BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30000.2
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945001 jgi|Araly1|945001|scaffold_701230.1 2532 0.0
Ahg476043 jgi|Araly1|476043|fgenesh2_kg.2__1173__AT1G69190.1 1279 0.0
> Ahg945001 jgi|Araly1|945001|scaffold_701230.1
Length=1683
Score = 2532 bits (1371), Expect = 0.0
Identities = 1559/1646 (95%), Gaps = 28/1646 (2%)
Strand=Plus/Plus
Query 46 CTCTACTTTCTATTTCCCAAGATGGCTCCTTTGCTGTCACAA-ACCTTAATACACACCGG 104
||||||||||| ||||| |||||||||| ||||||||||||| | ||||| ||||||||
Sbjct 2 CTCTACTTTCTCTTTCCAAAGATGGCTCGTTTGCTGTCACAATA-TTTAATCCACACCGG 60
Query 105 CAGATTCCTTCTCCGTCGCTTCTTAGAACCACCTCCGGCAGTAATCTCTGCTGTGGCTGC 164
|||||||||||||| ||||||| ||||||||||||||| |||| | | ||
Sbjct 61 AAGATTCCTTCTCCGCCGCTTCTCAGAACCACCTCCGGCGGTAA---------T--C-GC 108
Query 165 GAGTCGCGTCTGCTTCCATCGATACTATTCGTCGAAGTCTCTTTCTCTCG-TGTCTCCAC 223
|| |||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 109 GA------------TCCACCGATACTATTCGTCGAAGTCTCTTTCTCT-GATGTCTCCAC 155
Query 224 TTGGCTTGCACTGTTCCTCTTTATTCAGTCCTCCAGCATTATGTAACTCAGCTTTCTCAT 283
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 156 TTGGCTTGCACTGTTCCTCTTTATCCAGTCCTCCAGCATTATGTAACTCAGCTTTCTCAT 215
Query 284 CTTCGGCAACAAGTACAACTATCGAAGTACAATCTACAGAGCATGAAGTTGTGATTGCTT 343
|||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||
Sbjct 216 CTTCGGCAACAAGTACAACTGTTGAAGTTCAATCTACGGAGCATGAAGTTGTGATTGCTT 275
Query 344 TAGGAAGTAACATTGGAAACCGGATGAATAATTTCAGAGAGGCTTTGCGATTGATGAAGC 403
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 276 TAGGAAGTAACATTGGAAACCGGATGAATAATTTCAGAGAAGCTTTGCGATTGATGAAGC 335
Query 404 GTGGTGGCATTTGTGTAACCAGGCACAGTTGTTTGTACGAAACGGCTCCGGTTCATGTGA 463
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 336 GTGGTGGCATTTGTGTAACCAGGCACAGTTGTTTATACGAAACGGCTCCTGTTCATGTGA 395
Query 464 CTGACCAACCCAGGTTTCTCAATGCTGCAGTGAGAGGTGTCACTAAGCTTGGACCTCATG 523
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 396 CTGACCAACCCAGGTTTCTCAATGCTGCAGTGAGAGGTGTTACTAAGCTTGGACCTCATG 455
Query 524 AGCTATTAAGTGTTCTCAAGACTATTGAGAGAGACATGGGACGTAAGGATGGTATTAGGT 583
| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 456 AACTATTGAGTGTTCTCAAGACTATTGAGAAAGACATGGGACGTGAGGATGGTATTCGGT 515
Query 584 ATGGACCAAGACCGCTTGACTTGGACATATTGTTCTATGGGAAGATGAGAATTAGTTCTG 643
||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||
Sbjct 516 ATGGACCAAGACCACTTGATTTGGACATATTGTTCTACGGCAAGATGAGAATAAGTTCTG 575
Query 644 ATAAGCTGATCATACCACATGAGAGACTCTGGGAAAGGTCATTTGTGTTAGCACCTTTGG 703
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 576 ATAAGCTGATCATACCACATGAGAGACTCTGGGAGAGGTCATTTGTGTTAGCACCTTTGG 635
Query 704 TTGATTTGCTTGGATCAGCTGTTGATAATGATACAGTTGCTCATTGGCATTCGCTCGCGA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TTGATTTGCTTGGATCAGCTGTTGATAATGATACAGTTGCTCATTGGCATTCGCTCGCGA 695
