BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29990.1

Length=3334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889125 jgi|Araly1|889125|Al_scaffold_0007_1111                    497    2e-139


> Ahg889125 jgi|Araly1|889125|Al_scaffold_0007_1111
Length=333

 Score =  497 bits (269),  Expect = 2e-139
 Identities = 309/329 (94%), Gaps = 0/329 (0%)
 Strand=Plus/Plus

Query  2811  ACTTAGACCCTGAGTATTACGCAACGCGGCAAATGAACGAGAAGAGTGATGTTTACAGCT  2870
             |||||||||| |||||||||   |||||||||||||| ||||||||||||||||||||||
Sbjct  2     ACTTAGACCCCGAGTATTACATGACGCGGCAAATGAATGAGAAGAGTGATGTTTACAGCT  61

Query  2871  TCGGGGTGGTTCTTCTTGAAGTAATAACAGGAAAACCGGCAATTTGGCATTCAAGAACAG  2930
             |||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||
Sbjct  62    TCGGGGTGGTTCTTCTTGAAGTCATAACAGGAAAACCGGCGATTTCGCGTTCAAGAACAG  121

Query  2931  AGAGTGTGCATCTAAGTGATCAGGTTGGTTCAATGTTGGCGAATGGAGACATAAAAGGTA  2990
             |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  122   AGAGTGTGCATCTATGTGATCAGGTTGGTTCAATGTTGGCGAATGGAGACATAAAATGCA  181

Query  2991  TTGTGGATCAACGTCTGGGAGATAGATTTGAGGTTGGCTCGGCTTGGAAGATCACTGAAC  3050
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  182   TTGTGGATCAACGTCTAGGAGATAGATTTGAGGTTGGCTCGGCTTGGAAGATCACTGAAA  241

Query  3051  TAGCATTGGCTTGTGCGTCTGAGAGTTCAGAACAAAGACCGACAATGAGCCAAGTCGTTA  3110
             |||||||||||| |||||||||| ||||||| ||||||| ||| ||||||||||||||||
Sbjct  242   TAGCATTGGCTTCTGCGTCTGAGCGTTCAGAGCAAAGACTGACGATGAGCCAAGTCGTTA  301

Query  3111  TGGAGCTGAAACAGAGTATCTTTGGGAGA  3139
             ||||||||||||||||| |||||||||||
Sbjct  302   TGGAGCTGAAACAGAGTGTCTTTGGGAGA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 125856393911


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5