTCATAAGTCTCATGATGCCTTTCTCTCGCATCCCTACACTCCTC 388
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 301 TGGCTTGACTTCTCCGTCATAAGTCTCATGATGCCTTTCTCTCGCATTCCTACACTTCTC 360
Query 389 TCTGGACACTCTATAGTCGTTACCAACAATTCAGCTTCTGGTTTTACTCTTGATGGTGTT 448
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 361 TCTGGACACTCTATAGTCGTTACCAATAATTCAGCTTCTGGTTTTACTCTTGATGGCGTT 420
Query 449 CTCATCTCTGAGCCAGATTTATTCGTCTCTCCTACTATAGTTATCCATCGAATGGCTTTT 508
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 421 CTCATCTCTGAGCCAGATTTATTCGTCTCTCCTTCCATAGTTATCCATCGAATGGCTTTT 480
Query 509 CCATTTAACTTCTCTCGTTACGGTGGTGGCGATATATAGTTATTTA 554
|||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 481 CCATTTAACTTCTCTCGTTACGGTGGTGGCCATATATAGTTAGTTA 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23064364785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5