Query 764 TACATCCTGGTGGAATTTTCCAAGCGTGGGAGAGACTGGGTGGCGAGTCACTGATTGGAC 823
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 696 TACATCCTGGTGGAATTTTCCAAGCGTGGGAGAGACTGGGTGGCGAATCACTGATTGGAC 755
Query 824 AAGATGGTATACAAAGGGTTTTACCAATAGGAGATAAGCTGTGGGATTTTTCTAACAAAA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AAGATGGTATACAAAGGGTTTTACCAATAGGAGATAAGCTGTGGGATTTTTCTAACAAAA 815
Query 884 CTCATGTGATGGGTATACTTAATCTTACACCTGACAGCTTTAGTGATGGAGGGAAATTTC 943
||||||| |||||||||||||||||||| || ||||||||||| ||||||||| ||||||
Sbjct 816 CTCATGTAATGGGTATACTTAATCTTACTCCCGACAGCTTTAGCGATGGAGGGCAATTTC 875
Query 944 AATCAATAGATTCTGCAGTTTCTCGGGTTCGCTCAATGATCTCTGAGGGTGCAGATATAA 1003
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 876 AATCAATAGATTCTGCAGTTTCTCGGGTTCGCTCAATGATCTCTGATGGTGCAGATATAA 935
Query 1004 TTGATATTGGAGCACAGTCCACACGCCCAATGGCCTCAAGAATTTCTAGTCAAGAAGAGT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TTGATATTGGAGCACAGTCCACACGCCCAATGGCCTCAAGAATTTCTAGTCAAGAAGAGT 995
Query 1064 TAGATAGACTACTACCAGTTTTAGAGGCTGTTCGTGGTATGCCAGAGATGGAGGAAAAGC 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TAGATAGACTACTACCAGTTTTAGAGGCTGTTCGTGGTATGCCAGAGATGGAGGAAAAGC 1055
Query 1124 TCATATCTGTGGACACTTTCAACTCTGAGGTTGCTTCAGAAGCAATAAGCAATGGAGCTG 1183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TCATATCCGTGGACACTTTCAACTCTGAGGTTGCTTCAGAAGCAATAAGCAATGGAGCTG 1115
Query 1184 ACATTCTAAATGATGTATCTGCGGGAACCTTAGACCCGAATATGCATAAGGTTGTTGCAG 1243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1116 ACATTCTAAATGATGTATCTGCGGGAACCTTAGACCCGAATATGCATGAGGTTGTTGCAG 1175
Query 1244 AATCTGGGGTTCCTTATATGGCCATGCACATGAGAGGAGATCCATGTACAATGCAGAACA 1303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 AATCTGGGGTTCCTTACATGGCCATGCACATGAGAGGAGATCCATGTACAATGCAGAACA 1235
Query 1304 AAGAGAATTTGCAGTATGATGATGTCTGCAAGGATGTTGCTTCTGAACTCTACTTGAGAG 1363
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1236 AAGAGAATTTGCAGTACGATGATATCTGCAAGGATGTTGCTTCTGAACTCTACTTGAGAG 1295
Query 1364 TAAGAGATGCAGAACTCTCTGGGATTCCAGCTTGGAGGGTTATGATCGATCCAGGGATTG 1423
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGAGAGATGCGGAACTCTCTGGGATTCCAGCTTGGAGGGTTATGATCGATCCAGGGATTG 1355
Query 1424 GGTTTTCCAAGAGCGTAGATCATAATCTAGATATTATTATGGATCTTCCAAAAATCCGAG 1483
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1356 GGTTTTCCAAGAATGTAGATCATAATCTAGATATTATTATGGATCTGCCAAAAATCCGAG 1415
Query 1484 AAGAGATGGCTAAGAGAAGTATAGCAGTTTCTCATGCGCCTATACTCGTAGGACCTTCAA 1543
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1416 AAGAGATGGCTAAGAGAAGTATAGCAGTGTCTCATGCGCCTATACTCATAGGACCTTCAA 1475
Query 1544 GGAAAAGATTTCTGGGAGATATTTGTGGGCGACCTGAGGCCACTGACAGAGATGCTGCAA 1603
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1476 GGAAGAGGTTTCTGGGAGATATTTGTGGGCGTCCTGAGGCCACTGACAGAGATGCTGCAA 1535
Query 1604 CTGTTGCTTCTGTCACTGCAGGCATTCTAGGAGGTGCCAATATCATCAGAGTTCATAATG 1663
|||||||||| || |||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 1536 CTGTTGCTTCAGTTACTGCAGGCATTTTAGGAGGTGCCAATATCATTAGAGTTCATGATG 1595
Query 1664 TTAGACATAACGCCGACGCAGCAAAA 1689
||||||||||||| |||||||| |||
Sbjct 1596 TTAGACATAACGCAGACGCAGCTAAA 1621
> Ahg476043 jgi|Araly1|476043|fgenesh2_kg.2__1173__AT1G69190.1
Length=1521
Score = 1279 bits (692), Expect = 0.0
Identities = 1159/1383 (84%), Gaps = 37/1383 (3%)
Strand=Plus/Plus
Query 328 GAAGTTGTGATTGCTTTAGGAAGTAACATTGGAAACCGGATGAATAATTTCAGAGAGGCT 387
||||| ||||||||||||||||| || |||||||| | ||||||||||| ||||| |||
Sbjct 37 GAAGTAGTGATTGCTTTAGGAAGCAATGTTGGAAACAGAATGAATAATTTTAGAGAAGCT 96
Query 388 TTGCGATTGATG-AAG-CGTGGTGGCATTTGTGTAACCAGGCACAGTTGTTTGTACGAAA 445
|| ||||||||| ||| | | ||| || ||||||| || || ||||||||||||||||
Sbjct 97 TTACGATTGATGAAAGAC-T-ATGGGATCTGTGTAATAAGACATAGTTGTTTGTACGAAA 154
Query 446 CGGCTCCGGTTCATGTGACTGACCAACCCAGGTTTCTCAATGCTGCAGTGAGAGGTGTCA 505
| | || ||||||||||| ||||||| || ||||||||||||||| | |||||| ||
Sbjct 155 CAGAACCTGTTCATGTGACCAACCAACCAAGATTTCTCAATGCTGCAATAAGAGGTACCA 214
Query 506 CTAAGCTTGGACCTCATGAGCTATT-AAGTGTTCTCAAGACTATTGAGAGAGACATGGGA 564
| |||| | ||||||||| || || || ||||||||| ||||||| ||| |||||
Sbjct 215 CAAAGCACGAACCTCATGAACTCTTGAA-CATTCTCAAGAAAATTGAGAAAGAGATGGGT 273
Query 565 CGT-AAG-G-ATGGTATT-AGGTATGGACCAAGACCGCTTGACTTGGACATATTGTTCTA 620
||| ||| | ||||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 274 CGTAAAGAGAATGGT-TTAAGGTATGGACCAAGACCACTTGATTTGGACATATTGTTCTA 332
Query 621 TGGGAAG-ATGAGAATTAGTTCTGATAAGCTGATCATACCACATGAGAGACTCTGGGAAA 679
||||||| || ||||| | ||||||||| || ||||| || ||||||||| |||||||||
Sbjct 333 TGGGAAGCAT-AGAATAACTTCTGATAAACTCATCATTCCCCATGAGAGAATCTGGGAAA 391
Query 680 GGTCATTTGTGTTAGCACCTTTGGTTGATTTGCTTGGATC---AGCTGTTGATAATG--- 733
| ||||||| |||||||||||||| |||||||||||| | || | |||||||||
Sbjct 392 GACCATTTGTATTAGCACCTTTGGTAGATTTGCTTGGAACAGAAGATATTGATAATGATC 451
Query 734 ATACAGTTGC-TCATTGGCATTCGCTCGCGATACATCCTGGTGGAATTTTCCAAGCGTGG 792
||| |||| | | |||||||||| ||| | || ||||| |||||| |||| |||||||||
Sbjct 452 ATATAGTTTCAT-ATTGGCATTCACTCTCAATCCATCCAGGTGGAGTTTTTCAAGCGTGG 510
Query 793 GAGAGACTGGGTGGCGAGTCACTGATTGGACAAGATGGTATACAAAGGGTTTTACCAATA 852
||| | | ||||| || ||| || ||| | ||| ||||||||||||||| ||||||||
Sbjct 511 GAGCGGTTAGGTGGTGAATCATTGCTTGCAAAAGGCGGTATACAAAGGGTTGTACCAATA 570
Query 853 GGAGATAAGCTGTGGGATTTTTCTAACAAAACTCATGTGATGGGTATACTTAATCTTACA 912
|||||| | | |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 571 GGAGATGATTTATGGGATTTTTCTAAGAAAACTTATGTGATGGGTATACTTAATCTTACT 630
Query 913 CCTGACAGCTTTAGTGATGGAGGGAAATTTCAATCAATAGATTCTGCAGTTTCTCGGGTT 972
||||| ||||||||||||||||| || |||||||| |||||||| || ||||||| ||
Sbjct 631 CCTGATAGCTTTAGTGATGGAGGTAAGTTTCAATCTATAGATTCAGCGGTTTCTCAAGTC 690
Query 973 CGCTCAATGATCTCTGAGGGTG-CAGATATAATTGATATTGGAGCACAGTCCACACGCCC 1031
|||| ||||||||||| |||| | ||||| |||||||| || |||||||| || || ||
Sbjct 691 CGCTTGATGATCTCTGAAGGTGTC-GATATTATTGATATCGGTGCACAGTCAACGCGGCC 749
Query 1032 AATGGCCTCAAGAATTTCTAGTCAAGAAGAGTTAGATAGACTACTACCAGTTTTAGAGGC 1091
|||||||||||||||||||| |||||||||| ||||||||||| | || |||||| | |
Sbjct 750 AATGGCCTCAAGAATTTCTACTCAAGAAGAGATAGATAGACTAATTCCGGTTTTAAAAGT 809
Query 1092 TGTTCGTGGTATGCCAGAGATG-GAGGAAAAGCTCATATCTGTGGACACTTTCAACTCTG 1150
|||||| |||||| | |||||| ||| |||||||||||| ||||||||||| |||||||
Sbjct 810 TGTTCGAGGTATGGCTGAGATGAAAGG-AAAGCTCATATCAGTGGACACTTTTAACTCTG 868
Query 1151 AGGTTGCTTCAGAAGCAATAAGCAATGGAGCTGACATTCTAAATGATGTATCTGCG-GGA 1209
||||||||| |||||||||||| ||||||||||||||| | |||||||| |||| | |||
Sbjct 869 AGGTTGCTTTAGAAGCAATAAGAAATGGAGCTGACATTTTGAATGATGTCTCTG-GAGGA 927
Query 1210 ACCTTAGACCCGAATATGCATAAGGTTGTTGCAGAATCTGGGGTTCCTTATATGGCCATG 1269
| ||||||||||| ||||||| |||| |||| || |||| |||||||||||| ||||
Sbjct 928 AGTTTAGACCCGAACATGCATATGGTTATTGCGGATTCTGATGTTCCTTATATGATCATG 987
Query 1270 CACATGAGAGGAGATCCATGTACAATGCAGAACAAAGAGAATTTGCAGTATGATGATGTC 1329
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
Sbjct 988 CACATGAGAGGAGATCCATGTACAATGCAAAACAAAGAGAATTTGGAGTATAATGATATA 1047
Query 1330 TGCAAGGATGTTGCTTCTGAACTCTACTT-GAGAGTAAGAGATGCAGAACTCTCTGGGAT 1388
||||| ||||||||||| || || || | |||||||||||| |||||||||||||||||
Sbjct 1048 TGCAAAGATGTTGCTTCGGAGCTTTA-TGAGAGAGTAAGAGAGGCAGAACTCTCTGGGAT 1106
Query 1389 TCCAGCTTGGAGGGTTATGATCGATCCAGGGATTGGGTTTTCCAAGAGCGTAGATCATAA 1448
||||||||||||| ||||||| |||||||| ||||| ||||| ||| | ||| ||||||
Sbjct 1107 TCCAGCTTGGAGGATTATGATTGATCCAGGAATTGGATTTTCTAAGGGAATAGCTCATAA 1166
Query 1449 TCTAGATATTATTATGGATCTTCCAAAAATCCGAGAAGAGATGGCTAAGA-GAAGTATAG 1507
| |||| ||| | ||||| || ||||||||| | |||||||||| ||||| || ||||||
Sbjct 1167 TTTAGAAATTGTCATGGAGCTACCAAAAATCAGGGAAGAGATGGGTAAGAAGA-GTATAG 1225
Query 1508 CAGTTT--CTCATGCGCCTATACTCGTAGGACCTTCAAGGAAAAGATTTCTGGGAGATAT 1565
|||| ||||||| |||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 1226 --GTTTGTCTCATGCACCTATACTTATAGGACCCTCAAGGAAAAGATTTTTGGGAGATAT 1283
Query 1566 TTGTGGGCGACCTGAGGCCACTGACAGAGATGCTGCAACTGTTGCTTCTGTCACTGCAGG 1625
|||||| || |||||||| | ||| |||||| ||||||||||||||| ||| ||||||||
Sbjct 1284 TTGTGGTCGTCCTGAGGCAAGTGAAAGAGATCCTGCAACTGTTGCTTGTGTTACTGCAGG 1343
Query 1626 CAT-TCTAGGAGGTGCCAATATCATCAGAGTTCATAATGTTAGACATAACGCCGACGCAG 1684
|| | || |||||| | |||||| |||||||||||||||||| |||| | ||||| |
Sbjct 1344 GATAT-TAAAAGGTGCTACTATCATTAGAGTTCATAATGTTAGAGATAATGTAGACGCGG 1402
Query 1685 CAA 1687
|||
Sbjct 1403 CAA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5